Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0012982

Physical Location & Seq

Genomic Coordinates Reverse (-)

5235121 .. 5236023

Gene Structure 903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG063400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGTTTTGCAAAAGCTTTAGTTTTTGTTCAGCTCTCTATTCTCCTACTAAACACCTTCACTGTTCTTGCACAGCTCTCAGCCATTGAAGCTCAGGCACCGGTTCCGTCGCGCCATCATGGTTACTATGCACACCCAATAGCCTCCCCTGCCCACCCTCCCACTCACGGCCACCACCACCACCACCCCAAACCTCACCCACACCCTCCAACCGCTTCCCCGGTCCACCCTCCGGCTCACGCTCCTGTCCACCCTCCCACTCACCACCACCACGCTCACCCACCTTCCCACATGCCGGCTCACTCTCCCTACCACCACGCTCCCGTTCAGCCCCCGAGCCACCCTCCCACTCACCACGCACCACCGGCTCACTCCCCTGCCCCGGTTCACCCTCCTACCTACCCTCCCAAGAAGCCCTTCCCACGTAGCTTCGTGGCCGTTCAAGGCGTCGTCTACTGCAAGTCTTGCAAGTACTCCGGCGTCGACACTCTTCTCAACGCCACCGCCATCGCCGGTGCTACCGTGAAGCTCCAGTGCAACAACACCAAGTACCCGCTTGTCGTGAAGGGCACGACGGACAAGCACGGCTACTTCTTCATCACAGCTCCCAAGACCATCACAACCTACGGTGCCCACAAGTGCAAGGCCTCGCTAGTCTCCGCTCCGACCACCGCGTGTTCCAAGATCACCGACTTCCACGGCGGACTTACGGGCGCCGTTCTGAGGCCATCCAAGCCTTTCCTGTCGGAGAAGAAGCTCCCCTTCCTTCTGTACACCGTCGGTCCGTTCGCCTTCGAGTCCAAGTGCCCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0016020 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:0080050 GO:1901700 GO:2000026 GO:2000033 GO:2000034 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

271

Amino Acids

29.21

Weight (kDa)

