Rmu_sc0001665.1_g000026

Pistil-specific extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001665.1
OG0012982
Physical Location & Seq
Reverse (-)
127114 .. 128017
904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001665.1_g000026.1.cds

Sequence Viewer

Length: 816 bp
atgggttttgcaaaagctttagtttttgttcagctctctgttctcctactaaacaccttcactgttcttgctcagctctcagccattgaagctcaggcaccggttccgtcgcgccatcatggttactatgcacacccaatagcctcccctgcccaccctcccactcacggccaccaccaccaccaccccaaacctcacccacaccctccaaccgcttccccggtccaccctccggctcacgctcctgtccaccctcccactcaccaccaccatgctcacccaccttcccacatgccggctcactctccctaccaccacgctcccgttcagcccccgagccaccctcccactcaccacgcgccaccggctcactcccctgccccggttcaccctcctacctaccctcccaagaagcccttcccacgtagcttcgtggccgttcaaggcgtcgtctactgcaagtcgtgcaagtactccggcgtcgacactctcctcaacgccactgccattgccggtgctaccgtgaagctccagtgcaacaacaccaagtacccgcttgtcgtgaagggcacgactgacaagcacggctacttcttcatcacagctcccaagaccatcacaacctacggtgcccacaagtgcaaggcctcgctagtctccgctccgaccaccgcgtgttccaagatcaccgacttccacggcggacttacgggcgccgttctgaggccgtccaagccgttcctgtcggagaagaagctccccttccttctgtacaccgtcggtccgttcgccttcgagtccaaatgcccccattga

Protein Analysis

271

Amino Acids

29.19

Weight (kDa)

