FvH4_3g36320
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012972
Physical Location & Seq
Forward (+)
31141490 .. 31142280
791 bp
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UTR
Exon/CDS
Intron
FvH4_3g36320.t1

Sequence Viewer

Length: 555 bp
ATGGGGAGGAGAAAAATTGAGATGAAAAGGGTGATCGATAGCAACTCCAGGCAGGTGACTTTCTCCAAGCGCAGAAATGGTCTTTTCAAGAAAGCTCACGAGATTGCCACTCTCTGTGGTGCTGAGGTGGGAATCGTTGTTTTCTCTCCCGGAGGCAAGCCCTTCTCATTTGGGCACCCAAATGTGGACTCAGTAGCAGACAGGTTTCTAAATAGGGAGGAAGATGAAGACAACACTGATGATCGTGGTGTTCGTCGTTCTGGAAAAGTTGTTGAGAGACTAAACCAACAGGTCGATGATCTTGTGAAGAAAGTGGAGGCTGAGAAGAAAAAGGGTGAGGTGATTCATAAGGCACTAGTGAAAGCAAAAACTAAATGGGGGCTTCCGGTCCAGGATATGAGTCAGAGTGAGCTGGTAAAAGAGAAGCAGTCGCTTGAGGAGTTGAGAGAGAGTGTGATGGCAAGAGTGACTGACATGGAGGCATCGTCTTCTTTGCTGCTCCTGGCAAACAAGCCGGTGAAAGAGACTGAGAAGAATGTTGCTAAAAGTGGCTGA

Protein Analysis

185

Amino Acids

20.63

Weight (kDa)

