Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014653.1

Orthogroup ID

OG0012972

Physical Location & Seq

Genomic Coordinates Forward (+)

7287 .. 7838

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014653.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggggaggagaaaaattgagatgaagaaggtgatggacagcagctccaggcaggtaactttctccaagcgcagaaccggactttttaagaaagctcatgagattgctaccctctgtggtgctgaggtggccatcgttgttttctctccaggaggcaagcccttctcatttggtaacccaaatgtggactcagtagcagacaggtttctaaatcaggaggaagaggacaacactgatgatcgtggtgttcgtcgttctggaaaagtagtggagaggctaaaccaacagctcgccgatgttgtgaagaatttggaggctgagaagaaaaggggtgaggtgattgctaaggcactagtgaaagcagaaacgaaatgggggcttacaatccaggagaggagccaaggtgagcttgtaaaagtgaagcagtcgcttgaggagttgcgcgagagtgtgaaggcaagagagagtgacatggaggcatcgtcttctttgctgctcctggcaaacaagccggtgaaagagactaagaagactgttgctaaaagtggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

183

Amino Acids

20.35

Weight (kDa)

9.68

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34440 AT3G66656
fragaria_vesca	FvH4_3g05940 FvH4_3g36320
malus_domestica	MD05G1287100.v1.1 MD10G1264500.v1.1
prunus_persica	Prupe.4G077800_v2.0.a1
pyrus_communis	pycom05g26560
rosa_chinensis	RchiOBHm_Chr5g0013531
rosa_laevigata	RLG00000032023
rosa_multiflora	Rmu_sc0014653.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063040
rosa_rugosa	Rorug05G0010300
rosa_samantha	Rh5AG105300 Rh5BG101400 Rh5CG113400 Rh5DG100100
rosa_wichuraiana	Rw5G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccII	CGCG	1 cut(s)	444
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	307
AfiI	CCNNNNNNNGG	1 cut(s)	184
AhlI	ACTAGT	1 cut(s)	352
AjnI	CCWGG	4 cut(s)	47, 148, 387, 498
AluBI	AGCT	4 cut(s)	45, 95, 289, 409
AluI	AGCT	4 cut(s)	45, 95, 289, 409
Alw26I	GTCTC	1 cut(s)	515
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	42, 493
ApoI	RAATTY	1 cut(s)	307
AspLEI	GCGC	2 cut(s)	72, 444
AsuHPI	GGTGA	5 cut(s)	43, 344, 349, 416, 526
BalI	TGGCCA	1 cut(s)	131
BbsI	GAAGAC	2 cut(s)	477, 536
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	54, 480
BccI	CCATC	2 cut(s)	28, 140
BciT130I	CCWGG	4 cut(s)	49, 150, 389, 500
BcoDI	GTCTC	1 cut(s)	515
BcuI	ACTAGT	1 cut(s)	352
BfaI	CTAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	43, 494
BlsI	GCNGC	2 cut(s)	44, 495
Bme1390I	CCNGG	4 cut(s)	49, 150, 389, 500
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	4 cut(s)	49, 150, 389, 500
BmsI	GCATC	1 cut(s)	488
BpiI	GAAGAC	2 cut(s)	477, 536
BpmI	CTGGAG	2 cut(s)	31, 132
Bpu10I	CCTNAGC	2 cut(s)	123, 345
BpuEI	CTTGAG	1 cut(s)	452
BsaJI	CCNNGG	1 cut(s)	400
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	6 cut(s)	29, 59, 388, 418, 467, 497
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse118I	RCCGGY	1 cut(s)	511
BseBI	CCWGG	4 cut(s)	49, 150, 389, 500
BseDI	CCNNGG	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMII	CTCAG	3 cut(s)	114, 204, 309
BseRI	GAGGAG	3 cut(s)	22, 409, 449
BseXI	GCAGC	2 cut(s)	54, 480
Bsh1236I	CGCG	1 cut(s)	444
BshFI	GGCC	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	78, 512
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	515
BsnI	GGCC	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	238
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	3 cut(s)	115, 203, 310
BspFNI	CGCG	1 cut(s)	444
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	398
BspMI	ACCTGC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	511
BssAI	RCCGGY	1 cut(s)	511
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	1 cut(s)	238
BssT1I	CCWWGG	1 cut(s)	400
Bst2UI	CCWGG	4 cut(s)	49, 150, 389, 500
Bst4CI	ACNGT	1 cut(s)	535
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	158, 291