9.68

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012982)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34700
fragaria_vesca FvH4_3g09040
malus_domestica MD05G1338000.v1.1 MD10G1293100.v1.1
prunus_persica Prupe.4G048800_v2.0.a1
pyrus_communis pycom05g28950 pycom10g24510 pycom14g04310
rosa_chinensis RchiOBHm_Chr5g0008631
rosa_laevigata RLG00000031588
rosa_multiflora Rmu_sc0001665.1_g000026
rosa_roxburghii Rroxscaffold_1G00067920
rosa_rugosa Rorug04G0437500
rosa_samantha Rh5AG066000 Rh5BG063400 Rh5CG073600 Rh5DG062800
rosa_wichuraiana Rw5G006290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 97, 629, 713
AccBSI CCGCTC 1 cut(s) 662
AccI GTMKAC 2 cut(s) 453, 483
AccII CGCG 3 cut(s) 112, 359, 674
AciI CCGC 5 cut(s) 213, 554, 660, 672, 702
AcoI YGGCCR 2 cut(s) 169, 435
AcyI GRCGYC 3 cut(s) 447, 480, 714
AdeI CACNNNGTG 1 cut(s) 675
AfaI GTAC 3 cut(s) 473, 551, 773
AfiI CCNNNNNNNGG 5 cut(s) 167, 232, 295, 382, 723
AgeI ACCGGT 1 cut(s) 100
AgsI TTSAA 2 cut(s) 89, 443
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 8 cut(s) 17, 34, 76, 92, 429, 529, 605, 757
AluI AGCT 8 cut(s) 17, 34, 76, 92, 429, 529, 605, 757
Alw26I GTCTC 1 cut(s) 661
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 4 cut(s) 169, 435, 645, 725
AsiGI ACCGGT 1 cut(s) 100
Asp700I GAANNNNTTC 1 cut(s) 416
AspLEI GCGC 3 cut(s) 114, 361, 716
AspS9I GGNCC 2 cut(s) 223, 782
AsuC2I CCSGG 2 cut(s) 221, 383
AsuHPI GGTGA 6 cut(s) 188, 254, 269, 344, 380, 679
AvaI CYCGRG 1 cut(s) 334
AvaII GGWCC 2 cut(s) 223, 782
BaeGI GKGCMC 2 cut(s) 572, 634
BanI GGYRCC 3 cut(s) 97, 629, 713
BccI CCATC 2 cut(s) 123, 623
BceAI ACGGC 7 cut(s) 184, 422, 601, 701, 712, 715, 721
BcnI CCSGG 2 cut(s) 221, 383
BcoDI GTCTC 1 cut(s) 661
BfaI CTAG 1 cut(s) 653
BfoI RGCGCY 1 cut(s) 717
BlpI GCTNAGC 1 cut(s) 72
BmcAI AGTACT 1 cut(s) 473
Bme1390I CCNGG 2 cut(s) 221, 383
Bme18I GGWCC 2 cut(s) 223, 782
BmeT110I CYCGRG 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 223, 782
BmiI GGNNCC 4 cut(s) 99, 105, 631, 715
BmrFI CCNGG 2 cut(s) 221, 383
BplI GAGNNNNNCTC 2 cut(s) 328, 360
BpmI CTGGAG 1 cut(s) 515
Bpu10I CCTNAGC 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 72
BpuMI CCSGG 2 cut(s) 221, 383
BsaAI YACGTR 1 cut(s) 425
BsaHI GRCGYC 3 cut(s) 447, 480, 714
BsaJI CCNNGG 3 cut(s) 219, 381, 697
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
Bsc4I CCNNNNNNNGG 5 cut(s) 167, 232, 295, 382, 723
Bse118I RCCGGY 4 cut(s) 100, 295, 364, 512
Bse1I ACTGG 1 cut(s) 532
Bse3DI GCAATG 1 cut(s) 507
BseDI CCNNGG 3 cut(s) 219, 381, 697
BseLI CCNNNNNNNGG 5 cut(s) 167, 232, 295, 382, 723
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 4 cut(s) 86, 93, 107, 713
BseNI ACTGG 1 cut(s) 532
BseRI GAGGAG 1 cut(s) 482
BseSI GKGCMC 2 cut(s) 572, 634
Bsh1236I CGCG 3 cut(s) 112, 359, 674
BshFI GGCC 4 cut(s) 171, 437, 647, 727
BshNI GGYRCC 3 cut(s) 97, 629, 713
BshTI ACCGGT 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 334
BsiSI CCGG 8 cut(s) 101, 221, 233, 296, 365, 383, 477, 513