9.49

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 12 - 57 5.2e-25 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012972)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34440 AT3G66656
fragaria_vesca FvH4_3g05940 FvH4_3g36320
malus_domestica MD05G1287100.v1.1 MD10G1264500.v1.1
prunus_persica Prupe.4G077800_v2.0.a1
pyrus_communis pycom05g26560
rosa_chinensis RchiOBHm_Chr5g0013531
rosa_laevigata RLG00000032023
rosa_multiflora Rmu_sc0014653.1_g000002
rosa_roxburghii Rroxscaffold_1G00063040
rosa_rugosa Rorug05G0010300
rosa_samantha Rh5AG105300 Rh5BG101400 Rh5CG113400 Rh5DG100100
rosa_wichuraiana Rw5G009160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 1 cut(s) 88
AhlI ACTAGT 1 cut(s) 355
AjnI CCWGG 3 cut(s) 47, 390, 501
AluBI AGCT 2 cut(s) 95, 412
AluI AGCT 2 cut(s) 95, 412
Alw26I GTCTC 2 cut(s) 271, 518
ApeKI GCWGC 1 cut(s) 496
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 388
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 5 cut(s) 43, 67, 347, 352, 529
AvaII GGWCC 1 cut(s) 388
BaeGI GKGCMC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 174
BauI CACGAG 1 cut(s) 98
BbsI GAAGAC 2 cut(s) 234, 480
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 483
BccI CCATC 1 cut(s) 451
BciT130I CCWGG 3 cut(s) 49, 392, 503
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 271, 518
BcuI ACTAGT 1 cut(s) 355
BfaI CTAG 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 1 cut(s) 497
BlsI GCNGC 1 cut(s) 498
Bme1390I CCNGG 4 cut(s) 49, 150, 392, 503
Bme18I GGWCC 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 4 cut(s) 49, 150, 392, 503
BmsI GCATC 1 cut(s) 491
BpiI GAAGAC 2 cut(s) 234, 480
BpmI CTGGAG 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 150
Bsa29I ATCGAT 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 385
BsaXI ACNNNNNCTCC 2 cut(s) 470, 500
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse118I RCCGGY 1 cut(s) 514
BseBI CCWGG 3 cut(s) 49, 392, 503
BseCI ATCGAT 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 4 cut(s) 114, 204, 312, 519
BseRI GAGGAG 2 cut(s) 22, 452
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 1 cut(s) 483
BshNI GGYRCC 1 cut(s) 174
BshVI ATCGAT 1 cut(s) 36
BsiSI CCGG 3 cut(s) 150, 386, 515
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 2 cut(s) 271, 518
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 3 cut(s) 33, 241, 298
BspCNI CTCAG 4 cut(s) 115, 203, 313, 520
BspDI ATCGAT 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 176
BspMI ACCTGC 1 cut(s) 43
BspT107I GGYRCC 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 514
BssMI GATC 3 cut(s) 33, 241, 298
BssSI CACGAG 1 cut(s) 98
Bst2BI CACGAG 1 cut(s) 98
Bst2UI CCWGG 3 cut(s) 49, 392, 503
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 4 cut(s) 123, 190, 321, 528
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 3 cut(s) 36, 244, 301
BstMAI GTCTC 2 cut(s) 271, 518
BstMBI GATC 3 cut(s) 33, 241, 298
BstNI CCWGG 3 cut(s) 49, 392, 503
BstSCI CCNGG 4 cut(s) 47, 148, 390, 501
BstSLI GKGCMC 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 483
BstV2I GAAGAC 2 cut(s) 234, 480
Bsu15I ATCGAT 1 cut(s) 36
BsuTUI ATCGAT 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 158
CfoI GCGC 1 cut(s) 72
Cfr10I RCCGGY 1 cut(s) 514
Cfr13I GGNCC 1 cut(s) 388
ClaI ATCGAT 1 cut(s) 36
CviAII CATG 1 cut(s) 475
CviJI RGCY 7 cut(s) 95, 160, 320, 382, 412, 514, 552
CviKI_1 RGCY 7 cut(s) 95, 160, 320, 382, 412, 514, 552
DdeI CTNAG 4 cut(s) 123, 190, 321, 528
DpnI GATC 3 cut(s) 35, 243, 300
DpnII GATC 3 cut(s) 33, 241, 298
Eco47I GGWCC 1 cut(s) 388
EcoRII CCWGG 3 cut(s) 47, 390, 501
FaeI CATG 1 cut(s) 478
FaiI YATR 3 cut(s) 348, 398, 476
FatI CATG 1 cut(s) 474
Fnu4HI GCNGC 1 cut(s) 497
Fsp4HI GCNGC 1 cut(s) 497
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 497
GsuI CTGGAG 1 cut(s) 31
HapII CCGG 3 cut(s) 150, 386, 515
HhaI GCGC 1 cut(s) 72
Hin1II CATG 1 cut(s) 478
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 4 cut(s) 132, 188, 343, 400
HpaII CCGG 3 cut(s) 150, 386, 515
HphI GGTGA 5 cut(s) 43, 67, 347, 352, 529
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 405
Hpy188III TCNNGA 3 cut(s) 88, 98, 261
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 258
HpyAV CCTTC 1 cut(s) 172
HpyF3I CTNAG 4 cut(s) 123, 190, 321, 528
Hsp92II CATG 1 cut(s) 478
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 3 cut(s) 33, 241, 298
LmnI GCTCC 1 cut(s) 504
Lsp1109I GCAGC 1 cut(s) 483
LweI GCATC 1 cut(s) 491
MaeI CTAG 1 cut(s) 356
MaeIII GTNAC 2 cut(s) 55, 466
MalI GATC 3 cut(s) 35, 243, 300
MboI GATC 3 cut(s) 33, 241, 298
MboII GAAGA 6 cut(s) 233, 239, 319, 337, 480, 544
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 1 cut(s) 15
MlyI GAGTC 2 cut(s) 182, 409
MnlI CCTC 7 cut(s) 118, 146, 211, 310, 331, 430, 472
MslI CAYNNNNRTG 1 cut(s) 180
MspI CCGG 3 cut(s) 150, 386, 515
MspR9I CCNGG 4 cut(s) 49, 150, 392, 503
MvaI CCWGG 3 cut(s) 49, 392, 503
NciI CCSGG 1 cut(s) 150
NdeII GATC 3 cut(s) 33, 241, 298
NlaIII CATG 1 cut(s) 478
NlaIV GGNNCC 1 cut(s) 176
NmuCI GTSAC 2 cut(s) 55, 466
PaqCI CACCTGC 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 250
PfeI GAWTC 2 cut(s) 132, 343
PfoI TCCNGGA 2 cut(s) 148, 390
PkrI GCNGC 1 cut(s) 498
PleI GAGTC 2 cut(s) 182, 408
PpsI GAGTC 2 cut(s) 182, 408
Psp6I CCWGG 3 cut(s) 47, 390, 501
PspGI CCWGG 3 cut(s) 47, 390, 501
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 388
RseI CAYNNNNRTG 1 cut(s) 180
SatI GCNGC 1 cut(s) 497
Sau3AI GATC 3 cut(s) 33, 241, 298
Sau96I GGNCC 1 cut(s) 388
SchI GAGTC 2 cut(s) 182, 409
ScrFI CCNGG 4 cut(s) 49, 150, 392, 503
SduI GDGCHC 1 cut(s) 177
SetI ASST 7 cut(s) 57, 97, 129, 206, 294, 342, 414
SfaNI GCATC 1 cut(s) 491
SinI GGWCC 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
SpeI ACTAGT 1 cut(s) 355
Sse9I AATT 1 cut(s) 15
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 4 cut(s) 47, 148, 390, 501
TaqI TCGA 2 cut(s) 36, 294
TasI AATT 1 cut(s) 15
TfiI GAWTC 2 cut(s) 132, 343
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 2 cut(s) 55, 466
TseI GCWGC 1 cut(s) 496
Tsp45I GTSAC 2 cut(s) 55, 466
TspDTI ATGAA 3 cut(s) 38, 240, 335
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 388
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.