RchiOBHm_Chr5g0013531
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012972
Physical Location & Seq
Forward (+)
9109153 .. 9109704
552 bp
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UTR
Exon/CDS
Intron
PRQ29405

Sequence Viewer

Length: 552 bp
ATGGGGAGGAGAAAAATTGAGATGAAGAAGGTGATGGACAGCAGCTCCAGGCAGGTAACTTTCTCCAAGCGCAGAACCGGACTTTTTAAGAAAGCTCATGAGATTGCTACCCTCTGTGGTGCTGAGGTGGCCATCGTTGTTTTCTCTCCAGGAGGCAAGCCCTTCTCATTTGGTAACCCAAATGTGGACTCAGTAGCAGACAGGTTTCTAAATCAGGAGGAAGAGGACAACACTGATGATCGTGGTGTTCGTCGTTCTGGAAAAGTAGTGGAGAGGCTAAACCAACAGCTCGCCGATGTTGTGAAGAATTTGGAGGCTGAGAAGAAAAGGGGTGAGGTGATTGCTAAGGCACTAGTGAAAGCAGAAACGAAATGGGGGCTTACAATCCAGGAGAGGAGCCACGGTGAGCTTGTAAAAGTGAAGCAGTCGCTTGAGGAGTTGCACGAGAGTGTGAAGGCAAGAGAGAGTGACATGGAGGCATCGTCTTCTTTGCTGCTCCTGGCAAACAAGCCGGCGAAAGAGACTAAGAAGACTGTTGCTAAAAGTGGCTGA

Protein Analysis

183

Amino Acids

20.31

Weight (kDa)

