Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012982

Physical Location & Seq

Genomic Coordinates Reverse (-)

2329995 .. 2331290

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G048800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGTTTTGGTGAAGCTAAAGCTCTAGTCTTTGTGCAGCTCTCAGTTCTTCTACTGAGTTGCTTCACTGTGTTTGGAAATGTAATTGATGTTTTACCCCCAAGCTCTCCTCCCCACCACCATGTTCACTATTCACACCCAGTAGCTTCCCCTGCACACCCACCAACACACCACCACCACCACCACCACCCACACCCACACCCACACCCTCCTACTGCCTCCCCGGTTCACCCACCGGTTCACTCTCCAACCCATTCACCGGTCCACCCTCCAACCCATTCACCAGTTCACCCTCCAACCCATTCCCCGGTCCACCCACCAAGCCACCACCACCACCATGGCTACCCACCGGCTCACCCTCCTACTCACGTCCCAGTTCAACCCCCGAGTCACCCTCCAACCCACCATGCACCACCGGCTCACCCACCGATTCAGAGCCCAAGCCACCCCCCGGTTCACCCTCCGCAGTTCCCGCCTAAGAAACCTTTCCCAAGAAGCTTTGTAGCGGTGCAAGGCGTTGTTTACTGCAAGTCTTGCAAATACTCCGGCGTTGACACCCTCTTGGGCGCCTCCCCTGTTCTTGGAGCTACTATCAAGCTACAGTGCAACAACACCAAGTACCCATTGGTTGTGAAAACCAACACAGACAAAAATGGCTACTTTTTCATCACAGCACCCAAGACCATCACCACATTCGGAGCTCACAAGTGCAAGGTCTTCCTCGTCTCATCACCCTCTGCCACTTGCTCTAAGCCCTCTGATCTCCATGCCGGTTTGAGTGGTGCAGTCTTGAGGCCACAGAAGCCTTTCATGTCCAAGAAACTCCCATTCCTTCTCTACAATGTTGGCCCATTTGCCTTTGAGCCCAAATGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0016020 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:0080050 GO:1901700 GO:2000026 GO:2000033 GO:2000034 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

293

Amino Acids

31.67

Weight (kDa)

9.57

Isoelectric Point (pI)