BslI CCNNNNNNNGG 5 cut(s) 167, 232, 295, 382, 723
BsmAI GTCTC 1 cut(s) 661
BsnI GGCC 4 cut(s) 171, 437, 647, 727
BsoBI CYCGRG 1 cut(s) 334
Bsp1286I GDGCHC 2 cut(s) 572, 634
Bsp1407I TGTACA 1 cut(s) 771
Bsp143I GATC 1 cut(s) 684
Bsp1720I GCTNAGC 1 cut(s) 72
BspACI CCGC 5 cut(s) 213, 554, 660, 672, 702
BspANI GGCC 4 cut(s) 171, 437, 647, 727
BspCNI CTCAG 4 cut(s) 85, 92, 106, 714
BspFNI CGCG 3 cut(s) 112, 359, 674
BspLI GGNNCC 4 cut(s) 99, 105, 631, 715
BspT107I GGYRCC 3 cut(s) 97, 629, 713
BsrBI CCGCTC 1 cut(s) 662
BsrDI GCAATG 1 cut(s) 507
BsrFI RCCGGY 4 cut(s) 100, 295, 364, 512
BsrGI TGTACA 1 cut(s) 771
BsrI ACTGG 1 cut(s) 532
BssAI RCCGGY 4 cut(s) 100, 295, 364, 512
BssECI CCNNGG 3 cut(s) 219, 381, 697
BssMI GATC 1 cut(s) 684
BssNI GRCGYC 3 cut(s) 447, 480, 714
Bst4CI ACNGT 4 cut(s) 64, 523, 629, 778
BstACI GRCGYC 3 cut(s) 447, 480, 714
BstAPI GCANNNNNTGC 1 cut(s) 465
BstAUI TGTACA 1 cut(s) 771
BstBAI YACGTR 1 cut(s) 425
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 4 cut(s) 72, 79, 93, 722
BstDSI CCRYGG 1 cut(s) 697
BstFNI CGCG 3 cut(s) 112, 359, 674
BstH2I RGCGCY 1 cut(s) 717
BstHHI GCGC 3 cut(s) 114, 361, 716
BstKTI GATC 1 cut(s) 687
BstMAI GTCTC 1 cut(s) 661
BstMBI GATC 1 cut(s) 684
BstMWI GCNNNNNNNGC 5 cut(s) 89, 149, 365, 465, 733
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 2 cut(s) 219, 381
BstSLI GKGCMC 2 cut(s) 572, 634
BstUI CGCG 3 cut(s) 112, 359, 674
BsuRI GGCC 4 cut(s) 171, 437, 647, 727
BtgI CCRYGG 1 cut(s) 697
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 3 cut(s) 60, 501, 539
Cac8I GCNNGC 1 cut(s) 297
CfoI GCGC 3 cut(s) 114, 361, 716
Cfr10I RCCGGY 4 cut(s) 100, 295, 364, 512
Cfr13I GGNCC 2 cut(s) 223, 782
CpoI CGGWCCG 1 cut(s) 782
CseI GACGC 2 cut(s) 436, 469
Csp6I GTAC 3 cut(s) 472, 550, 772
CspAI ACCGGT 1 cut(s) 100
CspCI CAANNNNNGTGG 2 cut(s) 490, 525
CspI CGGWCCG 1 cut(s) 782
CviAII CATG 3 cut(s) 119, 272, 292
CviQI GTAC 3 cut(s) 472, 550, 772
DdeI CTNAG 4 cut(s) 72, 79, 93, 722
DinI GGCGCC 1 cut(s) 715
DpnI GATC 1 cut(s) 686
DpnII GATC 1 cut(s) 684
DraIII CACNNNGTG 1 cut(s) 675
EaeI YGGCCR 2 cut(s) 169, 435
EciI GGCGGA 1 cut(s) 717
Eco147I AGGCCT 1 cut(s) 647
Eco47I GGWCC 2 cut(s) 223, 782
Eco88I CYCGRG 1 cut(s) 334
EgeI GGCGCC 1 cut(s) 715
EheI GGCGCC 1 cut(s) 715
FaeI CATG 3 cut(s) 122, 275, 295
FaiI YATR 4 cut(s) 120, 129, 273, 293
FalI AAGNNNNNCTT 4 cut(s) 401, 433, 746, 778
FatI CATG 3 cut(s) 118, 271, 291
FauI CCCGC 1 cut(s) 561
FblI GTMKAC 2 cut(s) 453, 483
FspBI CTAG 1 cut(s) 653
GlaI GCGC 3 cut(s) 113, 360, 715
GsuI CTGGAG 1 cut(s) 515
HaeII RGCGCY 1 cut(s) 717
HaeIII GGCC 4 cut(s) 171, 437, 647, 727
HapII CCGG 8 cut(s) 101, 221, 233, 296, 365, 383, 477, 513
HgaI GACGC 2 cut(s) 436, 469
HhaI GCGC 3 cut(s) 114, 361, 716
Hin1I GRCGYC 3 cut(s) 447, 480, 714
Hin1II CATG 3 cut(s) 122, 275, 295
Hin6I GCGC 3 cut(s) 112, 359, 714
HinP1I GCGC 3 cut(s) 112, 359, 714
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 1 cut(s) 797
HpaII CCGG 8 cut(s) 101, 221, 233, 296, 365, 383, 477, 513
HphI GGTGA 6 cut(s) 188, 254, 269, 344, 380, 679
