Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012972

Physical Location & Seq

Genomic Coordinates Reverse (-)

635573 .. 636592

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0010300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAGTTTCTGAATCGGTTGCTCCGATGTCAAAGATGCCGGAACGCATTTGAAGCTCATGAATCGCAGGATGGTCTCAGGAATCAAGAGCCAACGCAATTCTGGACACAGTGCCCCTTTTGTTGCGCAATGTCTCAATACCGCCGAGACACTCTGGATCGCTTGGTCAATTGTCAGATATGCCGTCAAGCATTTGGAGCTCATGAAATGAAGAAGAAAAGCGATCAATCTCTCAGGAATCAATTTAGCAATACCCTGGAATCCGCCCCGAGTCCCGCTAAAGCAGGTAACTTCATCGATCTCTCTGCTGAAACCCTGAACTATTACGATAGTGATGAAGAGGTTAGGGTTCTTAGGTTCAAACCCTCCAATATCCCTTTTGGGAAAAGTAAGCGAATAGAAACCTCAAACGAAGGTTCTTGTTCTACTTCCAAAGCCCCATCTTTTGTTTGTGAAATTTGTGTGGAGACCAAGCCGGCACACGAATCGTTTGGTATCAAAAATTGCAGCCATGTTTATTGTACTGATTGCGTTGGCAAATACGTGGACTCGAAGCTCCAAGAAAACATAGCAAGCATTGGGTGCCTTGTACCCGATTGCAAAGGGTCACTTGATCCCGAATATTGCCATTCGATTCTAAAACCCGATGTGTTTGAAAAGTGGGGAACAAGGTTGTGCGAAGATGTGATTATTGGGTCTCAGAAATTTTACTGCCCCTTTAAGGACTGCTCCGCAATGTTGATCGACGATGGGACAGAGGTAGTGAGAGAATCAGAGTGCCCTAACTGTAAAAGATTGTTCTGTGCGCAGTGTAAGGTTCCTTGGCACGCGGGGATTACTTGTGCCGAGTTTAAGAGGCGGAATAAGGATGATACTGAAAAGGATGATCTTGTTATGGAGAAACTTGCGTACAAGAAGCACTGGAGAAAGTGCCCAACGTGTGGGATCTATGTAGAAAGATCAGGAGGCTGCACAACAATGCGATGCAGGTCTGTTTATCTTTCTGCTCTCTTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

339

Amino Acids

38.67

Weight (kDa)

7.87

Isoelectric Point (pI)

