AT2G34700

pollen Ole e 1 allergen and extensin family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012982
Physical Location & Seq
Reverse (-)
14634090 .. 14635627
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34700.1

Sequence Viewer

Length: 528 bp
ATGGGTCTGGTAACAAAAGCTCTCAAATATCTCTTACTCCTTTCTATTTCCTTGACTTTCATCTACACCAATGCAGTTTCATCCGCTTCTCCAATGACTCCACCGTCATCGCCGGCTAAGATGAGCAGGAGACTTGTGGCAGTTGAAGGCATGGTTTATTGCAAGTCATGCAAGTATTCCGGCGTCGATACTCTCTTGGAAGCATCTCCTCTTCAAGGAGCGACCGTAAAGCTTGCATGCAACAACACAAAGAGAGGTGTGACAATGGAGACAAAAACAGACAAAAACGGATACTTCTTCATGCTAGCCCCAAAAAAACTCACCACCTACGCTTTCCACACGTGCCGGGCTTGGCCTACGAATCCTGGACCCACGACTGCAACGATGACATGCACCGTGCCGTCAAAGCTCAACAATGGAATAACCGGTGCTATGCTTAAGCCTTCTAAGACAATCAACATCGGTGAACACGACTACGTTCTCTTCTCTGTTGGTCCCTTCGCGTTTGAGCCTGCCTGTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

175

Amino Acids

18.83

Weight (kDa)