9.68

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pollen_Ole_e_1	PF01190	147 - 238	5.5e-24	Pollen protein Ole e 1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34700
fragaria_vesca	FvH4_3g09040
malus_domestica	MD05G1338000.v1.1 MD10G1293100.v1.1
prunus_persica	Prupe.4G048800_v2.0.a1
pyrus_communis	pycom05g28950 pycom10g24510 pycom14g04310
rosa_chinensis	RchiOBHm_Chr5g0008631
rosa_laevigata	RLG00000031588
rosa_multiflora	Rmu_sc0001665.1_g000026
rosa_roxburghii	Rroxscaffold_1G00067920
rosa_rugosa	Rorug04G0437500
rosa_samantha	Rh5AG066000 Rh5BG063400 Rh5CG073600 Rh5DG062800
rosa_wichuraiana	Rw5G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	97, 629, 713
AccBSI	CCGCTC	1 cut(s)	662
AccI	GTMKAC	2 cut(s)	453, 483
AccII	CGCG	2 cut(s)	112, 674
AciI	CCGC	6 cut(s)	213, 504, 554, 660, 672, 702
AcoI	YGGCCR	2 cut(s)	169, 435
AcyI	GRCGYC	3 cut(s)	447, 480, 714
AdeI	CACNNNGTG	1 cut(s)	675
AfaI	GTAC	3 cut(s)	473, 551, 773
AfiI	CCNNNNNNNGG	5 cut(s)	167, 232, 295, 382, 723
AgeI	ACCGGT	1 cut(s)	100
AgsI	TTSAA	2 cut(s)	89, 443
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	8 cut(s)	17, 34, 76, 92, 429, 529, 605, 757
AluI	AGCT	8 cut(s)	17, 34, 76, 92, 429, 529, 605, 757
Alw26I	GTCTC	1 cut(s)	661
Ama87I	CYCGRG	1 cut(s)	334
AoxI	GGCC	4 cut(s)	169, 435, 645, 725
AsiGI	ACCGGT	1 cut(s)	100
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	2 cut(s)	114, 716
AspS9I	GGNCC	2 cut(s)	223, 782
AsuC2I	CCSGG	2 cut(s)	221, 383
AsuHPI	GGTGA	6 cut(s)	188, 254, 269, 344, 380, 679
AvaI	CYCGRG	1 cut(s)	334
AvaII	GGWCC	2 cut(s)	223, 782
BaeGI	GKGCMC	3 cut(s)	572, 634, 809
BanI	GGYRCC	3 cut(s)	97, 629, 713
BccI	CCATC	4 cut(s)	123, 515, 623, 736
BceAI	ACGGC	5 cut(s)	184, 422, 601, 701, 715
BcnI	CCSGG	2 cut(s)	221, 383
BcoDI	GTCTC	1 cut(s)	661
BfaI	CTAG	1 cut(s)	653
BfoI	RGCGCY	1 cut(s)	717
BmcAI	AGTACT	1 cut(s)	473
Bme1390I	CCNGG	2 cut(s)	221, 383
Bme18I	GGWCC	2 cut(s)	223, 782
BmeT110I	CYCGRG	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	223, 782
BmiI	GGNNCC	4 cut(s)	99, 105, 631, 715
BmrFI	CCNGG	2 cut(s)	221, 383
BplI	GAGNNNNNCTC	2 cut(s)	328, 360
BpmI	CTGGAG	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	93
BpuMI	CCSGG	2 cut(s)	221, 383
BsaAI	YACGTR	1 cut(s)	425
BsaHI	GRCGYC	3 cut(s)	447, 480, 714
BsaJI	CCNNGG	3 cut(s)	219, 381, 697
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	5 cut(s)	167, 232, 295, 382, 723
Bse118I	RCCGGY	4 cut(s)	100, 295, 364, 512
Bse1I	ACTGG	1 cut(s)	532
BseDI	CCNNGG	3 cut(s)	219, 381, 697
BseGI	GGATG	1 cut(s)	728
BseLI	CCNNNNNNNGG	5 cut(s)	167, 232, 295, 382, 723
BseMII	CTCAG	3 cut(s)	93, 107, 713
BseNI	ACTGG	1 cut(s)	532
BseSI	GKGCMC	3 cut(s)	572, 634, 809
Bsh1236I	CGCG	2 cut(s)	112, 674
BshFI	GGCC	4 cut(s)	171, 437, 647, 727
BshNI	GGYRCC	3 cut(s)	97, 629, 713
BshTI	ACCGGT	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	334
BsiSI	CCGG	8 cut(s)	101, 221, 233, 296, 365, 383, 477, 513
BslI	CCNNNNNNNGG	5 cut(s)	167, 232, 295, 382, 723
BsmAI	GTCTC	1 cut(s)	661
