Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004687

Physical Location & Seq

Genomic Coordinates Reverse (-)

41577583 .. 41578856

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1282100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAGGAGGAACTGCAATTTGGAGCTTCAGTTATATTCTCCAGGTTCTAATGAAACCCAGCAACAAGAACACCAGCAGCAGCAGCTGACCATATTTTACAACGGAATGATGTGCGTTCGAGATGTTACAGAGCTTCAGGCCAGATCCATCCTTTTTCTTGCGAACAAAGGAATGGAAGAAAGGGTAAAGAGTCCATTTACTCCTCCAAGTGGATTATCAGAACCACCTTCACCAAATGTGGTGTCTCCGCTGTGTAGCACCGTTGCTGGTGTGTCTATGAAGAGATCACTCCAAAGGTTTTTGCAGAAGAGAAAGCATCGGACTCAAGCAACATCTCCATACCATCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

117

Amino Acids

13.28

Weight (kDa)

9.85

Isoelectric Point (pI)

86.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	25 - 55	4e-12	tify domain
Jas_motif	PF09425	94 - 114	1.6e-09	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30135 AT2G34600
fragaria_vesca	FvH4_3g05360 FvH4_3g05370
malus_domestica	MD05G1282000.v1.1 MD05G1282100.v1.1 MD10G1260700.v1.1
prunus_persica	Prupe.4G082500_v2.0.a1
pyrus_communis	pycom10g21670 pycom10g21680
rosa_chinensis	RchiOBHm_Chr5g0014381 RchiOBHm_Chr5g0014391
rosa_laevigata	RLG00000032103 RLG00000032104
rosa_multiflora	Rmu_co8215942.1_g000001 Rmu_co8389687.1_g000001 Rmu_sc0039946.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062200 Rroxscaffold_1G00062210
rosa_rugosa	Rorug05G0017600 Rorug05G0017700
rosa_samantha	Rh5AG112400 Rh5AG112500 Rh5BG109100 Rh5BG109200 Rh5CG120900 Rh5CG121000 Rh5DG108100 Rh5DG108200
rosa_wichuraiana	Rw5G009750 Rw5G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	1 cut(s)	138
AcuI	CTGAAG	2 cut(s)	11, 119
AfiI	CCNNNNNNNGG	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	40
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	3 cut(s)	25, 85, 133
AluI	AGCT	3 cut(s)	25, 85, 133
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	138
AlwNI	CAGNNNCTG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	3 cut(s)	76, 79, 82
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AsuHPI	GGTGA	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	88, 91, 94
BccI	CCATC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	349
BisI	GCNGC	3 cut(s)	77, 80, 83
BlsI	GCNGC	3 cut(s)	78, 81, 84
Bme1390I	CCNGG	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	309
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseRI	GAGGAG	2 cut(s)	19, 192
BseXI	GCAGC	3 cut(s)	88, 91, 94
BseYI	CCCAGC	1 cut(s)	57
BshFI	GGCC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	143, 284
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	138
BssMI	GATC	2 cut(s)	143, 284
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	2 cut(s)	275, 302
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	2 cut(s)	146, 287
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	2 cut(s)	143, 284
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstV1I	GCAGC	3 cut(s)	88, 91, 94
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	140
BtgZI	GCGATG	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	147
CaiI	CAGNNNCTG	1 cut(s)	85
CviJI	RGCY	4 cut(s)	25, 85, 133, 140
CviKI_1	RGCY	4 cut(s)	25, 85, 133, 140
DpnI	GATC	2 cut(s)	145, 286
DpnII	GATC	2 cut(s)	143, 284
Eam1104I	CTCTTC	2 cut(s)	275, 302
EarI	CTCTTC	2 cut(s)	275, 302
Eco57I	CTGAAG	2 cut(s)	11, 119
EcoRII	CCWGG	1 cut(s)	40
FaiI	YATR	4 cut(s)	34, 92, 278, 340
Fnu4HI	GCNGC	3 cut(s)	77, 80, 83
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	3 cut(s)	77, 80, 83
FspBI	CTAG	1 cut(s)	349
GluI	GCNGC	3 cut(s)	77, 80, 83
GsaI	CCCAGC	1 cut(s)	61
GsuI	CTGGAG	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	140
HinfI	GANTC	2 cut(s)	190, 322
HphI	GGTGA	1 cut(s)	222
Hpy188I	TCNGA	2 cut(s)	220, 321
Hpy188III	TCNNGA	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	237
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	2 cut(s)	15, 304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	143, 284
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	7 cut(s)	27, 54, 71, 86, 122, 154, 252
Lsp1109I	GCAGC	3 cut(s)	88, 91, 94
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	145, 286
MboI	GATC	2 cut(s)	143, 284
MboII	GAAGA	3 cut(s)	188, 292, 319
MflI	RGATCY	1 cut(s)	143
MluCI	AATT	1 cut(s)	16
MlyI	GAGTC	2 cut(s)	199, 316
MnlI	CCTC	1 cut(s)	213
MspA1I	CMGCKG	2 cut(s)	85, 250
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	2 cut(s)	143, 284
PkrI	GCNGC	3 cut(s)	78, 81, 84
PleI	GAGTC	2 cut(s)	198, 316
PpsI	GAGTC	2 cut(s)	198, 316
Psp6I	CCWGG	1 cut(s)	40
PspFI	CCCAGC	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	85
SatI	GCNGC	3 cut(s)	77, 80, 83
Sau3AI	GATC	2 cut(s)	143, 284
SchI	GAGTC	2 cut(s)	199, 316
ScrFI	CCNGG	1 cut(s)	42
SetI	ASST	6 cut(s)	27, 46, 87, 135, 229, 299
SfaNI	GCATC	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	1 cut(s)	16
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	1 cut(s)	349
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	118
TasI	AATT	1 cut(s)	16
TseI	GCWGC	3 cut(s)	76, 79, 82
TspDTI	ATGAA	2 cut(s)	66, 293
TspGWI	ACGGA	1 cut(s)	117
XspI	CTAG	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.