9.45

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 48 - 143 3.9e-21 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012982)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34700
fragaria_vesca FvH4_3g09040
malus_domestica MD05G1338000.v1.1 MD10G1293100.v1.1
prunus_persica Prupe.4G048800_v2.0.a1
pyrus_communis pycom05g28950 pycom10g24510 pycom14g04310
rosa_chinensis RchiOBHm_Chr5g0008631
rosa_laevigata RLG00000031588
rosa_multiflora Rmu_sc0001665.1_g000026
rosa_roxburghii Rroxscaffold_1G00067920
rosa_rugosa Rorug04G0437500
rosa_samantha Rh5AG066000 Rh5BG063400 Rh5CG073600 Rh5DG062800
rosa_wichuraiana Rw5G006290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 103
AccII CGCG 1 cut(s) 503
AciI CCGC 1 cut(s) 84
AcvI CACGTG 1 cut(s) 342
AcyI GRCGYC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 215
AflII CTTAAG 1 cut(s) 437
AflIII ACRYGT 1 cut(s) 339
AgeI ACCGGT 1 cut(s) 425
AgsI TTSAA 2 cut(s) 146, 215
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 3 cut(s) 20, 232, 409
AluI AGCT 3 cut(s) 20, 232, 409
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 2 cut(s) 124, 263
AoxI GGCC 1 cut(s) 353
AsiGI ACCGGT 1 cut(s) 425
AspS9I GGNCC 2 cut(s) 368, 494
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 313, 476
AsuNHI GCTAGC 1 cut(s) 304
AvaII GGWCC 2 cut(s) 368, 494
BbrPI CACGTG 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 523
BceAI ACGGC 1 cut(s) 385
BciT130I CCWGG 1 cut(s) 366
BciVI GTATCC 1 cut(s) 284
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 2 cut(s) 124, 263
BfaI CTAG 1 cut(s) 305
BfrI CTTAAG 1 cut(s) 437
BfuI GTATCC 1 cut(s) 284
Bme1390I CCNGG 2 cut(s) 347, 366
Bme18I GGWCC 2 cut(s) 368, 494
BmgT120I GGNCC 2 cut(s) 368, 494
BmiI GGNNCC 2 cut(s) 370, 496
BmrFI CCNGG 2 cut(s) 347, 366
BmsI GCATC 1 cut(s) 212
BmtI GCTAGC 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 347
BsaAI YACGTR 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 425
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse118I RCCGGY 2 cut(s) 112, 425
BseBI CCWGG 1 cut(s) 366
BseGI GGATG 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 198
Bsh1236I CGCG 1 cut(s) 503
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 1 cut(s) 355
BshTI ACCGGT 1 cut(s) 425
BsiEI CGRYCG 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 523
BsiSI CCGG 4 cut(s) 113, 180, 346, 426
BslFI GGGAC 1 cut(s) 480
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 2 cut(s) 124, 263
BsmFI GGGAC 1 cut(s) 480
BsnI GGCC 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 523
BspACI CCGC 1 cut(s) 84
BspANI GGCC 1 cut(s) 355
BspFNI CGCG 1 cut(s) 503
BspLI GGNNCC 2 cut(s) 370, 496
BspOI GCTAGC 1 cut(s) 308
BspTI CTTAAG 1 cut(s) 437
BsrFI RCCGGY 2 cut(s) 112, 425
BssAI RCCGGY 2 cut(s) 112, 425
BssNI GRCGYC 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 3 cut(s) 105, 226, 397
Bst6I CTCTTC 2 cut(s) 216, 488
BstACI GRCGYC 1 cut(s) 183
BstAFI CTTAAG 1 cut(s) 437
BstAPI GCANNNNNTGC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 342
BstC8I GCNNGC 5 cut(s) 114, 234, 238, 306, 513
BstDEI CTNAG 2 cut(s) 117, 447
BstENI CCTNNNNNAGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 80
BstFNI CGCG 1 cut(s) 503
BstMAI GTCTC 2 cut(s) 124, 263
BstMCI CGRYCG 1 cut(s) 225
BstMWI GCNNNNNNNGC 2 cut(s) 168, 406
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 2 cut(s) 240, 393
BstSCI CCNGG 2 cut(s) 345, 364
BstUI CGCG 1 cut(s) 503
BsuI GTATCC 1 cut(s) 284
BsuRI GGCC 1 cut(s) 355
BtgZI GCGATG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 80
Cac8I GCNNGC 5 cut(s) 114, 234, 238, 306, 513
Cfr10I RCCGGY 2 cut(s) 112, 425
Cfr13I GGNCC 2 cut(s) 368, 494
CseI GACGC 1 cut(s) 172
CspAI ACCGGT 1 cut(s) 425
CviAII CATG 5 cut(s) 151, 168, 237, 301, 390
CviJI RGCY 9 cut(s) 20, 116, 232, 308, 350, 355, 409, 442, 511
CviKI_1 RGCY 9 cut(s) 20, 116, 232, 308, 350, 355, 409, 442, 511
DdeI CTNAG 2 cut(s) 117, 447
DrdI GACNNNNNNGTC 1 cut(s) 103
DseDI GACNNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 216, 488
EarI CTCTTC 2 cut(s) 216, 488
Eco47I GGWCC 2 cut(s) 368, 494
Eco72I CACGTG 1 cut(s) 342
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 364
FaeI CATG 5 cut(s) 154, 171, 240, 304, 393
FaiI YATR 6 cut(s) 152, 169, 238, 302, 391, 434
FaqI GGGAC 1 cut(s) 480
FatI CATG 5 cut(s) 150, 167, 236, 300, 389
FokI GGATG 1 cut(s) 67
FspBI CTAG 1 cut(s) 305
HaeIII GGCC 1 cut(s) 355
HapII CCGG 4 cut(s) 113, 180, 346, 426
HgaI GACGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 5 cut(s) 154, 171, 240, 304, 393
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 2 cut(s) 97, 361
HpaII CCGG 4 cut(s) 113, 180, 346, 426
HphI GGTGA 2 cut(s) 313, 476
Hpy166II GTNNAC 1 cut(s) 467
Hpy8I GTNNAC 1 cut(s) 467
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 3 cut(s) 140, 453, 508
HpyCH4III ACNGT 3 cut(s) 105, 226, 397
HpyCH4IV ACGT 2 cut(s) 341, 477
HpyCH4V TGCA 7 cut(s) 74, 162, 171, 236, 240, 380, 393
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 406
HpyF3I CTNAG 2 cut(s) 117, 447
HpySE526I ACGT 2 cut(s) 341, 477
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 5 cut(s) 154, 171, 240, 304, 393
KroI GCCGGC 1 cut(s) 112
KroNI GCCGGC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 7 cut(s) 112, 126, 193, 351, 359, 378, 439
LweI GCATC 1 cut(s) 212
MaeI CTAG 1 cut(s) 305
MaeII ACGT 2 cut(s) 341, 477
MaeIII GTNAC 2 cut(s) 10, 259
MboII GAAGA 3 cut(s) 203, 289, 475
MhlI GDGCHC 1 cut(s) 523
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 2 cut(s) 219, 248
MroNI GCCGGC 1 cut(s) 112
MseI TTAA 1 cut(s) 438
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 4 cut(s) 113, 180, 346, 426
MspR9I CCNGG 2 cut(s) 347, 366
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 2 cut(s) 168, 406
NaeI GCCGGC 1 cut(s) 114
NciI CCSGG 1 cut(s) 347
NgoMIV GCCGGC 1 cut(s) 112
NheI GCTAGC 1 cut(s) 304
NlaIII CATG 5 cut(s) 154, 171, 240, 304, 393
NlaIV GGNNCC 2 cut(s) 370, 496
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 2 cut(s) 240, 393
PaeI GCATGC 1 cut(s) 240
PcsI WCGNNNNNNNCGW 2 cut(s) 380, 468
PdiI GCCGGC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 361
PfoI TCCNGGA 1 cut(s) 364
PinAI ACCGGT 1 cut(s) 425
PleI GAGTC 1 cut(s) 91
PmaCI CACGTG 1 cut(s) 342
PmlI CACGTG 1 cut(s) 342
PpsI GAGTC 1 cut(s) 91
Ppu21I YACGTR 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 364
PspCI CACGTG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 2 cut(s) 370, 496
PspPI GGNCC 2 cut(s) 368, 494
SaqAI TTAA 1 cut(s) 438
Sau96I GGNCC 2 cut(s) 368, 494
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 2 cut(s) 347, 366
SduI GDGCHC 1 cut(s) 523
SetI ASST 7 cut(s) 22, 234, 259, 329, 344, 411, 480
SfaNI GCATC 1 cut(s) 212
SinI GGWCC 2 cut(s) 368, 494
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
SphI GCATGC 1 cut(s) 240
SsiI CCGC 1 cut(s) 84
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 345, 364
TaaI ACNGT 3 cut(s) 105, 226, 397
TaiI ACGT 2 cut(s) 344, 480
TaqI TCGA 1 cut(s) 186
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TseFI GTSAC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 3 cut(s) 49, 69, 289
TspGWI ACGGA 1 cut(s) 303
Vha464I CTTAAG 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 368, 494
XagI CCTNNNNNAGG 1 cut(s) 213
XceI RCATGY 2 cut(s) 240, 393
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.