BsnI	GGCC	4 cut(s)	171, 437, 647, 727
BsoBI	CYCGRG	1 cut(s)	334
Bsp1286I	GDGCHC	3 cut(s)	572, 634, 809
Bsp1407I	TGTACA	1 cut(s)	771
Bsp143I	GATC	1 cut(s)	684
BspACI	CCGC	6 cut(s)	213, 504, 554, 660, 672, 702
BspANI	GGCC	4 cut(s)	171, 437, 647, 727
BspCNI	CTCAG	3 cut(s)	92, 106, 714
BspFNI	CGCG	2 cut(s)	112, 674
BspLI	GGNNCC	4 cut(s)	99, 105, 631, 715
BspT107I	GGYRCC	3 cut(s)	97, 629, 713
BsrBI	CCGCTC	1 cut(s)	662
BsrFI	RCCGGY	4 cut(s)	100, 295, 364, 512
BsrGI	TGTACA	1 cut(s)	771
BsrI	ACTGG	1 cut(s)	532
BssAI	RCCGGY	4 cut(s)	100, 295, 364, 512
BssECI	CCNNGG	3 cut(s)	219, 381, 697
BssMI	GATC	1 cut(s)	684
BssNI	GRCGYC	3 cut(s)	447, 480, 714
Bst4CI	ACNGT	4 cut(s)	64, 523, 629, 778
Bst6I	CTCTTC	1 cut(s)	495
BstACI	GRCGYC	3 cut(s)	447, 480, 714
BstAPI	GCANNNNNTGC	1 cut(s)	465
BstAUI	TGTACA	1 cut(s)	771
BstBAI	YACGTR	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	3 cut(s)	79, 93, 722
BstDSI	CCRYGG	1 cut(s)	697
BstF5I	GGATG	1 cut(s)	728
BstFNI	CGCG	2 cut(s)	112, 674
BstH2I	RGCGCY	1 cut(s)	717
BstHHI	GCGC	2 cut(s)	114, 716
BstKTI	GATC	1 cut(s)	687
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	1 cut(s)	684
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 149, 365, 465, 733
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	2 cut(s)	219, 381
BstSLI	GKGCMC	3 cut(s)	572, 634, 809
BstUI	CGCG	2 cut(s)	112, 674
BsuRI	GGCC	4 cut(s)	171, 437, 647, 727
BtgI	CCRYGG	1 cut(s)	697
BtgZI	GCGATG	1 cut(s)	493
BtsCI	GGATG	1 cut(s)	728
BtsIMutI	CAGTG	2 cut(s)	60, 539
Cac8I	GCNNGC	1 cut(s)	297
CfoI	GCGC	2 cut(s)	114, 716
Cfr10I	RCCGGY	4 cut(s)	100, 295, 364, 512
Cfr13I	GGNCC	2 cut(s)	223, 782
CpoI	CGGWCCG	1 cut(s)	782
CseI	GACGC	2 cut(s)	436, 469
Csp6I	GTAC	3 cut(s)	472, 550, 772
CspAI	ACCGGT	1 cut(s)	100
CspI	CGGWCCG	1 cut(s)	782
CviAII	CATG	2 cut(s)	119, 292
CviQI	GTAC	3 cut(s)	472, 550, 772
DdeI	CTNAG	3 cut(s)	79, 93, 722
DinI	GGCGCC	1 cut(s)	715
DpnI	GATC	1 cut(s)	686
DpnII	GATC	1 cut(s)	684
DraIII	CACNNNGTG	1 cut(s)	675
EaeI	YGGCCR	2 cut(s)	169, 435
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
EciI	GGCGGA	1 cut(s)	717
Eco147I	AGGCCT	1 cut(s)	647
Eco47I	GGWCC	2 cut(s)	223, 782
Eco88I	CYCGRG	1 cut(s)	334
EgeI	GGCGCC	1 cut(s)	715
EheI	GGCGCC	1 cut(s)	715
FaeI	CATG	2 cut(s)	122, 295
FaiI	YATR	3 cut(s)	120, 129, 293
FalI	AAGNNNNNCTT	4 cut(s)	401, 433, 746, 778
FatI	CATG	2 cut(s)	118, 291
FauI	CCCGC	1 cut(s)	561
FblI	GTMKAC	2 cut(s)	453, 483
FokI	GGATG	1 cut(s)	715
FspBI	CTAG	1 cut(s)	653
GlaI	GCGC	2 cut(s)	113, 715
GsuI	CTGGAG	1 cut(s)	515
HaeII	RGCGCY	1 cut(s)	717
HaeIII	GGCC	4 cut(s)	171, 437, 647, 727
HapII	CCGG	8 cut(s)	101, 221, 233, 296, 365, 383, 477, 513
HgaI	GACGC	2 cut(s)	436, 469
HhaI	GCGC	2 cut(s)	114, 716
Hin1I	GRCGYC	3 cut(s)	447, 480, 714
Hin1II	CATG	2 cut(s)	122, 295
Hin6I	GCGC	2 cut(s)	112, 714
HinP1I	GCGC	2 cut(s)	112, 714
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	1 cut(s)	797
HpaII	CCGG	8 cut(s)	101, 221, 233, 296, 365, 383, 477, 513
HphI	GGTGA	6 cut(s)	188, 254, 269, 344, 380, 679
