Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004687

Physical Location & Seq

Genomic Coordinates Reverse (-)

3116590 .. 3117378

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAGGAGAAGTTGCAACCTGGAACTGGAACTTCGACTTTCTTCTTCTGATGAATGTTCTAGCTCCCTTGAGTCCCTTCATCACCAATCATGTCAAGACCTGCAACAGCAGCAGCTAACCATTTTCTACAATGGAGTAATGTGCACTTGTGATGTCACTGAGCTTCAGGCTAGAGCCATTCTTTGTGTTGCAAACTATGAACTAGGGAAAATAGTGGTAAAGACTAGTACTACTTCAAGTTCGATTCCGAGTGGGTCGTACGAGTTATCTTCACCAAGCGCGCACTACTCTCCACCATGCACAAGCTGTGTTGCAGCAGGTGGTCTATCTATAAAGAAATCACTGCGAGAGTTTCTCCAAAAGAGAAAACATCGGAGCCAAGCAACACATCGATCCCTACCATTGAATTGCAAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

140

Amino Acids

15.34

Weight (kDa)

8.61

Isoelectric Point (pI)

84.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	35 - 64	1.2e-10	tify domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30135 AT2G34600
fragaria_vesca	FvH4_3g05360 FvH4_3g05370
malus_domestica	MD05G1282000.v1.1 MD05G1282100.v1.1 MD10G1260700.v1.1
prunus_persica	Prupe.4G082500_v2.0.a1
pyrus_communis	pycom10g21670 pycom10g21680
rosa_chinensis	RchiOBHm_Chr5g0014381 RchiOBHm_Chr5g0014391
rosa_laevigata	RLG00000032103 RLG00000032104
rosa_multiflora	Rmu_co8215942.1_g000001 Rmu_co8389687.1_g000001 Rmu_sc0039946.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062200 Rroxscaffold_1G00062210
rosa_rugosa	Rorug05G0017600 Rorug05G0017700
rosa_samantha	Rh5AG112400 Rh5AG112500 Rh5BG109100 Rh5BG109200 Rh5CG120900 Rh5CG121000 Rh5DG108100 Rh5DG108200
rosa_wichuraiana	Rw5G009750 Rw5G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	308
Acc36I	ACCTGC	2 cut(s)	108, 308
AccII	CGCG	1 cut(s)	281
AclWI	GGATC	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	2 cut(s)	229, 260
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	237, 406
AhlI	ACTAGT	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	4 cut(s)	63, 115, 163, 306
AluI	AGCT	4 cut(s)	63, 115, 163, 306
Alw21I	GWGCWC	1 cut(s)	146
Alw44I	GTGCAC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	387
ApaLI	GTGCAC	1 cut(s)	142
ApeKI	GCWGC	3 cut(s)	109, 112, 314
ApoI	RAATTY	1 cut(s)	414
AspLEI	GCGC	2 cut(s)	281, 283
AsuHPI	GGTGA	2 cut(s)	74, 264
BaeGI	GKGCMC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	121, 124, 326
BciT130I	CCWGG	1 cut(s)	20
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	4 cut(s)	60, 171, 203, 225
BfuAI	ACCTGC	2 cut(s)	108, 308
BisI	GCNGC	3 cut(s)	110, 113, 315
BlsI	GCNGC	3 cut(s)	111, 114, 316
BmcAI	AGTACT	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	377
BmrFI	CCNGG	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	339, 371
BpuEI	CTTGAG	1 cut(s)	89
Bsa29I	ATCGAT	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	20
BseCI	ATCGAT	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	30
BsePI	GCGCGC	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	3 cut(s)	121, 124, 326
Bsh1236I	CGCG	1 cut(s)	281
BshVI	ATCGAT	1 cut(s)	391
BsiHKAI	GWGCWC	1 cut(s)	146
BsiWI	CGTACG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	392
BspCNI	CTCAG	1 cut(s)	151
BspDI	ATCGAT	1 cut(s)	391
BspFNI	CGCG	1 cut(s)	281
BspLI	GGNNCC	1 cut(s)	377
BspMI	ACCTGC	2 cut(s)	108, 308
BspPI	GGATC	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	30
BssHII	GCGCGC	1 cut(s)	279