Hpy166II GTNNAC 6 cut(s) 226, 250, 388, 454, 484, 774
Hpy188I TCNGA 3 cut(s) 666, 723, 748
Hpy188III TCNNGA 1 cut(s) 562
Hpy8I GTNNAC 6 cut(s) 226, 250, 388, 454, 484, 774
Hpy99I CGWCG 4 cut(s) 112, 452, 485, 782
HpyAV CCTTC 7 cut(s) 67, 294, 427, 559, 772, 776, 802
HpyCH4III ACNGT 4 cut(s) 64, 523, 629, 778
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 6 cut(s) 11, 131, 459, 468, 537, 642
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 149, 365, 465, 733
HpyF3I CTNAG 4 cut(s) 72, 79, 93, 722
HpySE526I ACGT 1 cut(s) 424
Hsp92I GRCGYC 3 cut(s) 447, 480, 714
Hsp92II CATG 3 cut(s) 122, 275, 295
HspAI GCGC 3 cut(s) 112, 359, 714
KasI GGCGCC 1 cut(s) 713
KroI GCCGGC 1 cut(s) 295
KroNI GCCGGC 1 cut(s) 297
Kzo9I GATC 1 cut(s) 684
LmnI GCTCC 6 cut(s) 247, 325, 534, 610, 667, 762
MaeI CTAG 1 cut(s) 653
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 1 cut(s) 122
MalI GATC 1 cut(s) 686
MbiI CCGCTC 1 cut(s) 662
MboI GATC 1 cut(s) 684
MboII GAAGA 2 cut(s) 586, 763
MhlI GDGCHC 2 cut(s) 572, 634
Mly113I GGCGCC 1 cut(s) 714
MlyI GAGTC 1 cut(s) 806
MmeI TCCRAC 3 cut(s) 233, 689, 726
MroNI GCCGGC 1 cut(s) 295
MroXI GAANNNNTTC 1 cut(s) 416
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 8 cut(s) 101, 221, 233, 296, 365, 383, 477, 513
MspR9I CCNGG 2 cut(s) 221, 383
MvnI CGCG 3 cut(s) 112, 359, 674
MwoI GCNNNNNNNGC 5 cut(s) 89, 149, 365, 465, 733
NaeI GCCGGC 1 cut(s) 297
NarI GGCGCC 1 cut(s) 714
NciI CCSGG 2 cut(s) 221, 383
NdeII GATC 1 cut(s) 684
NgoMIV GCCGGC 1 cut(s) 295
NlaIII CATG 3 cut(s) 122, 275, 295
NlaIV GGNNCC 4 cut(s) 99, 105, 631, 715
NspI RCATGY 1 cut(s) 295
PceI AGGCCT 1 cut(s) 647
PdiI GCCGGC 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 416
PinAI ACCGGT 1 cut(s) 100
PleI GAGTC 1 cut(s) 805
PluTI GGCGCC 1 cut(s) 717
PpsI GAGTC 1 cut(s) 805
Ppu21I YACGTR 1 cut(s) 425
PspN4I GGNNCC 4 cut(s) 99, 105, 631, 715
PspPI GGNCC 2 cut(s) 223, 782
RsaI GTAC 3 cut(s) 473, 551, 773
RsaNI GTAC 3 cut(s) 472, 550, 772
RseI CAYNNNNRTG 1 cut(s) 270
Rsr2I CGGWCCG 1 cut(s) 782
RsrII CGGWCCG 1 cut(s) 782
SalI GTCGAC 1 cut(s) 482
Sau3AI GATC 1 cut(s) 684
Sau96I GGNCC 2 cut(s) 223, 782
ScaI AGTACT 1 cut(s) 473
SchI GAGTC 1 cut(s) 806
ScrFI CCNGG 2 cut(s) 221, 383
SduI GDGCHC 2 cut(s) 572, 634
SfoI GGCGCC 1 cut(s) 715
SinI GGWCC 2 cut(s) 223, 782
SmiMI CAYNNNNRTG 1 cut(s) 270
SseBI AGGCCT 1 cut(s) 647
SsiI CCGC 5 cut(s) 213, 554, 660, 672, 702
SspDI GGCGCC 1 cut(s) 713
SspMI CTAG 1 cut(s) 653
StuI AGGCCT 1 cut(s) 647
StyD4I CCNGG 2 cut(s) 219, 381
TaaI ACNGT 4 cut(s) 64, 523, 629, 778
TaiI ACGT 1 cut(s) 427
TaqI TCGA 2 cut(s) 483, 795
TaqII GACCGA 1 cut(s) 770
TatI WGTACW 2 cut(s) 471, 771
TscAI CASTG 3 cut(s) 67, 508, 539
TspDTI ATGAA 1 cut(s) 586
TspGWI ACGGA 2 cut(s) 96, 774
TspRI CASTG 3 cut(s) 67, 508, 539
VpaK11BI GGWCC 2 cut(s) 223, 782
XceI RCATGY 1 cut(s) 295
XmiI GTMKAC 2 cut(s) 453, 483
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 1 cut(s) 653
ZrmI AGTACT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.