Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004687

Physical Location & Seq

Genomic Coordinates Forward (+)

10355929 .. 10357537

Gene Structure 1609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG112400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAGGAGGAATTGCAATTTGGAGCTCTGCCTTAATACTTCCGGTGCTAATTCGGGCTTCCCTCTTCGCAACCACCACGACCGCCGTGCCGTGCTGGAATCGAGTTCTGGAACCCCACGGCAACAGCAGCAGCCGTTGACCATCTTCTACGATGGAATGATGTGTGTTTCTGATGTTACAGAGCTTAAGGCTAGATCAATTCTCTTTCTTGCAAACAAAGAAATGGAGGAAAGGTTGAAGACTAGTCCAAGTCCAAGTCCATGTACGTCGACTTCTGAACCATCTTCGCCGAGCCTCCAGTCCCCAATATGCAGCCCCTCCATGAAGAAGTCGCTACAAACGTTTTTGCAGAAGAGGAAGTACCGGATTCAAGCAACATCTCATCCTTACAATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

132

Amino Acids

14.87

Weight (kDa)

9.46

Isoelectric Point (pI)

90.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	41 - 72	9.9e-13	tify domain
Jas_motif	PF09425	109 - 130	1e-05	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30135 AT2G34600
fragaria_vesca	FvH4_3g05360 FvH4_3g05370
malus_domestica	MD05G1282000.v1.1 MD05G1282100.v1.1 MD10G1260700.v1.1
prunus_persica	Prupe.4G082500_v2.0.a1
pyrus_communis	pycom10g21670 pycom10g21680
rosa_chinensis	RchiOBHm_Chr5g0014381 RchiOBHm_Chr5g0014391
rosa_laevigata	RLG00000032103 RLG00000032104
rosa_multiflora	Rmu_co8215942.1_g000001 Rmu_co8389687.1_g000001 Rmu_sc0039946.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062200 Rroxscaffold_1G00062210
rosa_rugosa	Rorug05G0017600 Rorug05G0017700
rosa_samantha	Rh5AG112400 Rh5AG112500 Rh5BG109100 Rh5BG109200 Rh5CG120900 Rh5CG121000 Rh5DG108100 Rh5DG108200
rosa_wichuraiana	Rw5G009750 Rw5G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	269
AciI	CCGC	1 cut(s)	82
AclI	AACGTT	1 cut(s)	341
AfaI	GTAC	2 cut(s)	265, 362
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	238, 371
AhlI	ACTAGT	1 cut(s)	242
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	25, 184
AluI	AGCT	2 cut(s)	25, 184
Alw21I	GWGCWC	1 cut(s)	27
ApeKI	GCWGC	3 cut(s)	127, 130, 312
BanII	GRGCYC	1 cut(s)	27
BarI	GAAGNNNNNNTAC	4 cut(s)	256, 288, 344, 376
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	3 cut(s)	139, 142, 324
BccI	CCATC	3 cut(s)	146, 149, 289
BceAI	ACGGC	4 cut(s)	69, 74, 118, 134
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BcuI	ACTAGT	1 cut(s)	242
BfaI	CTAG	3 cut(s)	192, 243, 397
BfrI	CTTAAG	1 cut(s)	185
BisI	GCNGC	3 cut(s)	128, 131, 313
BlsI	GCNGC	3 cut(s)	129, 132, 314
BmiI	GGNNCC	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	245
BpmI	CTGGAG	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	116
BsaWI	WCCGGW	2 cut(s)	41, 363
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bse1I	ACTGG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	382
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	3 cut(s)	139, 142, 324
Bsh1285I	CGRYCG	1 cut(s)	82
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	42, 364
BslFI	GGGAC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	194
BspACI	CCGC	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	112
BspTI	CTTAAG	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	1 cut(s)	194
Bst6I	CTCTTC	2 cut(s)	69, 347
BstAFI	CTTAAG	1 cut(s)	185
BstDSI	CCRYGG	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	382