61.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34700
fragaria_vesca	FvH4_3g09040
malus_domestica	MD05G1338000.v1.1 MD10G1293100.v1.1
prunus_persica	Prupe.4G048800_v2.0.a1
pyrus_communis	pycom05g28950 pycom10g24510 pycom14g04310
rosa_chinensis	RchiOBHm_Chr5g0008631
rosa_laevigata	RLG00000031588
rosa_multiflora	Rmu_sc0001665.1_g000026
rosa_roxburghii	Rroxscaffold_1G00067920
rosa_rugosa	Rorug04G0437500
rosa_samantha	Rh5AG066000 Rh5BG063400 Rh5CG073600 Rh5DG062800
rosa_wichuraiana	Rw5G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	566
AciI	CCGC	3 cut(s)	464, 473, 506
AcyI	GRCGYC	1 cut(s)	567
AfaI	GTAC	1 cut(s)	620
AfiI	CCNNNNNNNGG	4 cut(s)	259, 307, 451, 581
AgeI	ACCGGT	2 cut(s)	235, 259
AgsI	TTSAA	1 cut(s)	380
AjiI	CACGTC	1 cut(s)	370
AluBI	AGCT	9 cut(s)	17, 23, 40, 105, 146, 498, 587, 598, 701
AluI	AGCT	9 cut(s)	17, 23, 40, 105, 146, 498, 587, 598, 701
Alw21I	GWGCWC	1 cut(s)	703
Alw26I	GTCTC	1 cut(s)	730
Ama87I	CYCGRG	1 cut(s)	385
AoxI	GGCC	2 cut(s)	794, 847
ApeKI	GCWGC	1 cut(s)	37
AsiGI	ACCGGT	2 cut(s)	235, 259
Asp700I	GAANNNNTTC	2 cut(s)	485, 806
AspLEI	GCGC	1 cut(s)	569
AspS9I	GGNCC	3 cut(s)	262, 310, 848
AsuC2I	CCSGG	3 cut(s)	224, 308, 452
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	2 cut(s)	262, 310
BanI	GGYRCC	1 cut(s)	566
BanII	GRGCYC	3 cut(s)	440, 703, 867
BbsI	GAAGAC	1 cut(s)	709
Bbv12I	GWGCWC	1 cut(s)	703
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	692
BcnI	CCSGG	3 cut(s)	224, 308, 452
BcoDI	GTCTC	1 cut(s)	730
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	599
BfoI	RGCGCY	1 cut(s)	570
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme1390I	CCNGG	3 cut(s)	224, 308, 452
Bme18I	GGWCC	2 cut(s)	262, 310
BmeT110I	CYCGRG	1 cut(s)	385
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	3 cut(s)	262, 310, 848
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	3 cut(s)	224, 308, 452
BmrI	ACTGGG	2 cut(s)	134, 368
BmuI	ACTGGG	2 cut(s)	134, 368
BpiI	GAAGAC	1 cut(s)	709
BplI	GAGNNNNNCTC	2 cut(s)	379, 411
BpuEI	CTTGAG	1 cut(s)	811
BpuMI	CCSGG	3 cut(s)	224, 308, 452
BsaHI	GRCGYC	1 cut(s)	567
BsaJI	CCNNGG	4 cut(s)	222, 306, 337, 450
BsaWI	WCCGGW	2 cut(s)	235, 259
Bsc4I	CCNNNNNNNGG	4 cut(s)	259, 307, 451, 581
Bse118I	RCCGGY	5 cut(s)	235, 259, 349, 415, 770
Bse1I	ACTGG	3 cut(s)	140, 284, 374
BseDI	CCNNGG	4 cut(s)	222, 306, 337, 450
BseLI	CCNNNNNNNGG	4 cut(s)	259, 307, 451, 581
BseMII	CTCAG	2 cut(s)	47, 57
BseNI	ACTGG	3 cut(s)	140, 284, 374
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	49
BsgI	GTGCAG	3 cut(s)	56, 138, 804
BshFI	GGCC	2 cut(s)	796, 849
BshNI	GGYRCC	1 cut(s)	566
BshTI	ACCGGT	2 cut(s)	235, 259
BsiHKAI	GWGCWC	1 cut(s)	703
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	9 cut(s)	224, 236, 260, 308, 350, 416, 452, 546, 771
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	4 cut(s)	259, 307, 451, 581
BsmAI	GTCTC	1 cut(s)	730
BsmBI	CGTCTC	1 cut(s)	730
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	796, 849
BsoBI	CYCGRG	1 cut(s)	385
Bsp1286I	GDGCHC	3 cut(s)	440, 703, 867
Bsp143I	GATC	1 cut(s)	760
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	3 cut(s)	464, 473, 506
BspANI	GGCC	2 cut(s)	796, 849
BspCNI	CTCAG	2 cut(s)	48, 56
BspLI	GGNNCC	1 cut(s)	568
BspT107I	GGYRCC	1 cut(s)	566
BsrFI	RCCGGY	5 cut(s)	235, 259, 349, 415, 770
BsrI	ACTGG	3 cut(s)	140, 284, 374
BssAI	RCCGGY	5 cut(s)	235, 259, 349, 415, 770
BssECI	CCNNGG	4 cut(s)	222, 306, 337, 450
BssMI	GATC	1 cut(s)	760
BssNI	GRCGYC	1 cut(s)	567
BssT1I	CCWWGG	1 cut(s)	337
Bst4CI	ACNGT	2 cut(s)	70, 603
BstACI	GRCGYC	1 cut(s)	567
BstAPI	GCANNNNNTGC	1 cut(s)	534
BstDEI	CTNAG	4 cut(s)	43, 56, 477, 750
BstDSI	CCRYGG	1 cut(s)	337
BstH2I	RGCGCY	1 cut(s)	570
BstHHI	GCGC	1 cut(s)	569
BstKTI	GATC	1 cut(s)	763
BstMAI	GTCTC	1 cut(s)	730
BstMBI	GATC	1 cut(s)	760
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 416, 472, 534, 802
BstSCI	CCNGG	3 cut(s)	222, 306, 450
BstSFI	CTRYAG	1 cut(s)	599
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	709
BstXI	CCANNNNNNTGG	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	796, 849
BtgI	CCRYGG	1 cut(s)	337
BtrI	CACGTC	1 cut(s)	370
BtsIMutI	CAGTG	2 cut(s)	66, 608
CfoI	GCGC	1 cut(s)	569
Cfr10I	RCCGGY	5 cut(s)	235, 259, 349, 415, 770
Cfr13I	GGNCC	3 cut(s)	262, 310, 848
Csp6I	GTAC	1 cut(s)	619
