Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012972

Physical Location & Seq

Genomic Coordinates Forward (+)

3790218 .. 3790856

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G077800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGGAGGAGGAAAATTGAGATGAAAATGGTGAAAGATAGCAGCTCTAGGCAGGTGACCTTCTCCAAGAGAAGGACTGGTCTGTTTAAGAAAGCAAATGAGCTTGCTACTCTGTGTGGAGCTGAGATTGGTGTCATTGTTTTCTCCCCTGGAGGCAAGCCCTTCTCATTTGGGCACCCAAATGTGGAGTCAATTGCTGACAGGTTTCTAAATCAGGAGGGCTCAAAATCAAAAGCTGGTTCTTCAAATTCAAAGAATGATGAAACAGTGGAGAGGCTTAGCCAACAACTTGATGACCTGAACAAGAAGTTGGAGGCTGAGAAGAAAAGGGGACATATGCTTGACAAGGCAATACTGAAAGCAAAGGGTTTGCCCCTCAAGAGCAAGGCACCAAATGTTCATGAGCTGAGCCAGGCAGATCTTCAAAAAATGAAAGAATCTCTGGAACAGCTGCGCGAGAAGGTGAAAGCCAGGGCCTGTGAGATGGAGGCATCATCTTCATTGCTGCTCCTGGCAAACGAGCCTGATATAGAGACTGATAGGACTGTTGCTAAAAATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

188

Amino Acids

20.76

Weight (kDa)