47.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	225 - 281	2.5e-10	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34440 AT3G66656
fragaria_vesca	FvH4_3g05940 FvH4_3g36320
malus_domestica	MD05G1287100.v1.1 MD10G1264500.v1.1
prunus_persica	Prupe.4G077800_v2.0.a1
pyrus_communis	pycom05g26560
rosa_chinensis	RchiOBHm_Chr5g0013531
rosa_laevigata	RLG00000032023
rosa_multiflora	Rmu_sc0014653.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063040
rosa_rugosa	Rorug05G0010300
rosa_samantha	Rh5AG105300 Rh5BG101400 Rh5CG113400 Rh5DG100100
rosa_wichuraiana	Rw5G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	127, 807
Acc36I	ACCTGC	2 cut(s)	275, 978
AccB1I	GGYRCC	1 cut(s)	582
AccB7I	CCANNNNNTGG	1 cut(s)	941
AccII	CGCG	1 cut(s)	830
AciI	CCGC	6 cut(s)	142, 264, 276, 732, 830, 859
AclWI	GGATC	3 cut(s)	165, 608, 953
AcsI	RAATTY	2 cut(s)	456, 704
AfaI	GTAC	3 cut(s)	523, 591, 911
AfiI	CCNNNNNNNGG	2 cut(s)	721, 941
AflIII	ACRYGT	1 cut(s)	938
AgsI	TTSAA	3 cut(s)	53, 361, 656
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	3 cut(s)	56, 200, 556
AluI	AGCT	3 cut(s)	56, 200, 556
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	5 cut(s)	80, 138, 141, 461, 702
AlwI	GGATC	3 cut(s)	165, 608, 953
Ama87I	CYCGRG	1 cut(s)	268
ApeKI	GCWGC	2 cut(s)	507, 969
ApoI	RAATTY	2 cut(s)	456, 704
AspLEI	GCGC	2 cut(s)	128, 808
AvaI	CYCGRG	1 cut(s)	268
BaeGI	GKGCMC	3 cut(s)	116, 782, 935
BanI	GGYRCC	1 cut(s)	582
BanII	GRGCYC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	2 cut(s)	519, 956
BccI	CCATC	3 cut(s)	65, 448, 743
BceAI	ACGGC	1 cut(s)	168
BcgI	CGANNNNNNTGC	4 cut(s)	287, 321, 468, 502
BciT130I	CCWGG	1 cut(s)	257
BcoDI	GTCTC	5 cut(s)	80, 138, 141, 461, 702
BfuAI	ACCTGC	2 cut(s)	275, 978
BisI	GCNGC	2 cut(s)	508, 970
BlsI	GCNGC	2 cut(s)	509, 971
Bme1390I	CCNGG	1 cut(s)	257
BmeT110I	CYCGRG	1 cut(s)	268
BmiI	GGNNCC	2 cut(s)	584, 819
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	2 cut(s)	26, 974
BpmI	CTGGAG	1 cut(s)	943
Bsa29I	ATCGAT	1 cut(s)	297
BsaAI	YACGTR	1 cut(s)	544
BsaI	GGTCTC	3 cut(s)	80, 461, 702
BsaJI	CCNNGG	2 cut(s)	255, 821
Bsc4I	CCNNNNNNNGG	2 cut(s)	721, 941
Bse118I	RCCGGY	1 cut(s)	475
Bse1I	ACTGG	1 cut(s)	926
Bse3DI	GCAATG	2 cut(s)	135, 741
BseBI	CCWGG	1 cut(s)	257
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	255, 821
BseGI	GGATG	3 cut(s)	76, 874, 889
BseLI	CCNNNNNNNGG	2 cut(s)	721, 941
BseMI	GCAATG	2 cut(s)	135, 741
BseMII	CTCAG	3 cut(s)	91, 247, 713
BseNI	ACTGG	1 cut(s)	926
BseSI	GKGCMC	3 cut(s)	116, 782, 935
BseXI	GCAGC	2 cut(s)	519, 956
BsgI	GTGCAG	1 cut(s)	955
Bsh1236I	CGCG	1 cut(s)	830
BshNI	GGYRCC	1 cut(s)	582
BshVI	ATCGAT	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	202
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	2 cut(s)	40, 476
BslFI	GGGAC	2 cut(s)	258, 766
BslI	CCNNNNNNNGG	2 cut(s)	721, 941
BsmAI	GTCTC	5 cut(s)	80, 138, 141, 461, 702
BsmFI	GGGAC	2 cut(s)	258, 766
Bso31I	GGTCTC	3 cut(s)	80, 461, 702
BsoBI	CYCGRG	1 cut(s)	268
Bsp1286I	GDGCHC	4 cut(s)	116, 202, 782, 935
Bsp143I	GATC	8 cut(s)	157, 223, 298, 613, 741, 886, 945, 959
BspACI	CCGC	6 cut(s)	142, 264, 276, 732, 830, 859
BspCNI	CTCAG	3 cut(s)	90, 246, 712
