FvH4_3g05940
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012972
Physical Location & Seq
Reverse (-)
3447824 .. 3448546
723 bp
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UTR
Exon/CDS
Intron
FvH4_3g05940.t1

Sequence Viewer

Length: 549 bp
ATGGGGAGGAGAAAAATTGAGATGAAGAGGGTGATGGATAACAACTCCAGGCAGGTGACTTTCTCCAAGCGCAGAACTGGTCTTTTCAAGAAAGCTCACGAGATTGCCACTCTCTGTGGTGCCGAGGTTGCCATCGTTGTTTTCTCTCCCGGAGGCAAGCCCTTCTCATTTGGGCACCCAAATGTGGACTCAGTAGCAGACAGGTTTCTAAATCGGGAGGAAGATGAAGACAACACTGATGATCGTGGTGTTCGTCGTTCTGGAAAAGTAGTTGAGAGACTAAACCAACAGGTTGATGATCTTGTGAAGAAATTGAAGGCTGAGAAGAAAAAGGGTGAGGTGCTTGATAGGGCACTGTTGAAAGCAAAAACTAAATGGGAGGTTCTGATCCAGGAGATGAGTGAGCTGGTAGAAGCGAAGCAGTCGCTTGAGGATTTGAGAGAGAGTGTAATGGCAAGAGTGAGTGACATGGAGGCATCGTCTTCTTTGCTGCTCCTGGCAAACAAGCCGATGAAAGAGACTGAGAAGAATGTTGCTAAAAGTGGCTGA

Protein Analysis

183

Amino Acids

20.55

Weight (kDa)