BstDEI	CTNAG	5 cut(s)	123, 190, 318, 345, 525
BstEII	GGTNACC	1 cut(s)	173
BstFNI	CGCG	1 cut(s)	444
BstHHI	GCGC	2 cut(s)	72, 444
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	515
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	4 cut(s)	49, 150, 389, 500
BstPI	GGTNACC	1 cut(s)	173
BstSCI	CCNGG	4 cut(s)	47, 148, 387, 498
BstUI	CGCG	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	54, 480
BstV2I	GAAGAC	2 cut(s)	477, 536
BsuRI	GGCC	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	158, 291
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	2 cut(s)	72, 444
Cfr10I	RCCGGY	1 cut(s)	511
CviAII	CATG	2 cut(s)	98, 472
DdeI	CTNAG	5 cut(s)	123, 190, 318, 345, 525
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	400
Eco91I	GGTNACC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	173
EcoRII	CCWGG	4 cut(s)	47, 148, 387, 498
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	2 cut(s)	101, 475
FaiI	YATR	2 cut(s)	99, 473
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	2 cut(s)	97, 471
Fnu4HI	GCNGC	2 cut(s)	43, 494
Fsp4HI	GCNGC	2 cut(s)	43, 494
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	2 cut(s)	71, 443
GluI	GCNGC	2 cut(s)	43, 494
GsuI	CTGGAG	2 cut(s)	31, 132
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	2 cut(s)	78, 512
HhaI	GCGC	2 cut(s)	72, 444
Hin1II	CATG	2 cut(s)	101, 475
Hin6I	GCGC	2 cut(s)	70, 442
HinP1I	GCGC	2 cut(s)	70, 442
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	2 cut(s)	78, 512
HphI	GGTGA	5 cut(s)	43, 344, 349, 416, 526
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188III	TCNNGA	3 cut(s)	98, 215, 258
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	255
HpyAV	CCTTC	3 cut(s)	22, 172, 448
HpyCH4III	ACNGT	1 cut(s)	535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	5 cut(s)	123, 190, 318, 345, 525
Hsp92II	CATG	2 cut(s)	101, 475
HspAI	GCGC	2 cut(s)	70, 442
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	3 cut(s)	50, 396, 501
Lsp1109I	GCAGC	2 cut(s)	54, 480
LweI	GCATC	1 cut(s)	488
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	3 cut(s)	55, 173, 467
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	6 cut(s)	37, 233, 316, 334, 477, 541
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	2 cut(s)	15, 307
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	182
Mox20I	TGGCCA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	131
MspI	CCGG	2 cut(s)	78, 512
MspR9I	CCNGG	4 cut(s)	49, 150, 389, 500
MvaI	CCWGG	4 cut(s)	49, 150, 389, 500
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	2 cut(s)	101, 475
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	467
PagI	TCATGA	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	247
PfoI	TCCNGGA	2 cut(s)	148, 387
PkrI	GCNGC	2 cut(s)	44, 495
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp6I	CCWGG	4 cut(s)	47, 148, 387, 498
PspEI	GGTNACC	1 cut(s)	173
PspGI	CCWGG	4 cut(s)	47, 148, 387, 498
PspN4I	GGNNCC	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	43, 494
Sau3AI	GATC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	4 cut(s)	49, 150, 389, 500
SfaNI	GCATC	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SpeI	ACTAGT	1 cut(s)	352
Sse9I	AATT	2 cut(s)	15, 307
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	4 cut(s)	47, 148, 387, 498
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	1 cut(s)	535
TasI	AATT	2 cut(s)	15, 307
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	467
TseI	GCWGC	2 cut(s)	42, 493
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	238
XapI	RAATTY	1 cut(s)	307
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.