BspDI	ATCGAT	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	830
BspHI	TCATGA	2 cut(s)	58, 202
BspLI	GGNNCC	2 cut(s)	584, 819
BspMI	ACCTGC	2 cut(s)	275, 978
BspPI	GGATC	3 cut(s)	165, 608, 953
BspT107I	GGYRCC	1 cut(s)	582
BspTNI	GGTCTC	3 cut(s)	80, 461, 702
BsrDI	GCAATG	2 cut(s)	135, 741
BsrFI	RCCGGY	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	926
BssAI	RCCGGY	1 cut(s)	475
BssECI	CCNNGG	2 cut(s)	255, 821
BssMI	GATC	8 cut(s)	157, 223, 298, 613, 741, 886, 945, 959
BssT1I	CCWWGG	1 cut(s)	821
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	111, 788
Bst6I	CTCTTC	2 cut(s)	333, 1016
BstAPI	GCANNNNNTGC	1 cut(s)	582
BstBAI	YACGTR	1 cut(s)	544
BstC8I	GCNNGC	3 cut(s)	477, 574, 828
BstDEI	CTNAG	4 cut(s)	77, 233, 353, 699
BstF5I	GGATG	3 cut(s)	76, 874, 889
BstFNI	CGCG	1 cut(s)	830
BstHHI	GCGC	2 cut(s)	128, 808
BstKTI	GATC	8 cut(s)	160, 226, 301, 616, 744, 889, 948, 962
BstMAI	GTCTC	5 cut(s)	80, 138, 141, 461, 702
BstMBI	GATC	8 cut(s)	157, 223, 298, 613, 741, 886, 945, 959
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 197, 582
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	255
BstSLI	GKGCMC	3 cut(s)	116, 782, 935
BstUI	CGCG	1 cut(s)	830
BstV1I	GCAGC	2 cut(s)	519, 956
BstX2I	RGATCY	1 cut(s)	945
BstYI	RGATCY	1 cut(s)	945
Bsu15I	ATCGAT	1 cut(s)	297
BsuTUI	ATCGAT	1 cut(s)	297
BtgZI	GCGATG	1 cut(s)	997
BtsCI	GGATG	3 cut(s)	76, 874, 889
BtsI	GCAGTG	1 cut(s)	815
BtsIMutI	CAGTG	3 cut(s)	116, 815, 919
BveI	ACCTGC	2 cut(s)	275, 978
Cac8I	GCNNGC	3 cut(s)	477, 574, 828
CciI	TCATGA	2 cut(s)	58, 202
CfoI	GCGC	2 cut(s)	128, 808
Cfr10I	RCCGGY	1 cut(s)	475
ClaI	ATCGAT	1 cut(s)	297
Csp6I	GTAC	3 cut(s)	522, 590, 910
CviAII	CATG	3 cut(s)	59, 203, 512
CviJI	RGCY	8 cut(s)	56, 91, 200, 437, 475, 510, 556, 969
CviKI_1	RGCY	8 cut(s)	56, 91, 200, 437, 475, 510, 556, 969
CviQI	GTAC	3 cut(s)	522, 590, 910
DdeI	CTNAG	4 cut(s)	77, 233, 353, 699
DpnI	GATC	8 cut(s)	159, 225, 300, 615, 743, 888, 947, 961
DpnII	GATC	8 cut(s)	157, 223, 298, 613, 741, 886, 945, 959
Eam1104I	CTCTTC	2 cut(s)	333, 1016
EarI	CTCTTC	2 cut(s)	333, 1016
EciI	GGCGGA	2 cut(s)	253, 874
Ecl136II	GAGCTC	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	821
Eco24I	GRGCYC	1 cut(s)	202
Eco31I	GGTCTC	3 cut(s)	80, 461, 702
Eco53kI	GAGCTC	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	821
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	821
FaeI	CATG	3 cut(s)	62, 206, 515
FaiI	YATR	7 cut(s)	60, 181, 204, 513, 569, 896, 951
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	2 cut(s)	258, 766
FatI	CATG	3 cut(s)	58, 202, 511
FauI	CCCGC	2 cut(s)	283, 823
Fnu4HI	GCNGC	2 cut(s)	508, 970
FokI	GGATG	3 cut(s)	83, 881, 896
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	2 cut(s)	508, 970
FspI	TGCGCA	2 cut(s)	127, 807
GlaI	GCGC	2 cut(s)	127, 807
GluI	GCNGC	2 cut(s)	508, 970
GsuI	CTGGAG	1 cut(s)	943
HapII	CCGG	2 cut(s)	40, 476
HhaI	GCGC	2 cut(s)	128, 808
Hin1II	CATG	3 cut(s)	62, 206, 515
Hin6I	GCGC	2 cut(s)	126, 806
HinP1I	GCGC	2 cut(s)	126, 806
HpaII	CCGG	2 cut(s)	40, 476
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	5 cut(s)	12, 26, 177, 702, 775
Hpy188III	TCNNGA	9 cut(s)	59, 79, 86, 103, 155, 203, 235, 617, 963
Hpy8I	GTNNAC	1 cut(s)	547
