Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012982

Physical Location & Seq

Genomic Coordinates Forward (+)

29507176 .. 29509583

Gene Structure 2408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGTTCTCCTGCTGTGTTTGTGCAGCTCTCAGTCCTCCTACTGAGCTGCTTCACTGTCTTCGGTAATGTAATTACCACTTTACCCGCCAGTCCTCCAACCCACCCACCGGCTCACCCACCCACTCACGGCCAGCACCACCGCCAACCCCACCCACACCCACCCACTGCCTCCCCAGTTCACCCACCAGCCCACTCTCCGGTGCACCCACCAGCCCACTCTCCGGTGCACCCACCAGCCCACTCTCCGGTTCACCCACCAAGCCCCCACCACCACGACGGCCACCCACCGGTTCACCCTCCTATGTACCCACCTAAGAAACCTTTCCCAAGGAGCTTTGTAGCGGTTCAAGGCGTCGTTTACTGCAAATCTTGCAAATACTCCGGCGTCGACACCCTTAACGGCGCCAAGCCAGTTCTTGGTGCTACAGTAAAGCTACAGTGCAACAACAGAAAGTTCCCATTGGTTGTGAAGGAAACCACAGATAAAAATGGCTACTTTTTTATCACGGCACCCAAGACCATCACCACCTTTGGAGCTCACAAGTGCAAGGTGTCACTCGTCTCCTCTCCCTCCGCCGCCTGCTCCAAGCCGTCCGATCTGCATGGTGGACTGAGCGGTGCTCTGCTGAAGCCTGCGAAGCCATTTATGTCCCAGAAGCTCCCATTCCTTCTCTACAATGTCGGTCCATTCGCCTTTGAGCCCACATGCGTCGCCGGAGGGACGACGCCGGTGGAGTCAGGTCCAAAGAGGGCAGCACGTAGGAGAGTGCCTCGATGTGCCGAGATGGGGTTAGGGAATGTAGTGCCTGAGGAGTGCGGAGCAGTGTCGGAGTCGATGGGGCTGTCGGAGTGTTATCCTCAGTGTGTGTTTTTGGATGAGAGGGGAGGTGAAGAGAATGGAGGAGAGGGAGGTGTTTGGGAGGCTCGGGAGGGAGAAGAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0016020 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:0080050 GO:1901700 GO:2000026 GO:2000033 GO:2000034 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

316

Amino Acids

33.54

Weight (kDa)

8.85

Isoelectric Point (pI)

