Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004687

Physical Location & Seq

Genomic Coordinates Reverse (-)

41576114 .. 41577013

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1282000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGAAACAGCAATCTGGAGCTTCATCATCCTTCTGCTGATTCACGCTTCCCTAACCCTAATGAAACCCAGCAACAAGAACAACAGCAGCGGCTGACCATTTTCTACAACGGAATGGTGTGCGTTTGTGATGTTACAGAGCTTCAGGCCAGATCCATCCTTTTTCTTGCAAACAAAGAAATGGAGGAAGGGGTGAATAGTCTCTTTACTCCTCCAAGTGGATCAGCAGAACCACCTTCACCAAATGTGATGTCTCCACTGTGTAGCCCCGTTGCTGGTATGTCCATGAAGAAATCACTCCAAAGGTTTTTGCAGAAGAGAAAGCATCGGACTCAAGCAACATCTCCATACCATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

120

Amino Acids

13.47

Weight (kDa)

8.56

Isoelectric Point (pI)

81.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	27 - 58	6e-13	tify domain
Jas_motif	PF09425	97 - 117	4.1e-10	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30135 AT2G34600
fragaria_vesca	FvH4_3g05360 FvH4_3g05370
malus_domestica	MD05G1282000.v1.1 MD05G1282100.v1.1 MD10G1260700.v1.1
prunus_persica	Prupe.4G082500_v2.0.a1
pyrus_communis	pycom10g21670 pycom10g21680
rosa_chinensis	RchiOBHm_Chr5g0014381 RchiOBHm_Chr5g0014391
rosa_laevigata	RLG00000032103 RLG00000032104
rosa_multiflora	Rmu_co8215942.1_g000001 Rmu_co8389687.1_g000001 Rmu_sc0039946.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062200 Rroxscaffold_1G00062210
rosa_rugosa	Rorug05G0017600 Rorug05G0017700
rosa_samantha	Rh5AG112400 Rh5AG112500 Rh5BG109100 Rh5BG109200 Rh5CG120900 Rh5CG121000 Rh5DG108100 Rh5DG108200
rosa_wichuraiana	Rw5G009750 Rw5G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	91
AclWI	GGATC	2 cut(s)	147, 229
AcuI	CTGAAG	1 cut(s)	128
AfiI	CCNNNNNNNGG	2 cut(s)	218, 275
AluBI	AGCT	2 cut(s)	22, 142
AluI	AGCT	2 cut(s)	22, 142
Alw26I	GTCTC	2 cut(s)	206, 258
AlwI	GGATC	2 cut(s)	147, 229
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	88
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AsuHPI	GGTGA	2 cut(s)	205, 231
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	206, 258
BfaI	CTAG	1 cut(s)	358
BisI	GCNGC	2 cut(s)	89, 92
BlsI	GCNGC	2 cut(s)	90, 93
BmsI	GCATC	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 275
BseGI	GGATG	2 cut(s)	28, 156
BseLI	CCNNNNNNNGG	2 cut(s)	218, 275
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	100
BseYI	CCCAGC	1 cut(s)	69
BshFI	GGCC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	218, 275
BsmAI	GTCTC	2 cut(s)	206, 258
BsnI	GGCC	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	152, 221
BspACI	CCGC	1 cut(s)	91
BspANI	GGCC	1 cut(s)	149
BspPI	GGATC	2 cut(s)	147, 229
BssMI	GATC	2 cut(s)	152, 221
Bst4CI	ACNGT	1 cut(s)	261
Bst6I	CTCTTC	1 cut(s)	311
BstF5I	GGATG	2 cut(s)	28, 156
BstKTI	GATC	2 cut(s)	155, 224
BstMAI	GTCTC	2 cut(s)	206, 258
BstMBI	GATC	2 cut(s)	152, 221
BstV1I	GCAGC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	28, 156
BtsIMutI	CAGTG	1 cut(s)	257
CaiI	CAGNNNCTG	1 cut(s)	94
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	5 cut(s)	22, 94, 142, 149, 267
CviKI_1	RGCY	5 cut(s)	22, 94, 142, 149, 267
DpnI	GATC	2 cut(s)	154, 223
DpnII	GATC	2 cut(s)	152, 221
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	128
FaeI	CATG	1 cut(s)	289
FaiI	YATR	3 cut(s)	281, 287, 349
FatI	CATG	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	89, 92
FokI	GGATG	2 cut(s)	15, 143
Fsp4HI	GCNGC	2 cut(s)	89, 92
FspBI	CTAG	1 cut(s)	358
GluI	GCNGC	2 cut(s)	89, 92
GsaI	CCCAGC	1 cut(s)	73
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	149
Hin1II	CATG	1 cut(s)	289
HinfI	GANTC	2 cut(s)	41, 331
HphI	GGTGA	2 cut(s)	205, 231
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	1 cut(s)	17
HpyAV	CCTTC	3 cut(s)	42, 182, 246
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4V	TGCA	2 cut(s)	170, 313
Hsp92II	CATG	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	152, 221
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	5 cut(s)	2, 83, 131, 163, 261
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	358
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	154, 223
MboI	GATC	2 cut(s)	152, 221
MboII	GAAGA	2 cut(s)	301, 328
MflI	RGATCY	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	2 cut(s)	178, 222
MspA1I	CMGCKG	1 cut(s)	91
NdeII	GATC	2 cut(s)	152, 221
NlaIII	CATG	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	90, 93
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	69
PstNI	CAGNNNCTG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	152
SatI	GCNGC	2 cut(s)	89, 92
Sau3AI	GATC	2 cut(s)	152, 221
SchI	GAGTC	1 cut(s)	325
SetI	ASST	4 cut(s)	24, 144, 238, 308
SfaNI	GCATC	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
SsiI	CCGC	1 cut(s)	91
SspMI	CTAG	1 cut(s)	358
TaaI	ACNGT	1 cut(s)	261
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	41
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	1 cut(s)	88
TspDTI	ATGAA	3 cut(s)	14, 78, 302
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	264
XspI	CTAG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.