Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004687

Physical Location & Seq

Genomic Coordinates Forward (+)

4029201 .. 4030403

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G082500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGGAGAAACTGCAACCTGGAGCTTCAGCTTCTTCATCCTTCTTATGAAACCCATAAAAAACAACAAGAGCAAGAACAACACGAAGAACAGCTGCAGAAGCAGCAGCAGATGATGACTATTTTTTATAATGGAGCGATGTGCGCTCGTGATGTTACAGAGCTTCAGGCTAGAAGCATCCTTTTTCTTGCAAACAGAGAAATGGAGGAAAGGGTAAAGAGTCCATTCACTCCAAGTGGATCAGAACTATCTTCACCAACTGTGATGTCTCCACTGTGTAGCCCTGTTGCTGGCATGTCTATGAAGAGATCACTCCAGAGGTTTTTGCAGAAGAGGAAGCATAGGGTTCAAGCAACATCTCCATACCATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

125

Amino Acids

14.53

Weight (kDa)

9.37

Isoelectric Point (pI)

100.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30135 AT2G34600
fragaria_vesca	FvH4_3g05360 FvH4_3g05370
malus_domestica	MD05G1282000.v1.1 MD05G1282100.v1.1 MD10G1260700.v1.1
prunus_persica	Prupe.4G082500_v2.0.a1
pyrus_communis	pycom10g21670 pycom10g21680
rosa_chinensis	RchiOBHm_Chr5g0014381 RchiOBHm_Chr5g0014391
rosa_laevigata	RLG00000032103 RLG00000032104
rosa_multiflora	Rmu_co8215942.1_g000001 Rmu_co8389687.1_g000001 Rmu_sc0039946.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062200 Rroxscaffold_1G00062210
rosa_rugosa	Rorug05G0017600 Rorug05G0017700
rosa_samantha	Rh5AG112400 Rh5AG112500 Rh5BG109100 Rh5BG109200 Rh5CG120900 Rh5CG121000 Rh5DG108100 Rh5DG108200
rosa_wichuraiana	Rw5G009750 Rw5G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	129
AclWI	GGATC	1 cut(s)	247
AcuI	CTGAAG	2 cut(s)	11, 149
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	4 cut(s)	25, 31, 94, 163
AluI	AGCT	4 cut(s)	25, 31, 94, 163
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	247
ApeKI	GCWGC	3 cut(s)	94, 103, 106
AspLEI	GCGC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	246
BauI	CACGAG	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	81, 115, 118
BciT130I	CCWGG	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	2 cut(s)	171, 373
BfmI	CTRYAG	1 cut(s)	95
BisI	GCNGC	3 cut(s)	95, 104, 107
BlsI	GCNGC	3 cut(s)	96, 105, 108
Bme1390I	CCNGG	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	186
BpmI	CTGGAG	2 cut(s)	41, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	20
BseGI	GGATG	2 cut(s)	37, 177
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	3 cut(s)	81, 115, 118
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	239, 308
BspMAI	CTGCAG	1 cut(s)	99
BspPI	GGATC	1 cut(s)	247
BssMI	GATC	2 cut(s)	239, 308
BssSI	CACGAG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	262, 276
Bst6I	CTCTTC	2 cut(s)	299, 326
BstC8I	GCNNGC	1 cut(s)	292
BstF5I	GGATG	2 cut(s)	37, 177
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	242, 311
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	2 cut(s)	239, 308
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 103, 143
BstNI	CCWGG	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	81, 115, 118
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	37, 177
BtsIMutI	CAGTG	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	292
CfoI	GCGC	1 cut(s)	146
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	6 cut(s)	25, 31, 94, 163, 170, 282
CviKI_1	RGCY	6 cut(s)	25, 31, 94, 163, 170, 282
DpnI	GATC	2 cut(s)	241, 310
DpnII	GATC	2 cut(s)	239, 308
Eam1104I	CTCTTC	2 cut(s)	299, 326
EarI	CTCTTC	2 cut(s)	299, 326
Eco57I	CTGAAG	2 cut(s)	11, 149
EcoRII	CCWGG	1 cut(s)	18
FaeI	CATG	1 cut(s)	298
FaiI	YATR	7 cut(s)	48, 57, 129, 296, 302, 342, 364
FatI	CATG	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	95, 104, 107
FokI	GGATG	2 cut(s)	24, 164
Fsp4HI	GCNGC	3 cut(s)	95, 104, 107
FspBI	CTAG	2 cut(s)	171, 373
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	3 cut(s)	95, 104, 107
GsuI	CTGGAG	2 cut(s)	41, 299
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	1 cut(s)	220
HphI	GGTGA	1 cut(s)	246
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	2 cut(s)	149, 316
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	262, 276
HpyCH4V	TGCA	4 cut(s)	15, 97, 191, 328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 103, 143
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	239, 308
LmnI	GCTCC	2 cut(s)	22, 134
LpnPI	CCDG	6 cut(s)	5, 32, 152, 276, 297, 329
Lsp1109I	GCAGC	3 cut(s)	81, 115, 118
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	2 cut(s)	171, 373
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	2 cut(s)	241, 310
MboI	GATC	2 cut(s)	239, 308
MboII	GAAGA	5 cut(s)	26, 98, 243, 316, 343
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	3 cut(s)	199, 312, 327
MslI	CAYNNNNRTG	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	100, 103, 143
NdeII	GATC	2 cut(s)	239, 308
NlaIII	CATG	1 cut(s)	298
NspI	RCATGY	1 cut(s)	298
PkrI	GCNGC	3 cut(s)	96, 105, 108
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PsiI	TTATAA	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PstI	CTGCAG	1 cut(s)	99
PvuII	CAGCTG	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	299
SatI	GCNGC	3 cut(s)	95, 104, 107
Sau3AI	GATC	2 cut(s)	239, 308
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	20
SetI	ASST	6 cut(s)	21, 27, 33, 96, 165, 323
SfaNI	GCATC	1 cut(s)	186
SfcI	CTRYAG	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	299
SspMI	CTAG	2 cut(s)	171, 373
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	262, 276
TscAI	CASTG	1 cut(s)	279
TseI	GCWGC	3 cut(s)	94, 103, 106
TspDTI	ATGAA	3 cut(s)	26, 63, 317
TspRI	CASTG	1 cut(s)	279
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	2 cut(s)	171, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.