60.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pollen_Ole_e_1	PF01190	116 - 207	1e-24	Pollen protein Ole e 1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34700
fragaria_vesca	FvH4_3g09040
malus_domestica	MD05G1338000.v1.1 MD10G1293100.v1.1
prunus_persica	Prupe.4G048800_v2.0.a1
pyrus_communis	pycom05g28950 pycom10g24510 pycom14g04310
rosa_chinensis	RchiOBHm_Chr5g0008631
rosa_laevigata	RLG00000031588
rosa_multiflora	Rmu_sc0001665.1_g000026
rosa_roxburghii	Rroxscaffold_1G00067920
rosa_rugosa	Rorug04G0437500
rosa_samantha	Rh5AG066000 Rh5BG063400 Rh5CG073600 Rh5DG062800
rosa_wichuraiana	Rw5G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	404, 511
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	618
AccI	GTMKAC	1 cut(s)	390
AciI	CCGC	7 cut(s)	87, 142, 344, 576, 579, 618, 819
AcoI	YGGCCR	2 cut(s)	130, 280
AcuI	CTGAAG	1 cut(s)	650
AcyI	GRCGYC	4 cut(s)	354, 387, 405, 728
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	8 cut(s)	109, 128, 199, 223, 247, 289, 419, 789
AgeI	ACCGGT	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	350
AluBI	AGCT	6 cut(s)	28, 48, 336, 436, 539, 661
AluI	AGCT	6 cut(s)	28, 48, 336, 436, 539, 661
Alw21I	GWGCWC	4 cut(s)	207, 231, 541, 625
Alw26I	GTCTC	1 cut(s)	568
Alw44I	GTGCAC	2 cut(s)	203, 227
Ama87I	CYCGRG	1 cut(s)	927
AoxI	GGCC	2 cut(s)	130, 280
ApaLI	GTGCAC	2 cut(s)	203, 227
ApeKI	GCWGC	3 cut(s)	25, 48, 755
AsiGI	ACCGGT	1 cut(s)	289
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	2 cut(s)	686, 743
AsuHPI	GGTGA	6 cut(s)	107, 173, 245, 287, 517, 902
AvaI	CYCGRG	1 cut(s)	927
AvaII	GGWCC	2 cut(s)	686, 743
AxyI	CCTNAGG	1 cut(s)	810
BaeGI	GKGCMC	2 cut(s)	207, 231
BanI	GGYRCC	2 cut(s)	404, 511
BanII	GRGCYC	2 cut(s)	541, 705
BbsI	GAAGAC	1 cut(s)	52
Bbv12I	GWGCWC	4 cut(s)	207, 231, 541, 625
BbvI	GCAGC	3 cut(s)	35, 37, 767
BccI	CCATC	3 cut(s)	530, 781, 832
BceAI	ACGGC	5 cut(s)	145, 295, 418, 525, 577
BcoDI	GTCTC	1 cut(s)	568
BfmI	CTRYAG	2 cut(s)	426, 437
BfoI	RGCGCY	1 cut(s)	408
BisI	GCNGC	4 cut(s)	26, 49, 579, 756
BlsI	GCNGC	4 cut(s)	27, 50, 580, 757
Bme18I	GGWCC	2 cut(s)	686, 743
BmeT110I	CYCGRG	1 cut(s)	927
BmgT120I	GGNCC	2 cut(s)	686, 743
BmiI	GGNNCC	2 cut(s)	406, 513
BmrI	ACTGGG	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	52
BplI	GAGNNNNNCTC	4 cut(s)	607, 639, 757, 789
BsaAI	YACGTR	1 cut(s)	761
BsaHI	GRCGYC	4 cut(s)	354, 387, 405, 728
BsaJI	CCNNGG	1 cut(s)	329
BsaWI	WCCGGW	4 cut(s)	199, 223, 247, 289
Bsc4I	CCNNNNNNNGG	8 cut(s)	109, 128, 199, 223, 247, 289, 419, 789
Bse118I	RCCGGY	3 cut(s)	109, 289, 730
Bse1I	ACTGG	3 cut(s)	90, 176, 413
Bse21I	CCTNAGG	1 cut(s)	810
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	883
BseLI	CCNNNNNNNGG	8 cut(s)	109, 128, 199, 223, 247, 289, 419, 789
BseMII	CTCAG	5 cut(s)	35, 45, 605, 801, 875
BseNI	ACTGG	3 cut(s)	90, 176, 413
BseRI	GAGGAG	3 cut(s)	556, 827, 918
BseSI	GKGCMC	2 cut(s)	207, 231
BseXI	GCAGC	3 cut(s)	35, 37, 767
BsgI	GTGCAG	1 cut(s)	44
BshFI	GGCC	2 cut(s)	132, 282
BshNI	GGYRCC	2 cut(s)	404, 511
BshTI	ACCGGT	1 cut(s)	289
BsiHKAI	GWGCWC	4 cut(s)	207, 231, 541, 625
BsiHKCI	CYCGRG	1 cut(s)	927
BsiSI	CCGG	8 cut(s)	110, 200, 224, 248, 290, 384, 717, 731
BslFI	GGGAC	2 cut(s)	637, 736
BslI	CCNNNNNNNGG	8 cut(s)	109, 128, 199, 223, 247, 289, 419, 789
