Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004687

Physical Location & Seq

Genomic Coordinates Forward (+)

14573030 .. 14573952

Gene Structure 923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGATCATCATCATCAAAAACTGCGACAAGCCTTTACTCAATTTCAAAGAGATGGAGATGCAAACAAAATGCGACTTGGAACTTCGCCTTCTTACTTCTTCTTATGATTCTGATTTCCATAGCTCGTTGGACGAATCAAGCAGCTCTGAAATTTCACAACCAAAGCAAGAATCTCAGATATTAACCATTTTCTACAACGGGCACATGTGTGTTTCTTCAGATCTTACCCATCTTGAGGCTAACGCTATACTATCGCTAGCGAGTAGAGATGTGGAAGAGAAATCTTTATCCTTGAGAAGTTCAGACGGTTCGGATCCTCCAACAATCCCAAACAATTCGACTCGATTTCATTATCAAAAGGCCTCTATGAAGAGATCTCTTCACAGTTTTCTTCAGAAACGAAGTCTTCGGATTCAAGCAACTTCCCCTTACCACCGTTACCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

148

Amino Acids

16.97

Weight (kDa)

7.01

Isoelectric Point (pI)

64.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	56 - 88	1.5e-12	tify domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30135 AT2G34600
fragaria_vesca	FvH4_3g05360 FvH4_3g05370
malus_domestica	MD05G1282000.v1.1 MD05G1282100.v1.1 MD10G1260700.v1.1
prunus_persica	Prupe.4G082500_v2.0.a1
pyrus_communis	pycom10g21670 pycom10g21680
rosa_chinensis	RchiOBHm_Chr5g0014381 RchiOBHm_Chr5g0014391
rosa_laevigata	RLG00000032103 RLG00000032104
rosa_multiflora	Rmu_co8215942.1_g000001 Rmu_co8389687.1_g000001 Rmu_sc0039946.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062200 Rroxscaffold_1G00062210
rosa_rugosa	Rorug05G0017600 Rorug05G0017700
rosa_samantha	Rh5AG112400 Rh5AG112500 Rh5BG109100 Rh5BG109200 Rh5CG120900 Rh5CG121000 Rh5DG108100 Rh5DG108200
rosa_wichuraiana	Rw5G009750 Rw5G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	308, 321
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	2 cut(s)	201, 377
AfiI	CCNNNNNNNGG	1 cut(s)	235
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	2 cut(s)	46, 416
AleI	CACNNNNGTG	1 cut(s)	207
AluBI	AGCT	2 cut(s)	123, 144
AluI	AGCT	2 cut(s)	123, 144
AlwI	GGATC	2 cut(s)	308, 321
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	150
AsuNHI	GCTAGC	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	2 cut(s)	46, 237
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	257
BglII	AGATCT	2 cut(s)	220, 374
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	1 cut(s)	48
BmtI	GCTAGC	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	398
BpuEI	CTTGAG	2 cut(s)	254, 313
BsaBI	GATNNNNATC	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse8I	GATNNNNATC	1 cut(s)	8
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	153
BshFI	GGCC	1 cut(s)	362
BslI	CCNNNNNNNGG	1 cut(s)	235
BsnI	GGCC	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	4 cut(s)	3, 220, 313, 374
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	315
BspOI	GCTAGC	1 cut(s)	260
BspPI	GGATC	2 cut(s)	308, 321
BssMI	GATC	4 cut(s)	3, 220, 313, 374
Bst4CI	ACNGT	3 cut(s)	308, 386, 437
Bst6I	CTCTTC	3 cut(s)	270, 365, 384
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	174
BstKTI	GATC	4 cut(s)	6, 223, 316, 377
BstMBI	GATC	4 cut(s)	3, 220, 313, 374
BstNSI	RCATGY	1 cut(s)	208
BstSLI	GKGCMC	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	153
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	3 cut(s)	220, 313, 374
BstYI	RGATCY	3 cut(s)	220, 313, 374
BsuRI	GGCC	1 cut(s)	362
Cac8I	GCNNGC	1 cut(s)	258
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	5 cut(s)	31, 123, 144, 239, 362
CviKI_1	RGCY	5 cut(s)	31, 123, 144, 239, 362
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	4 cut(s)	5, 222, 315, 376
DpnII	GATC	4 cut(s)	3, 220, 313, 374
Eam1104I	CTCTTC	3 cut(s)	270, 365, 384
EarI	CTCTTC	3 cut(s)	270, 365, 384
Eco147I	AGGCCT	1 cut(s)	362
Eco57I	CTGAAG	2 cut(s)	201, 377
FaeI	CATG	1 cut(s)	208
FaiI	YATR	5 cut(s)	105, 120, 206, 248, 368
FatI	CATG	1 cut(s)	204
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	1 cut(s)	142
HaeIII	GGCC	1 cut(s)	362
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	5 cut(s)	107, 134, 170, 340, 412
Hpy188I	TCNGA	8 cut(s)	112, 148, 177, 220, 304, 313, 396, 411
Hpy188III	TCNNGA	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	3 cut(s)	308, 386, 437
HpyCH4V	TGCA	1 cut(s)	61
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 220, 313, 374
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	1 cut(s)	257
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	4 cut(s)	5, 222, 315, 376
MboI	GATC	4 cut(s)	3, 220, 313, 374
MboII	GAAGA	7 cut(s)	90, 207, 287, 371, 382, 383, 398
MflI	RGATCY	3 cut(s)	220, 313, 374
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	3 cut(s)	40, 150, 334
MlyI	GAGTC	1 cut(s)	334
MmeI	TCCRAC	2 cut(s)	108, 344
MnlI	CCTC	3 cut(s)	229, 327, 373
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	207
NdeII	GATC	4 cut(s)	3, 220, 313, 374
NheI	GCTAGC	1 cut(s)	256
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	1 cut(s)	315
NspI	RCATGY	1 cut(s)	208
OliI	CACNNNNGTG	1 cut(s)	207
PceI	AGGCCT	1 cut(s)	362
PciI	ACATGT	1 cut(s)	204
PfeI	GAWTC	4 cut(s)	107, 134, 170, 412
PkrI	GCNGC	1 cut(s)	143
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PscI	ACATGT	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	315
PsuI	RGATCY	3 cut(s)	220, 313, 374
RseI	CAYNNNNRTG	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	4 cut(s)	3, 220, 313, 374
SchI	GAGTC	1 cut(s)	334
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	2 cut(s)	125, 146
SfaNI	GCATC	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	2 cut(s)	233, 292
SmoI	CTYRAG	2 cut(s)	233, 292
Sse9I	AATT	3 cut(s)	40, 150, 334
SseBI	AGGCCT	1 cut(s)	362
SspMI	CTAG	1 cut(s)	257
StuI	AGGCCT	1 cut(s)	362
TaaI	ACNGT	3 cut(s)	308, 386, 437
TaqI	TCGA	2 cut(s)	338, 343
TasI	AATT	3 cut(s)	40, 150, 334
TfiI	GAWTC	4 cut(s)	107, 134, 170, 412
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseI	GCWGC	1 cut(s)	141
TspDTI	ATGAA	2 cut(s)	338, 383
XapI	RAATTY	1 cut(s)	150
XceI	RCATGY	1 cut(s)	208
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.