Hpy166II	GTNNAC	6 cut(s)	226, 250, 388, 454, 484, 774
Hpy188I	TCNGA	3 cut(s)	666, 723, 748
Hpy188III	TCNNGA	1 cut(s)	562
Hpy8I	GTNNAC	6 cut(s)	226, 250, 388, 454, 484, 774
Hpy99I	CGWCG	5 cut(s)	112, 452, 485, 577, 782
HpyAV	CCTTC	7 cut(s)	67, 294, 427, 559, 772, 776, 802
HpyCH4III	ACNGT	4 cut(s)	64, 523, 629, 778
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	7 cut(s)	11, 71, 131, 459, 468, 537, 642
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 149, 365, 465, 733
HpyF3I	CTNAG	3 cut(s)	79, 93, 722
HpySE526I	ACGT	1 cut(s)	424
Hsp92I	GRCGYC	3 cut(s)	447, 480, 714
Hsp92II	CATG	2 cut(s)	122, 295
HspAI	GCGC	2 cut(s)	112, 714
KasI	GGCGCC	1 cut(s)	713
KroI	GCCGGC	1 cut(s)	295
KroNI	GCCGGC	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	684
LmnI	GCTCC	6 cut(s)	247, 325, 534, 610, 667, 762
MaeI	CTAG	1 cut(s)	653
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	1 cut(s)	686
MbiI	CCGCTC	1 cut(s)	662
MboI	GATC	1 cut(s)	684
MboII	GAAGA	3 cut(s)	482, 586, 763
MhlI	GDGCHC	3 cut(s)	572, 634, 809
Mly113I	GGCGCC	1 cut(s)	714
MlyI	GAGTC	1 cut(s)	806
MmeI	TCCRAC	3 cut(s)	233, 689, 726
MroNI	GCCGGC	1 cut(s)	295
MroXI	GAANNNNTTC	1 cut(s)	416
MspI	CCGG	8 cut(s)	101, 221, 233, 296, 365, 383, 477, 513
MspR9I	CCNGG	2 cut(s)	221, 383
MvnI	CGCG	2 cut(s)	112, 674
MwoI	GCNNNNNNNGC	5 cut(s)	89, 149, 365, 465, 733
NaeI	GCCGGC	1 cut(s)	297
NarI	GGCGCC	1 cut(s)	714
NciI	CCSGG	2 cut(s)	221, 383
NdeII	GATC	1 cut(s)	684
NgoMIV	GCCGGC	1 cut(s)	295
NlaIII	CATG	2 cut(s)	122, 295
NlaIV	GGNNCC	4 cut(s)	99, 105, 631, 715
NspI	RCATGY	1 cut(s)	295
PceI	AGGCCT	1 cut(s)	647
PdiI	GCCGGC	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	416
PinAI	ACCGGT	1 cut(s)	100
PleI	GAGTC	1 cut(s)	805
PluTI	GGCGCC	1 cut(s)	717
PpsI	GAGTC	1 cut(s)	805
Ppu21I	YACGTR	1 cut(s)	425
PspN4I	GGNNCC	4 cut(s)	99, 105, 631, 715
PspPI	GGNCC	2 cut(s)	223, 782
RsaI	GTAC	3 cut(s)	473, 551, 773
RsaNI	GTAC	3 cut(s)	472, 550, 772
Rsr2I	CGGWCCG	1 cut(s)	782
RsrII	CGGWCCG	1 cut(s)	782
SalI	GTCGAC	1 cut(s)	482
Sau3AI	GATC	1 cut(s)	684
Sau96I	GGNCC	2 cut(s)	223, 782
ScaI	AGTACT	1 cut(s)	473
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	2 cut(s)	221, 383
SduI	GDGCHC	3 cut(s)	572, 634, 809
SfoI	GGCGCC	1 cut(s)	715
SgrAI	CRCCGGYG	1 cut(s)	512
SinI	GGWCC	2 cut(s)	223, 782
SseBI	AGGCCT	1 cut(s)	647
SsiI	CCGC	6 cut(s)	213, 504, 554, 660, 672, 702
SspDI	GGCGCC	1 cut(s)	713
SspMI	CTAG	1 cut(s)	653
StuI	AGGCCT	1 cut(s)	647
StyD4I	CCNGG	2 cut(s)	219, 381
TaaI	ACNGT	4 cut(s)	64, 523, 629, 778
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	2 cut(s)	483, 795
TaqII	GACCGA	1 cut(s)	770
TatI	WGTACW	2 cut(s)	471, 771
TscAI	CASTG	2 cut(s)	67, 539
TspDTI	ATGAA	1 cut(s)	586
TspGWI	ACGGA	3 cut(s)	96, 590, 774
TspRI	CASTG	2 cut(s)	67, 539
VpaK11BI	GGWCC	2 cut(s)	223, 782
XceI	RCATGY	1 cut(s)	295
XmiI	GTMKAC	2 cut(s)	453, 483
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	1 cut(s)	653
ZrmI	AGTACT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.