BssMI	GATC	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	281
BstHHI	GCGC	2 cut(s)	281, 283
BstKTI	GATC	1 cut(s)	395
BstMBI	GATC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	146
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	3 cut(s)	121, 124, 326
Bsu15I	ATCGAT	1 cut(s)	391
BsuTUI	ATCGAT	1 cut(s)	391
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	2 cut(s)	156, 341
BveI	ACCTGC	2 cut(s)	108, 308
Cac8I	GCNNGC	1 cut(s)	281
CfoI	GCGC	2 cut(s)	281, 283
ClaI	ATCGAT	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	228, 259
CviAII	CATG	2 cut(s)	90, 297
CviJI	RGCY	7 cut(s)	63, 115, 163, 170, 176, 306, 378
CviKI_1	RGCY	7 cut(s)	63, 115, 163, 170, 176, 306, 378
CviQI	GTAC	2 cut(s)	228, 259
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	18
FaeI	CATG	2 cut(s)	93, 300
FaiI	YATR	4 cut(s)	91, 198, 298, 332
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	89, 296
Fnu4HI	GCNGC	3 cut(s)	110, 113, 315
Fsp4HI	GCNGC	3 cut(s)	110, 113, 315
FspBI	CTAG	4 cut(s)	60, 171, 203, 225
GlaI	GCGC	2 cut(s)	280, 282
GluI	GCNGC	3 cut(s)	110, 113, 315
HhaI	GCGC	2 cut(s)	281, 283
Hin1II	CATG	2 cut(s)	93, 300
Hin6I	GCGC	2 cut(s)	279, 281
HinP1I	GCGC	2 cut(s)	279, 281
HinfI	GANTC	2 cut(s)	71, 244
HphI	GGTGA	2 cut(s)	74, 264
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	3 cut(s)	49, 249, 375
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	86
HpyCH4V	TGCA	7 cut(s)	15, 103, 144, 191, 300, 314, 411
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	93, 300
HspAI	GCGC	2 cut(s)	279, 281
Kzo9I	GATC	1 cut(s)	392
LmnI	GCTCC	2 cut(s)	68, 375
LpnPI	CCDG	6 cut(s)	5, 11, 32, 113, 152, 303
Lsp1109I	GCAGC	3 cut(s)	121, 124, 326
MaeI	CTAG	4 cut(s)	60, 171, 203, 225
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MboII	GAAGA	3 cut(s)	33, 36, 261
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	2 cut(s)	406, 414
MlyI	GAGTC	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	1 cut(s)	392
NlaIII	CATG	2 cut(s)	93, 300
NlaIV	GGNNCC	1 cut(s)	377
NmuCI	GTSAC	1 cut(s)	154
PaqCI	CACCTGC	1 cut(s)	308
PauI	GCGCGC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	244
Pfl23II	CGTACG	1 cut(s)	258
PkrI	GCNGC	3 cut(s)	111, 114, 316
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspLI	CGTACG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	377
PteI	GCGCGC	1 cut(s)	279
RsaI	GTAC	2 cut(s)	229, 260
RsaNI	GTAC	2 cut(s)	228, 259
SatI	GCNGC	3 cut(s)	110, 113, 315
Sau3AI	GATC	1 cut(s)	392
ScaI	AGTACT	1 cut(s)	229
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	7 cut(s)	21, 65, 102, 117, 165, 308, 322
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SpeI	ACTAGT	1 cut(s)	224
Sse9I	AATT	2 cut(s)	406, 414
SspMI	CTAG	4 cut(s)	60, 171, 203, 225
StyD4I	CCNGG	1 cut(s)	18
TaqI	TCGA	3 cut(s)	34, 242, 391
TasI	AATT	2 cut(s)	406, 414
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	244
TscAI	CASTG	2 cut(s)	163, 348
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	3 cut(s)	109, 112, 314
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	3 cut(s)	66, 68, 213
TspRI	CASTG	2 cut(s)	163, 348
VneI	GTGCAC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	414
XspI	CTAG	4 cut(s)	60, 171, 203, 225
ZrmI	AGTACT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.