Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8215942.1

Orthogroup ID

OG0004687

Physical Location & Seq

Genomic Coordinates Forward (+)

363 .. 650

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8215942.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgaggaggaattgcaatttggagctctgccttaatacttccggtgctaattccggcttccctcttcgcaaccaccacgaccgccgtgccgtgctggaatctagttctggaaccccgcggcaacagcagcagccgttgaccatcttctacgatggaatgatgtgtgtttctgatgttacagagcttaaggtaggtttatgtttcgttatgtttgttaagatagatgatcttcttaatttccagaagaatccttcatacatgtcaagattgatgttcagattaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

95

Amino Acids

10.92

Weight (kDa)

8.86

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30135 AT2G34600
fragaria_vesca	FvH4_3g05360 FvH4_3g05370
malus_domestica	MD05G1282000.v1.1 MD05G1282100.v1.1 MD10G1260700.v1.1
prunus_persica	Prupe.4G082500_v2.0.a1
pyrus_communis	pycom10g21670 pycom10g21680
rosa_chinensis	RchiOBHm_Chr5g0014381 RchiOBHm_Chr5g0014391
rosa_laevigata	RLG00000032103 RLG00000032104
rosa_multiflora	Rmu_co8215942.1_g000001 Rmu_co8389687.1_g000001 Rmu_sc0039946.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062200 Rroxscaffold_1G00062210
rosa_rugosa	Rorug05G0017600 Rorug05G0017700
rosa_samantha	Rh5AG112400 Rh5AG112500 Rh5BG109100 Rh5BG109200 Rh5CG120900 Rh5CG121000 Rh5DG108100 Rh5DG108200
rosa_wichuraiana	Rw5G009750 Rw5G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	118
AciI	CCGC	3 cut(s)	82, 116, 118
AflII	CTTAAG	1 cut(s)	185
AflIII	ACRYGT	1 cut(s)	258
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	3 cut(s)	25, 184, 285
AluI	AGCT	3 cut(s)	25, 184, 285
Alw21I	GWGCWC	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	127, 130
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	139, 142
BccI	CCATC	2 cut(s)	146, 149
BceAI	ACGGC	3 cut(s)	69, 74, 118
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BfaI	CTAG	2 cut(s)	102, 286
BfrI	CTTAAG	1 cut(s)	185
BisI	GCNGC	3 cut(s)	119, 128, 131
BlsI	GCNGC	3 cut(s)	120, 129, 132
BmiI	GGNNCC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	2 cut(s)	139, 142
Bsh1236I	CGCG	1 cut(s)	118
Bsh1285I	CGRYCG	1 cut(s)	82
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	42, 54
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	3 cut(s)	82, 116, 118
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	112
BspTI	CTTAAG	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	69
BstAFI	CTTAAG	1 cut(s)	185
BstDSI	CCRYGG	1 cut(s)	116
BstFNI	CGCG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 127
BstNSI	RCATGY	1 cut(s)	262
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	2 cut(s)	139, 142
BtgI	CCRYGG	1 cut(s)	116
Cfr42I	CCGCGG	1 cut(s)	119
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	5 cut(s)	25, 57, 133, 184, 285
CviKI_1	RGCY	5 cut(s)	25, 57, 133, 184, 285
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	1 cut(s)	262
FaiI	YATR	4 cut(s)	199, 209, 256, 260
FatI	CATG	1 cut(s)	258
FauI	CCCGC	1 cut(s)	123
Fnu4HI	GCNGC	3 cut(s)	119, 128, 131
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	3 cut(s)	119, 128, 131
FspBI	CTAG	2 cut(s)	102, 286
GluI	GCNGC	3 cut(s)	119, 128, 131
HapII	CCGG	2 cut(s)	42, 54
Hin1II	CATG	1 cut(s)	262
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	2 cut(s)	98, 247
HpaII	CCGG	2 cut(s)	42, 54
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	2 cut(s)	172, 278
Hpy188III	TCNNGA	3 cut(s)	108, 241, 264
Hpy8I	GTNNAC	1 cut(s)	138
HpyAV	CCTTC	1 cut(s)	261
HpyCH4V	TGCA	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 127
Hsp92II	CATG	1 cut(s)	262
KspI	CCGCGG	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	5 cut(s)	55, 67, 80, 93, 254
Lsp1109I	GCAGC	2 cut(s)	139, 142
MaeI	CTAG	2 cut(s)	102, 286
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	4 cut(s)	56, 136, 221, 256
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	10, 16, 49, 235
MnlI	CCTC	1 cut(s)	72
MseI	TTAA	5 cut(s)	33, 186, 216, 234, 281
MspA1I	CMGCKG	1 cut(s)	118
MspCI	CTTAAG	1 cut(s)	185
MspI	CCGG	2 cut(s)	42, 54
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	124, 127
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	262
PciI	ACATGT	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	98, 247
PkrI	GCNGC	3 cut(s)	120, 129, 132
PscI	ACATGT	1 cut(s)	258
Psp124BI	GAGCTC	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	112
SacI	GAGCTC	1 cut(s)	27
SacII	CCGCGG	1 cut(s)	119
SaqAI	TTAA	5 cut(s)	33, 186, 216, 234, 281
SatI	GCNGC	3 cut(s)	119, 128, 131
Sau3AI	GATC	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	5 cut(s)	27, 186, 192, 196, 287
Sfr303I	CCGCGG	1 cut(s)	119
SgrBI	CCGCGG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	4 cut(s)	10, 16, 49, 235
SsiI	CCGC	3 cut(s)	82, 116, 118
SspMI	CTAG	2 cut(s)	102, 286
SstI	GAGCTC	1 cut(s)	27
TasI	AATT	4 cut(s)	10, 16, 49, 235
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	2 cut(s)	98, 247
Tru1I	TTAA	5 cut(s)	33, 186, 216, 234, 281
Tru9I	TTAA	5 cut(s)	33, 186, 216, 234, 281
TseI	GCWGC	2 cut(s)	127, 130
TspDTI	ATGAA	1 cut(s)	243
Vha464I	CTTAAG	1 cut(s)	185
XceI	RCATGY	1 cut(s)	262
XspI	CTAG	2 cut(s)	102, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.