CspAI	ACCGGT	2 cut(s)	235, 259
CviAII	CATG	5 cut(s)	122, 338, 407, 767, 811
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	4 cut(s)	43, 56, 477, 750
DinI	GGCGCC	1 cut(s)	568
DpnI	GATC	1 cut(s)	762
DpnII	GATC	1 cut(s)	760
Ecl136II	GAGCTC	1 cut(s)	701
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	3 cut(s)	440, 703, 867
Eco47I	GGWCC	2 cut(s)	262, 310
Eco53kI	GAGCTC	1 cut(s)	701
Eco88I	CYCGRG	1 cut(s)	385
EcoICRI	GAGCTC	1 cut(s)	701
EcoT14I	CCWWGG	1 cut(s)	337
EcoT38I	GRGCYC	3 cut(s)	440, 703, 867
EgeI	GGCGCC	1 cut(s)	568
EheI	GGCGCC	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	337
Esp3I	CGTCTC	1 cut(s)	730
FaeI	CATG	5 cut(s)	125, 341, 410, 770, 814
FaiI	YATR	5 cut(s)	123, 339, 408, 768, 812
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	5 cut(s)	121, 337, 406, 766, 810
FauI	CCCGC	1 cut(s)	480
Fnu4HI	GCNGC	1 cut(s)	38
FriOI	GRGCYC	3 cut(s)	440, 703, 867
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	568
GluI	GCNGC	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	570
HaeIII	GGCC	2 cut(s)	796, 849
HapII	CCGG	9 cut(s)	224, 236, 260, 308, 350, 416, 452, 546, 771
HhaI	GCGC	1 cut(s)	569
Hin1I	GRCGYC	1 cut(s)	567
Hin1II	CATG	5 cut(s)	125, 341, 410, 770, 814
Hin6I	GCGC	1 cut(s)	567
HinP1I	GCGC	1 cut(s)	567
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	496
HinfI	GANTC	2 cut(s)	388, 430
HpaII	CCGG	9 cut(s)	224, 236, 260, 308, 350, 416, 452, 546, 771
Hpy166II	GTNNAC	9 cut(s)	127, 229, 241, 265, 289, 313, 457, 523, 553
Hpy188I	TCNGA	3 cut(s)	435, 698, 760
Hpy188III	TCNNGA	1 cut(s)	790
Hpy8I	GTNNAC	9 cut(s)	127, 229, 241, 265, 289, 313, 457, 523, 553
HpyAV	CCTTC	1 cut(s)	842
HpyCH4III	ACNGT	2 cut(s)	70, 603
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	9 cut(s)	37, 155, 410, 511, 528, 537, 606, 711, 785
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 416, 472, 534, 802
HpyF3I	CTNAG	4 cut(s)	43, 56, 477, 750
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	1 cut(s)	567
Hsp92II	CATG	5 cut(s)	125, 341, 410, 770, 814
HspAI	GCGC	1 cut(s)	567
KasI	GGCGCC	1 cut(s)	566
Kzo9I	GATC	1 cut(s)	760
LmnI	GCTCC	2 cut(s)	584, 698
Lsp1109I	GCAGC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	1 cut(s)	762
MboI	GATC	1 cut(s)	760
MboII	GAAGA	2 cut(s)	41, 709
MhlI	GDGCHC	3 cut(s)	440, 703, 867
MluCI	AATT	1 cut(s)	84
Mly113I	GGCGCC	1 cut(s)	567
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	4 cut(s)	272, 296, 320, 422
MroXI	GAANNNNTTC	2 cut(s)	485, 806
MslI	CAYNNNNRTG	2 cut(s)	120, 336
MspI	CCGG	9 cut(s)	224, 236, 260, 308, 350, 416, 452, 546, 771
MspR9I	CCNGG	3 cut(s)	224, 308, 452
MwoI	GCNNNNNNNGC	5 cut(s)	152, 416, 472, 534, 802
NarI	GGCGCC	1 cut(s)	567
NciI	CCSGG	3 cut(s)	224, 308, 452
NcoI	CCATGG	1 cut(s)	337
NdeII	GATC	1 cut(s)	760
NlaIII	CATG	5 cut(s)	125, 341, 410, 770, 814
NlaIV	GGNNCC	1 cut(s)	568
NmuCI	GTSAC	1 cut(s)	389
PdmI	GAANNNNTTC	2 cut(s)	485, 806
PfeI	GAWTC	1 cut(s)	430
PinAI	ACCGGT	2 cut(s)	235, 259
PkrI	GCNGC	1 cut(s)	39
PleI	GAGTC	1 cut(s)	396
PluTI	GGCGCC	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	703
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	3 cut(s)	262, 310, 848
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
RseI	CAYNNNNRTG	2 cut(s)	120, 336
SacI	GAGCTC	1 cut(s)	703
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	1 cut(s)	760
Sau96I	GGNCC	3 cut(s)	262, 310, 848
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	3 cut(s)	224, 308, 452
SduI	GDGCHC	3 cut(s)	440, 703, 867
SfcI	CTRYAG	1 cut(s)	599
SfoI	GGCGCC	1 cut(s)	568
SinI	GGWCC	2 cut(s)	262, 310
SmiMI	CAYNNNNRTG	2 cut(s)	120, 336
SmlI	CTYRAG	1 cut(s)	790
SmoI	CTYRAG	1 cut(s)	790
Sse9I	AATT	1 cut(s)	84
SsiI	CCGC	3 cut(s)	464, 473, 506
SspDI	GGCGCC	1 cut(s)	566
SspMI	CTAG	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	703
StyD4I	CCNGG	3 cut(s)	222, 306, 450
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	2 cut(s)	70, 603
TaiI	ACGT	1 cut(s)	372
TasI	AATT	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	430
TscAI	CASTG	2 cut(s)	73, 608
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	2 cut(s)	655, 799
TspRI	CASTG	2 cut(s)	73, 608
VpaK11BI	GGWCC	2 cut(s)	262, 310
XcmI	CCANNNNNNNNNTGG	2 cut(s)	335, 622
XmnI	GAANNNNTTC	2 cut(s)	485, 806
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.