BstKTI	GATC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	194
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	139, 142, 324
BstV2I	GAAGAC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	382
Csp6I	GTAC	2 cut(s)	264, 361
CviAII	CATG	2 cut(s)	261, 322
CviJI	RGCY	7 cut(s)	25, 57, 133, 184, 191, 294, 315
CviKI_1	RGCY	7 cut(s)	25, 57, 133, 184, 191, 294, 315
CviQI	GTAC	2 cut(s)	264, 361
DpnI	GATC	1 cut(s)	196
DpnII	GATC	1 cut(s)	194
Eam1104I	CTCTTC	2 cut(s)	69, 347
EarI	CTCTTC	2 cut(s)	69, 347
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	2 cut(s)	264, 325
FaiI	YATR	3 cut(s)	262, 310, 323
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	2 cut(s)	260, 321
FblI	GTMKAC	1 cut(s)	269
Fnu4HI	GCNGC	3 cut(s)	128, 131, 313
FokI	GGATG	1 cut(s)	369
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	3 cut(s)	128, 131, 313
FspBI	CTAG	3 cut(s)	192, 243, 397
GluI	GCNGC	3 cut(s)	128, 131, 313
GsuI	CTGGAG	1 cut(s)	281
HapII	CCGG	2 cut(s)	42, 364
Hin1II	CATG	2 cut(s)	264, 325
HincII	GTYRAC	2 cut(s)	138, 270
HindII	GTYRAC	2 cut(s)	138, 270
HinfI	GANTC	2 cut(s)	98, 367
HpaII	CCGG	2 cut(s)	42, 364
Hpy166II	GTNNAC	2 cut(s)	138, 270
Hpy188I	TCNGA	2 cut(s)	172, 277
Hpy188III	TCNNGA	1 cut(s)	108
Hpy8I	GTNNAC	2 cut(s)	138, 270
Hpy99I	CGWCG	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	266, 341
HpyCH4V	TGCA	4 cut(s)	15, 212, 312, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpySE526I	ACGT	2 cut(s)	266, 341
Hsp92II	CATG	2 cut(s)	264, 325
Kzo9I	GATC	1 cut(s)	194
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	5 cut(s)	55, 80, 93, 311, 377
Lsp1109I	GCAGC	3 cut(s)	139, 142, 324
MaeI	CTAG	3 cut(s)	192, 243, 397
MaeII	ACGT	2 cut(s)	266, 341
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	1 cut(s)	196
MboI	GATC	1 cut(s)	194
MboII	GAAGA	6 cut(s)	56, 136, 250, 276, 337, 364
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	10, 16, 49, 198
MnlI	CCTC	5 cut(s)	72, 220, 305, 328, 348
MseI	TTAA	2 cut(s)	33, 186
MspCI	CTTAAG	1 cut(s)	185
MspI	CCGG	2 cut(s)	42, 364
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	1 cut(s)	194
NlaIII	CATG	2 cut(s)	264, 325
NlaIV	GGNNCC	1 cut(s)	112
NmeAIII	GCCGAG	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	98, 367
PkrI	GCNGC	3 cut(s)	129, 132, 314
Psp124BI	GAGCTC	1 cut(s)	27
Psp1406I	AACGTT	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	112
RsaI	GTAC	2 cut(s)	265, 362
RsaNI	GTAC	2 cut(s)	264, 361
SacI	GAGCTC	1 cut(s)	27
SalI	GTCGAC	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	33, 186
SatI	GCNGC	3 cut(s)	128, 131, 313
Sau3AI	GATC	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	5 cut(s)	27, 186, 236, 269, 344
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SpeI	ACTAGT	1 cut(s)	242
Sse9I	AATT	4 cut(s)	10, 16, 49, 198
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	3 cut(s)	192, 243, 397
SstI	GAGCTC	1 cut(s)	27
TaiI	ACGT	2 cut(s)	269, 344
TaqI	TCGA	2 cut(s)	101, 269
TasI	AATT	4 cut(s)	10, 16, 49, 198
TfiI	GAWTC	2 cut(s)	98, 367
Tru1I	TTAA	2 cut(s)	33, 186
Tru9I	TTAA	2 cut(s)	33, 186
TseI	GCWGC	3 cut(s)	127, 130, 312
TspDTI	ATGAA	1 cut(s)	338
Vha464I	CTTAAG	1 cut(s)	185
XmiI	GTMKAC	1 cut(s)	269
XspI	CTAG	3 cut(s)	192, 243, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.