9.47

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34440 AT3G66656
fragaria_vesca	FvH4_3g05940 FvH4_3g36320
malus_domestica	MD05G1287100.v1.1 MD10G1264500.v1.1
prunus_persica	Prupe.4G077800_v2.0.a1
pyrus_communis	pycom05g26560
rosa_chinensis	RchiOBHm_Chr5g0013531
rosa_laevigata	RLG00000032023
rosa_multiflora	Rmu_sc0014653.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063040
rosa_rugosa	Rorug05G0010300
rosa_samantha	Rh5AG105300 Rh5BG101400 Rh5CG113400 Rh5DG100100
rosa_wichuraiana	Rw5G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	2 cut(s)	174, 388
AccII	CGCG	1 cut(s)	456
AcsI	RAATTY	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	72, 184
AgsI	TTSAA	3 cut(s)	246, 252, 425
AjnI	CCWGG	4 cut(s)	148, 411, 470, 510
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	6 cut(s)	45, 103, 122, 236, 406, 451
AluI	AGCT	6 cut(s)	45, 103, 122, 236, 406, 451
Alw26I	GTCTC	1 cut(s)	527
AlwNI	CAGNNNCTG	1 cut(s)	477
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	3 cut(s)	42, 451, 505
ApoI	RAATTY	1 cut(s)	247
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	474
AsuHPI	GGTGA	3 cut(s)	43, 67, 475
BaeGI	GKGCMC	1 cut(s)	177
BanI	GGYRCC	2 cut(s)	174, 388
BanII	GRGCYC	1 cut(s)	224
BbvI	GCAGC	3 cut(s)	54, 438, 492
BccI	CCATC	1 cut(s)	478
BciT130I	CCWGG	4 cut(s)	150, 413, 472, 512
BcoDI	GTCTC	1 cut(s)	527
BfaI	CTAG	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	3 cut(s)	43, 452, 506
BlpI	GCTNAGC	2 cut(s)	278, 407
BlsI	GCNGC	3 cut(s)	44, 453, 507
Bme1390I	CCNGG	4 cut(s)	150, 413, 472, 512
BmgT120I	GGNCC	1 cut(s)	474
BmiI	GGNNCC	2 cut(s)	176, 390
BmrFI	CCNGG	4 cut(s)	150, 413, 472, 512
BmsI	GCATC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	171
Bpu1102I	GCTNAGC	2 cut(s)	278, 407
BpuEI	CTTGAG	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	148, 471
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 184
Bse1I	ACTGG	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	500
BseBI	CCWGG	4 cut(s)	150, 413, 472, 512
BseDI	CCNNGG	2 cut(s)	148, 471
BseLI	CCNNNNNNNGG	2 cut(s)	72, 184
BseMI	GCAATG	1 cut(s)	500
BseMII	CTCAG	3 cut(s)	114, 309, 398
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	3 cut(s)	54, 438, 492
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	1 cut(s)	476
BshNI	GGYRCC	2 cut(s)	174, 388
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	2 cut(s)	72, 184
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	1 cut(s)	476
Bsp1286I	GDGCHC	2 cut(s)	177, 224
Bsp143I	GATC	1 cut(s)	418
Bsp1720I	GCTNAGC	2 cut(s)	278, 407
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	3 cut(s)	115, 310, 399
BspFNI	CGCG	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	176, 390
BspMI	ACCTGC	1 cut(s)	43
BspT107I	GGYRCC	2 cut(s)	174, 388
BsrDI	GCAATG	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	148, 471
BssMI	GATC	1 cut(s)	418
Bst2UI	CCWGG	4 cut(s)	150, 413, 472, 512
Bst4CI	ACNGT	2 cut(s)	268, 547
BstC8I	GCNNGC	2 cut(s)	105, 158
BstDEI	CTNAG	4 cut(s)	123, 278, 318, 407
BstEII	GGTNACC	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	1 cut(s)	421
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	1 cut(s)	418
BstNI	CCWGG	4 cut(s)	150, 413, 472, 512
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	4 cut(s)	148, 411, 470, 510
BstSLI	GKGCMC	1 cut(s)	177
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	3 cut(s)	54, 438, 492
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	476
BtsIMutI	CAGTG	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	105, 158
CaiI	CAGNNNCTG	1 cut(s)	477
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	1 cut(s)	456
Cfr13I	GGNCC	1 cut(s)	474
CviAII	CATG	1 cut(s)	401
DdeI	CTNAG	4 cut(s)	123, 278, 318, 407
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	224
Eco91I	GGTNACC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	474
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	4 cut(s)	148, 411, 470, 510
EcoT38I	GRGCYC	1 cut(s)	224
FaeI	CATG	1 cut(s)	404
FaiI	YATR	4 cut(s)	336, 338, 402, 530
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	1 cut(s)	400
FauNDI	CATATG	1 cut(s)	336
Fnu4HI	GCNGC	3 cut(s)	43, 452, 506
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	3 cut(s)	43, 452, 506
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	3 cut(s)	43, 452, 506
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	476
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	1 cut(s)	404
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HinfI	GANTC	2 cut(s)	188, 437
HphI	GGTGA	3 cut(s)	43, 67, 475
Hpy188III	TCNNGA	4 cut(s)	215, 379, 401, 443
HpyAV	CCTTC	4 cut(s)	66, 70, 172, 454
HpyCH4III	ACNGT	2 cut(s)	268, 547
HpyF3I	CTNAG	4 cut(s)	123, 278, 318, 407
Hsp92II	CATG	1 cut(s)	404
HspAI	GCGC	1 cut(s)	454
Kzo9I	GATC	1 cut(s)	418
LmnI	GCTCC	2 cut(s)	119, 513
Lsp1109I	GCAGC	3 cut(s)	54, 438, 492
LweI	GCATC	1 cut(s)	500
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	420
MboI	GATC	1 cut(s)	418
MboII	GAAGA	4 cut(s)	234, 334, 413, 489
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	2 cut(s)	177, 224
MluCI	AATT	3 cut(s)	15, 192, 247
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	7 cut(s)	3, 146, 211, 267, 307, 386, 481
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	451
MspR9I	CCNGG	4 cut(s)	150, 413, 472, 512
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	4 cut(s)	150, 413, 472, 512
MvnI	CGCG	1 cut(s)	456
NdeI	CATATG	1 cut(s)	336
NdeII	GATC	1 cut(s)	418
NlaIII	CATG	1 cut(s)	404
NlaIV	GGNNCC	2 cut(s)	176, 390
NmuCI	GTSAC	1 cut(s)	55
PagI	TCATGA	1 cut(s)	400
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	437
PkrI	GCNGC	3 cut(s)	44, 453, 507
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp6I	CCWGG	4 cut(s)	148, 411, 470, 510
PspEI	GGTNACC	1 cut(s)	55
PspGI	CCWGG	4 cut(s)	148, 411, 470, 510
PspN4I	GGNNCC	2 cut(s)	176, 390
PspPI	GGNCC	1 cut(s)	474
PstNI	CAGNNNCTG	1 cut(s)	477
PsuI	RGATCY	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	451
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	3 cut(s)	43, 452, 506
Sau3AI	GATC	1 cut(s)	418
Sau96I	GGNCC	1 cut(s)	474
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	4 cut(s)	150, 413, 472, 512
SduI	GDGCHC	2 cut(s)	177, 224
SfaNI	GCATC	1 cut(s)	500
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	3 cut(s)	15, 192, 247
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	4 cut(s)	148, 411, 470, 510
TaaI	ACNGT	2 cut(s)	268, 547
TasI	AATT	3 cut(s)	15, 192, 247
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	42, 451, 505
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	5 cut(s)	38, 276, 389, 446, 489
TspRI	CASTG	1 cut(s)	273
XapI	RAATTY	1 cut(s)	247
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.