Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004687

Physical Location & Seq

Genomic Coordinates Reverse (-)

3120227 .. 3121728

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAGGAGGAACTGCAATTTGGAGCTCCGCCTTAATACTTCCAGTGCTAATTCCGGCTTCCCTCTTCGCAACCACCGCGACCGCCCCGCCGTTCTGGAATCGAGTTCTGGAACACCGCAGCAGCAGCCATTGACGATCTTCTACGACGGAGTGATGTGTGTTTCTGATGTTACAGAGCTTCAGGCTAGAGCGATTCTTTTTCTTGCAAACAAAGAAATGGAGGAAAGGTTGAAGACCAGTCCAAGTCCGAGTCCTTGTGCGTCGACTTCTGAACCATCTTCACCGAGCCTGCACTCCCCAATATGCAGCCCTTCCATGAAGAAGTCACTACAGACGTTTTTGCAGAAGAGGAAGTATCGGATTCAAGCAACATCTCATCCCTACAATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

131

Amino Acids

14.56

Weight (kDa)

9.46

Isoelectric Point (pI)

83.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	39 - 70	2.3e-12	tify domain
Jas_motif	PF09425	107 - 128	9.9e-06	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30135 AT2G34600
fragaria_vesca	FvH4_3g05360 FvH4_3g05370
malus_domestica	MD05G1282000.v1.1 MD05G1282100.v1.1 MD10G1260700.v1.1
prunus_persica	Prupe.4G082500_v2.0.a1
pyrus_communis	pycom10g21670 pycom10g21680
rosa_chinensis	RchiOBHm_Chr5g0014381 RchiOBHm_Chr5g0014391
rosa_laevigata	RLG00000032103 RLG00000032104
rosa_multiflora	Rmu_co8215942.1_g000001 Rmu_co8389687.1_g000001 Rmu_sc0039946.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062200 Rroxscaffold_1G00062210
rosa_rugosa	Rorug05G0017600 Rorug05G0017700
rosa_samantha	Rh5AG112400 Rh5AG112500 Rh5BG109100 Rh5BG109200 Rh5CG120900 Rh5CG121000 Rh5DG108100 Rh5DG108200
rosa_wichuraiana	Rw5G009750 Rw5G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	263
AccII	CGCG	1 cut(s)	78
AciI	CCGC	5 cut(s)	28, 76, 82, 87, 116
AcuI	CTGAAG	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	232, 365
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	25, 178
AluI	AGCT	2 cut(s)	25, 178
Alw21I	GWGCWC	1 cut(s)	27
ApeKI	GCWGC	4 cut(s)	118, 121, 124, 306
AsuHPI	GGTGA	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	4 cut(s)	130, 133, 136, 318
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	1 cut(s)	74
BfaI	CTAG	2 cut(s)	186, 391
BfmI	CTRYAG	1 cut(s)	329
BisI	GCNGC	4 cut(s)	119, 122, 125, 307
BlsI	GCNGC	4 cut(s)	120, 123, 126, 308
BpiI	GAAGAC	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bse1I	ACTGG	2 cut(s)	42, 237
BseGI	GGATG	1 cut(s)	376
BseNI	ACTGG	2 cut(s)	42, 237
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	4 cut(s)	130, 133, 136, 318
BsgI	GTGCAG	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	82
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	135
BspACI	CCGC	5 cut(s)	28, 76, 82, 87, 116
BspFNI	CGCG	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	42, 237
BssMI	GATC	1 cut(s)	135
Bst6I	CTCTTC	2 cut(s)	69, 341
BstC8I	GCNNGC	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	135
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 124
BstSFI	CTRYAG	1 cut(s)	329
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	4 cut(s)	130, 133, 136, 318
BstV2I	GAAGAC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	290
CseI	GACGC	1 cut(s)	249
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	7 cut(s)	25, 57, 127, 178, 185, 288, 309
CviKI_1	RGCY	7 cut(s)	25, 57, 127, 178, 185, 288, 309
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
Eam1104I	CTCTTC	2 cut(s)	69, 341
EarI	CTCTTC	2 cut(s)	69, 341
EciI	GGCGGA	1 cut(s)	17
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	1 cut(s)	319
FaiI	YATR	2 cut(s)	304, 317
FatI	CATG	1 cut(s)	315
FauI	CCCGC	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	263
Fnu4HI	GCNGC	4 cut(s)	119, 122, 125, 307
FokI	GGATG	1 cut(s)	363
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	4 cut(s)	119, 122, 125, 307
FspBI	CTAG	2 cut(s)	186, 391
GluI	GCNGC	4 cut(s)	119, 122, 125, 307
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	264
HindII	GTYRAC	1 cut(s)	264
HinfI	GANTC	4 cut(s)	98, 193, 250, 361
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	273
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	4 cut(s)	166, 249, 271, 360
Hpy188III	TCNNGA	2 cut(s)	95, 108
Hpy8I	GTNNAC	1 cut(s)	264
Hpy99I	CGWCG	2 cut(s)	149, 265
HpyAV	CCTTC	1 cut(s)	321
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	5 cut(s)	15, 206, 292, 306, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 124
HpySE526I	ACGT	1 cut(s)	335
Hsp92II	CATG	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	2 cut(s)	22, 30
LpnPI	CCDG	7 cut(s)	55, 67, 80, 93, 167, 250, 302
Lsp1109I	GCAGC	4 cut(s)	130, 133, 136, 318
MaeI	CTAG	2 cut(s)	186, 391
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	2 cut(s)	169, 324
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	6 cut(s)	56, 130, 244, 270, 331, 358
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	2 cut(s)	16, 49
MlyI	GAGTC	1 cut(s)	259
MnlI	CCTC	3 cut(s)	72, 214, 342
MseI	TTAA	1 cut(s)	33
MspI	CCGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	75, 124
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	324
PfeI	GAWTC	3 cut(s)	98, 193, 361
PkrI	GCNGC	4 cut(s)	120, 123, 126, 308
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
Psp124BI	GAGCTC	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	27
SalI	GTCGAC	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	4 cut(s)	119, 122, 125, 307
Sau3AI	GATC	1 cut(s)	135
SchI	GAGTC	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	4 cut(s)	27, 180, 230, 338
SfcI	CTRYAG	1 cut(s)	329
Sse9I	AATT	2 cut(s)	16, 49
SsiI	CCGC	5 cut(s)	28, 76, 82, 87, 116
SspMI	CTAG	2 cut(s)	186, 391
SstI	GAGCTC	1 cut(s)	27
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	2 cut(s)	101, 263
TasI	AATT	2 cut(s)	16, 49
TfiI	GAWTC	3 cut(s)	98, 193, 361
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	4 cut(s)	118, 121, 124, 306
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	1 cut(s)	332
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	263
XspI	CTAG	2 cut(s)	186, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.