9.4

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 11 - 57 3.6e-25 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012972)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34440 AT3G66656
fragaria_vesca FvH4_3g05940 FvH4_3g36320
malus_domestica MD05G1287100.v1.1 MD10G1264500.v1.1
prunus_persica Prupe.4G077800_v2.0.a1
pyrus_communis pycom05g26560
rosa_chinensis RchiOBHm_Chr5g0013531
rosa_laevigata RLG00000032023
rosa_multiflora Rmu_sc0014653.1_g000002
rosa_roxburghii Rroxscaffold_1G00063040
rosa_rugosa Rorug05G0010300
rosa_samantha Rh5AG105300 Rh5BG101400 Rh5CG113400 Rh5DG100100
rosa_wichuraiana Rw5G009160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 2 cut(s) 119, 174
AclWI GGATC 1 cut(s) 382
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 3 cut(s) 88, 316, 361
AjnI CCWGG 3 cut(s) 47, 390, 495
AluBI AGCT 2 cut(s) 95, 406
AluI AGCT 2 cut(s) 95, 406
Alw26I GTCTC 2 cut(s) 271, 512
AlwI GGATC 1 cut(s) 382
ApeKI GCWGC 1 cut(s) 490
AspLEI GCGC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 3 cut(s) 43, 67, 347
BaeGI GKGCMC 2 cut(s) 177, 355
BanI GGYRCC 2 cut(s) 119, 174
BauI CACGAG 1 cut(s) 98
BbsI GAAGAC 2 cut(s) 234, 474
BbvI GCAGC 1 cut(s) 477
BccI CCATC 2 cut(s) 28, 140
BciT130I CCWGG 3 cut(s) 49, 392, 497
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 271, 512
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 1 cut(s) 491
BlsI GCNGC 1 cut(s) 492
Bme1390I CCNGG 4 cut(s) 49, 150, 392, 497
BmiI GGNNCC 2 cut(s) 121, 176
BmrFI CCNGG 4 cut(s) 49, 150, 392, 497
BmsI GCATC 1 cut(s) 485
BpiI GAAGAC 2 cut(s) 234, 474
BpmI CTGGAG 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 82
BseBI CCWGG 3 cut(s) 49, 392, 497
BseDI CCNNGG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 3 cut(s) 204, 312, 513
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 1 cut(s) 22
BseSI GKGCMC 2 cut(s) 177, 355
BseXI GCAGC 1 cut(s) 477
BshNI GGYRCC 2 cut(s) 119, 174
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 2 cut(s) 271, 512
Bsp1286I GDGCHC 2 cut(s) 177, 355
Bsp143I GATC 3 cut(s) 241, 298, 387
BspCNI CTCAG 3 cut(s) 203, 313, 514
BspLI GGNNCC 2 cut(s) 121, 176
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 1 cut(s) 382
BspT107I GGYRCC 2 cut(s) 119, 174
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 3 cut(s) 241, 298, 387
BssSI CACGAG 1 cut(s) 98
Bst2BI CACGAG 1 cut(s) 98
Bst2UI CCWGG 3 cut(s) 49, 392, 497
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 3 cut(s) 190, 321, 522
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 3 cut(s) 244, 301, 390
BstMAI GTCTC 2 cut(s) 271, 512
BstMBI GATC 3 cut(s) 241, 298, 387
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 3 cut(s) 49, 392, 497
BstSCI CCNGG 4 cut(s) 47, 148, 390, 495
BstSLI GKGCMC 2 cut(s) 177, 355
BstV1I GCAGC 1 cut(s) 477
BstV2I GAAGAC 2 cut(s) 234, 474
BtsIMutI CAGTG 2 cut(s) 234, 353
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 158
CfoI GCGC 1 cut(s) 72
CviAII CATG 1 cut(s) 469
CviJI RGCY 6 cut(s) 95, 160, 320, 406, 508, 546
CviKI_1 RGCY 6 cut(s) 95, 160, 320, 406, 508, 546
DdeI CTNAG 3 cut(s) 190, 321, 522
DpnI GATC 3 cut(s) 243, 300, 389
DpnII GATC 3 cut(s) 241, 298, 387
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
EcoRII CCWGG 3 cut(s) 47, 390, 495
FaeI CATG 1 cut(s) 472
FaiI YATR 1 cut(s) 470
FatI CATG 1 cut(s) 468
Fnu4HI GCNGC 1 cut(s) 491
Fsp4HI GCNGC 1 cut(s) 491
GlaI GCGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 491
GsuI CTGGAG 1 cut(s) 31
HapII CCGG 1 cut(s) 150
HhaI GCGC 1 cut(s) 72
Hin1II CATG 1 cut(s) 472
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 1 cut(s) 188
HpaII CCGG 1 cut(s) 150
HphI GGTGA 3 cut(s) 43, 67, 347
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 387
Hpy188III TCNNGA 4 cut(s) 88, 98, 215, 261
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 258
HpyAV CCTTC 2 cut(s) 172, 310
HpyCH4III ACNGT 1 cut(s) 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 3 cut(s) 190, 321, 522
Hsp92II CATG 1 cut(s) 472
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 3 cut(s) 241, 298, 387
LmnI GCTCC 1 cut(s) 498
Lsp1109I GCAGC 1 cut(s) 477
LweI GCATC 1 cut(s) 485
MaeIII GTNAC 2 cut(s) 55, 464
MalI GATC 3 cut(s) 243, 300, 389
MboI GATC 3 cut(s) 241, 298, 387
MboII GAAGA 7 cut(s) 37, 233, 239, 319, 337, 474, 538
MhlI GDGCHC 2 cut(s) 177, 355
MluCI AATT 2 cut(s) 15, 311
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 8 cut(s) 21, 118, 146, 211, 331, 373, 424, 466
MslI CAYNNNNRTG 1 cut(s) 180
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 4 cut(s) 49, 150, 392, 497
MvaI CCWGG 3 cut(s) 49, 392, 497
MwoI GCNNNNNNNGC 1 cut(s) 128
NciI CCSGG 1 cut(s) 150
NdeII GATC 3 cut(s) 241, 298, 387
NlaIII CATG 1 cut(s) 472
NlaIV GGNNCC 2 cut(s) 121, 176
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 2 cut(s) 55, 464
PaqCI CACCTGC 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 250
PfoI TCCNGGA 2 cut(s) 148, 390
PkrI GCNGC 1 cut(s) 492
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
Psp6I CCWGG 3 cut(s) 47, 390, 495
PspGI CCWGG 3 cut(s) 47, 390, 495
PspN4I GGNNCC 2 cut(s) 121, 176
RseI CAYNNNNRTG 1 cut(s) 180
SatI GCNGC 1 cut(s) 491
Sau3AI GATC 3 cut(s) 241, 298, 387
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 4 cut(s) 49, 150, 392, 497
SduI GDGCHC 2 cut(s) 177, 355
SetI ASST 8 cut(s) 57, 97, 129, 206, 294, 342, 384, 408
SfaNI GCATC 1 cut(s) 485
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 2 cut(s) 15, 311
StyD4I CCNGG 4 cut(s) 47, 148, 390, 495
TaaI ACNGT 1 cut(s) 357
TasI AATT 2 cut(s) 15, 311
TscAI CASTG 2 cut(s) 241, 360
TseFI GTSAC 2 cut(s) 55, 464
TseI GCWGC 1 cut(s) 490
Tsp45I GTSAC 2 cut(s) 55, 464
TspDTI ATGAA 3 cut(s) 38, 240, 527
TspRI CASTG 2 cut(s) 241, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.