Hpy99I	CGWCG	1 cut(s)	749
HpyAV	CCTTC	1 cut(s)	407
HpyCH4III	ACNGT	2 cut(s)	111, 788
HpyCH4IV	ACGT	2 cut(s)	543, 938
HpyCH4V	TGCA	4 cut(s)	507, 600, 972, 987
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 197, 582
HpyF3I	CTNAG	4 cut(s)	77, 233, 353, 699
HpySE526I	ACGT	2 cut(s)	543, 938
Hsp92II	CATG	3 cut(s)	62, 206, 515
HspAI	GCGC	2 cut(s)	126, 806
KroI	GCCGGC	1 cut(s)	475
KroNI	GCCGGC	1 cut(s)	477
Kzo9I	GATC	8 cut(s)	157, 223, 298, 613, 741, 886, 945, 959
LmnI	GCTCC	4 cut(s)	27, 197, 561, 734
Lsp1109I	GCAGC	2 cut(s)	519, 956
LweI	GCATC	2 cut(s)	26, 974
MaeII	ACGT	2 cut(s)	543, 938
MaeIII	GTNAC	2 cut(s)	287, 606
MalI	GATC	8 cut(s)	159, 225, 300, 615, 743, 888, 947, 961
MboI	GATC	8 cut(s)	157, 223, 298, 613, 741, 886, 945, 959
MboII	GAAGA	5 cut(s)	223, 226, 350, 692, 1003
MfeI	CAATTG	1 cut(s)	169
MflI	RGATCY	1 cut(s)	945
MhlI	GDGCHC	4 cut(s)	116, 202, 782, 935
MluCI	AATT	6 cut(s)	98, 169, 242, 456, 502, 704
MlyI	GAGTC	2 cut(s)	280, 542
MnlI	CCTC	6 cut(s)	334, 376, 415, 751, 849, 959
MroNI	GCCGGC	1 cut(s)	475
MseI	TTAA	2 cut(s)	720, 852
MslI	CAYNNNNRTG	1 cut(s)	977
MspI	CCGG	2 cut(s)	40, 476
MspR9I	CCNGG	1 cut(s)	257
MunI	CAATTG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	830
MwoI	GCNNNNNNNGC	3 cut(s)	53, 197, 582
NaeI	GCCGGC	1 cut(s)	477
NdeII	GATC	8 cut(s)	157, 223, 298, 613, 741, 886, 945, 959
NgoMIV	GCCGGC	1 cut(s)	475
NlaIII	CATG	3 cut(s)	62, 206, 515
NlaIV	GGNNCC	2 cut(s)	584, 819
NmeAIII	GCCGAG	2 cut(s)	170, 871
NmuCI	GTSAC	1 cut(s)	606
NsbI	TGCGCA	2 cut(s)	127, 807
PagI	TCATGA	2 cut(s)	58, 202
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PdiI	GCCGGC	1 cut(s)	477
PfeI	GAWTC	8 cut(s)	13, 62, 82, 238, 260, 485, 634, 770
PflMI	CCANNNNNTGG	1 cut(s)	941
PkrI	GCNGC	2 cut(s)	509, 971
PleI	GAGTC	2 cut(s)	279, 542
PpsI	GAGTC	2 cut(s)	279, 542
Ppu21I	YACGTR	1 cut(s)	544
Psp124BI	GAGCTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	584, 819
PsuI	RGATCY	1 cut(s)	945
RsaI	GTAC	3 cut(s)	523, 591, 911
RsaNI	GTAC	3 cut(s)	522, 590, 910
RseI	CAYNNNNRTG	1 cut(s)	977
SacI	GAGCTC	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	720, 852
SatI	GCNGC	2 cut(s)	508, 970
Sau3AI	GATC	8 cut(s)	157, 223, 298, 613, 741, 886, 945, 959
SchI	GAGTC	2 cut(s)	280, 542
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	4 cut(s)	116, 202, 782, 935
SfaNI	GCATC	2 cut(s)	26, 974
SmiMI	CAYNNNNRTG	1 cut(s)	977
Sse9I	AATT	6 cut(s)	98, 169, 242, 456, 502, 704
SsiI	CCGC	6 cut(s)	142, 264, 276, 732, 830, 859
SspI	AATATT	1 cut(s)	623
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	821
TaaI	ACNGT	2 cut(s)	111, 788
TaiI	ACGT	2 cut(s)	546, 941
TaqI	TCGA	4 cut(s)	297, 551, 632, 744
TasI	AATT	6 cut(s)	98, 169, 242, 456, 502, 704
TatI	WGTACW	1 cut(s)	521
TfiI	GAWTC	8 cut(s)	13, 62, 82, 238, 260, 485, 634, 770
Tru1I	TTAA	2 cut(s)	720, 852
Tru9I	TTAA	2 cut(s)	720, 852
TscAI	CASTG	3 cut(s)	116, 815, 926
TseFI	GTSAC	1 cut(s)	606
TseI	GCWGC	2 cut(s)	507, 969
Tsp45I	GTSAC	1 cut(s)	606
TspDTI	ATGAA	6 cut(s)	75, 219, 224, 283, 351, 1003
TspRI	CASTG	3 cut(s)	116, 815, 926
Van91I	CCANNNNNTGG	1 cut(s)	941
XapI	RAATTY	2 cut(s)	456, 704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.