9.59

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 11 - 57 2.4e-25 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012972)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34440 AT3G66656
fragaria_vesca FvH4_3g05940 FvH4_3g36320
malus_domestica MD05G1287100.v1.1 MD10G1264500.v1.1
prunus_persica Prupe.4G077800_v2.0.a1
pyrus_communis pycom05g26560
rosa_chinensis RchiOBHm_Chr5g0013531
rosa_laevigata RLG00000032023
rosa_multiflora Rmu_sc0014653.1_g000002
rosa_roxburghii Rroxscaffold_1G00063040
rosa_rugosa Rorug05G0010300
rosa_samantha Rh5AG105300 Rh5BG101400 Rh5CG113400 Rh5DG100100
rosa_wichuraiana Rw5G009160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 43
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 307
AfiI CCNNNNNNNGG 1 cut(s) 184
AhlI ACTAGT 1 cut(s) 352
AjnI CCWGG 4 cut(s) 47, 148, 387, 498
AleI CACNNNNGTG 1 cut(s) 447
AluBI AGCT 4 cut(s) 45, 95, 289, 409
AluI AGCT 4 cut(s) 45, 95, 289, 409
Alw26I GTCTC 1 cut(s) 515
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 42, 493
ApoI RAATTY 1 cut(s) 307
AspLEI GCGC 1 cut(s) 72
AsuHPI GGTGA 4 cut(s) 43, 344, 349, 416
BalI TGGCCA 1 cut(s) 131
BauI CACGAG 1 cut(s) 443
BbsI GAAGAC 2 cut(s) 477, 536
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 54, 480
BccI CCATC 2 cut(s) 28, 140
BciT130I CCWGG 4 cut(s) 49, 150, 389, 500
BcoDI GTCTC 1 cut(s) 515
BcuI ACTAGT 1 cut(s) 352
BfaI CTAG 1 cut(s) 353
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 2 cut(s) 43, 494
BlsI GCNGC 2 cut(s) 44, 495
Bme1390I CCNGG 4 cut(s) 49, 150, 389, 500
BmiI GGNNCC 1 cut(s) 398
BmrFI CCNGG 4 cut(s) 49, 150, 389, 500
BmsI GCATC 1 cut(s) 488
BpiI GAAGAC 2 cut(s) 477, 536
BpmI CTGGAG 2 cut(s) 31, 132
Bpu10I CCTNAGC 2 cut(s) 123, 345
BpuEI CTTGAG 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 400
BsaWI WCCGGW 1 cut(s) 77
BsaXI ACNNNNNCTCC 6 cut(s) 29, 59, 388, 418, 467, 497
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse118I RCCGGY 1 cut(s) 511
BseBI CCWGG 4 cut(s) 49, 150, 389, 500
BseDI CCNNGG 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 3 cut(s) 114, 204, 309
BseRI GAGGAG 3 cut(s) 22, 409, 449
BseXI GCAGC 2 cut(s) 54, 480
BshFI GGCC 1 cut(s) 131
BsiSI CCGG 2 cut(s) 78, 512
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 515
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 238
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 3 cut(s) 115, 203, 310
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 398
BspMI ACCTGC 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 511
BssAI RCCGGY 1 cut(s) 511
BssECI CCNNGG 1 cut(s) 400
BssMI GATC 1 cut(s) 238
BssSI CACGAG 1 cut(s) 443
Bst2BI CACGAG 1 cut(s) 443
Bst2UI CCWGG 4 cut(s) 49, 150, 389, 500
Bst4CI ACNGT 2 cut(s) 404, 535
Bst6I CTCTTC 1 cut(s) 216
BstC8I GCNNGC 3 cut(s) 158, 291, 513
BstDEI CTNAG 5 cut(s) 123, 190, 318, 345, 525
BstDSI CCRYGG 1 cut(s) 400
BstEII GGTNACC 1 cut(s) 173
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 4 cut(s) 49, 150, 389, 500
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 4 cut(s) 47, 148, 387, 498
BstV1I GCAGC 2 cut(s) 54, 480
BstV2I GAAGAC 2 cut(s) 477, 536
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 231
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 3 cut(s) 158, 291, 513
CciI TCATGA 1 cut(s) 97
CfoI GCGC 1 cut(s) 72
Cfr10I RCCGGY 1 cut(s) 511
CviAII CATG 2 cut(s) 98, 472
DdeI CTNAG 5 cut(s) 123, 190, 318, 345, 525
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco91I GGTNACC 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 173
EcoRII CCWGG 4 cut(s) 47, 148, 387, 498
FaeI CATG 2 cut(s) 101, 475
FaiI YATR 2 cut(s) 99, 473
FatI CATG 2 cut(s) 97, 471
Fnu4HI GCNGC 2 cut(s) 43, 494
Fsp4HI GCNGC 2 cut(s) 43, 494
FspBI CTAG 1 cut(s) 353
GlaI GCGC 1 cut(s) 71
GluI GCNGC 2 cut(s) 43, 494
GsuI CTGGAG 2 cut(s) 31, 132
HaeIII GGCC 1 cut(s) 131
HapII CCGG 2 cut(s) 78, 512
HhaI GCGC 1 cut(s) 72
Hin1II CATG 2 cut(s) 101, 475
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 1 cut(s) 188
HpaII CCGG 2 cut(s) 78, 512
HphI GGTGA 4 cut(s) 43, 344, 349, 416
Hpy166II GTNNAC 1 cut(s) 187
Hpy188III TCNNGA 3 cut(s) 98, 215, 258
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 255
HpyAV CCTTC 3 cut(s) 22, 172, 448
HpyCH4III ACNGT 2 cut(s) 404, 535
HpyCH4V TGCA 1 cut(s) 442
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 5 cut(s) 123, 190, 318, 345, 525
Hsp92II CATG 2 cut(s) 101, 475
HspAI GCGC 1 cut(s) 70
KroI GCCGGC 1 cut(s) 511
KroNI GCCGGC 1 cut(s) 513
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 3 cut(s) 50, 396, 501
Lsp1109I GCAGC 2 cut(s) 54, 480
LweI GCATC 1 cut(s) 488
MaeI CTAG 1 cut(s) 353
MaeIII GTNAC 3 cut(s) 55, 173, 467
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 6 cut(s) 37, 233, 316, 334, 477, 541
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 2 cut(s) 15, 307
MluNI TGGCCA 1 cut(s) 131
MlyI GAGTC 1 cut(s) 182
Mox20I TGGCCA 1 cut(s) 131
MroNI GCCGGC 1 cut(s) 511
MscI TGGCCA 1 cut(s) 131
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 447
Msp20I TGGCCA 1 cut(s) 131
MspI CCGG 2 cut(s) 78, 512
MspR9I CCNGG 4 cut(s) 49, 150, 389, 500
MvaI CCWGG 4 cut(s) 49, 150, 389, 500
MwoI GCNNNNNNNGC 1 cut(s) 128
NaeI GCCGGC 1 cut(s) 513
NdeII GATC 1 cut(s) 238
NgoMIV GCCGGC 1 cut(s) 511
NlaIII CATG 2 cut(s) 101, 475
NlaIV GGNNCC 1 cut(s) 398
NmuCI GTSAC 1 cut(s) 467
OliI CACNNNNGTG 1 cut(s) 447
PagI TCATGA 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PdiI GCCGGC 1 cut(s) 513
PfoI TCCNGGA 2 cut(s) 148, 387
PkrI GCNGC 2 cut(s) 44, 495
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
Psp6I CCWGG 4 cut(s) 47, 148, 387, 498
PspEI GGTNACC 1 cut(s) 173
PspGI CCWGG 4 cut(s) 47, 148, 387, 498
PspN4I GGNNCC 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 447
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 2 cut(s) 43, 494
Sau3AI GATC 1 cut(s) 238
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 4 cut(s) 49, 150, 389, 500
SetI ASST 9 cut(s) 33, 47, 57, 97, 129, 206, 291, 339, 411
SfaNI GCATC 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
SpeI ACTAGT 1 cut(s) 352
Sse9I AATT 2 cut(s) 15, 307
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 4 cut(s) 47, 148, 387, 498
TaaI ACNGT 2 cut(s) 404, 535
TasI AATT 2 cut(s) 15, 307
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 2 cut(s) 42, 493
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 1 cut(s) 38
TspRI CASTG 1 cut(s) 238
XapI RAATTY 1 cut(s) 307
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.