BsmAI	GTCTC	1 cut(s)	568
BsmBI	CGTCTC	1 cut(s)	568
BsmFI	GGGAC	2 cut(s)	637, 736
BsnI	GGCC	2 cut(s)	132, 282
BsoBI	CYCGRG	1 cut(s)	927
Bsp1286I	GDGCHC	5 cut(s)	207, 231, 541, 625, 705
Bsp143I	GATC	1 cut(s)	598
BspACI	CCGC	7 cut(s)	87, 142, 344, 576, 579, 618, 819
BspANI	GGCC	2 cut(s)	132, 282
BspCNI	CTCAG	5 cut(s)	36, 44, 606, 802, 874
BspLI	GGNNCC	2 cut(s)	406, 513
BspT107I	GGYRCC	2 cut(s)	404, 511
BsrBI	CCGCTC	1 cut(s)	618
BsrFI	RCCGGY	3 cut(s)	109, 289, 730
BsrI	ACTGG	3 cut(s)	90, 176, 413
BssAI	RCCGGY	3 cut(s)	109, 289, 730
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	1 cut(s)	598
BssNI	GRCGYC	4 cut(s)	354, 387, 405, 728
BssT1I	CCWWGG	1 cut(s)	329
Bst4CI	ACNGT	3 cut(s)	58, 430, 441
Bst6I	CTCTTC	2 cut(s)	888, 933
BstACI	GRCGYC	4 cut(s)	354, 387, 405, 728
BstAPI	GCANNNNNTGC	1 cut(s)	372
BstBAI	YACGTR	1 cut(s)	761
BstC8I	GCNNGC	3 cut(s)	134, 583, 636
BstDEI	CTNAG	6 cut(s)	31, 44, 315, 614, 810, 861
BstF5I	GGATG	1 cut(s)	883
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	1 cut(s)	601
BstMAI	GTCTC	1 cut(s)	568
BstMBI	GATC	1 cut(s)	598
BstMWI	GCNNNNNNNGC	2 cut(s)	372, 640
BstNSI	RCATGY	1 cut(s)	711
BstSFI	CTRYAG	2 cut(s)	426, 437
BstSLI	GKGCMC	2 cut(s)	207, 231
BstV1I	GCAGC	3 cut(s)	35, 37, 767
BstV2I	GAAGAC	1 cut(s)	52
Bsu36I	CCTNAGG	1 cut(s)	810
BsuRI	GGCC	2 cut(s)	132, 282
BtsCI	GGATG	1 cut(s)	883
BtsI	GCAGTG	2 cut(s)	165, 831
BtsIMutI	CAGTG	5 cut(s)	54, 165, 446, 831, 869
Cac8I	GCNNGC	3 cut(s)	134, 583, 636
CfoI	GCGC	1 cut(s)	407
Cfr10I	RCCGGY	3 cut(s)	109, 289, 730
Cfr13I	GGNCC	2 cut(s)	686, 743
CseI	GACGC	4 cut(s)	343, 376, 700, 736
Csp6I	GTAC	1 cut(s)	307
CspAI	ACCGGT	1 cut(s)	289
CviAII	CATG	2 cut(s)	605, 708
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	6 cut(s)	31, 44, 315, 614, 810, 861
DinI	GGCGCC	1 cut(s)	406
DpnI	GATC	1 cut(s)	600
DpnII	GATC	1 cut(s)	598
EaeI	YGGCCR	2 cut(s)	130, 280
Eam1104I	CTCTTC	2 cut(s)	888, 933
EarI	CTCTTC	2 cut(s)	888, 933
EciI	GGCGGA	1 cut(s)	565
Ecl136II	GAGCTC	1 cut(s)	539
Eco130I	CCWWGG	1 cut(s)	329
Eco24I	GRGCYC	2 cut(s)	541, 705
Eco47I	GGWCC	2 cut(s)	686, 743
Eco53kI	GAGCTC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	650
Eco81I	CCTNAGG	1 cut(s)	810
Eco88I	CYCGRG	1 cut(s)	927
EcoICRI	GAGCTC	1 cut(s)	539
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	2 cut(s)	541, 705
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	568
FaeI	CATG	2 cut(s)	608, 711
FaiI	YATR	4 cut(s)	305, 606, 650, 709
FaqI	GGGAC	2 cut(s)	637, 736
FatI	CATG	2 cut(s)	604, 707
FauI	CCCGC	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	4 cut(s)	26, 49, 579, 756
FokI	GGATG	1 cut(s)	890
FriOI	GRGCYC	2 cut(s)	541, 705
Fsp4HI	GCNGC	4 cut(s)	26, 49, 579, 756
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	4 cut(s)	26, 49, 579, 756
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	132, 282
HapII	CCGG	8 cut(s)	110, 200, 224, 248, 290, 384, 717, 731
HgaI	GACGC	4 cut(s)	343, 376, 700, 736
HhaI	GCGC	1 cut(s)	407
Hin1I	GRCGYC	4 cut(s)	354, 387, 405, 728
Hin1II	CATG	2 cut(s)	608, 711
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	2 cut(s)	737, 833
HpaII	CCGG	8 cut(s)	110, 200, 224, 248, 290, 384, 717, 731
HphI	GGTGA	6 cut(s)	107, 173, 245, 287, 517, 902
Hpy166II	GTNNAC	8 cut(s)	181, 205, 229, 253, 295, 361, 391, 611
Hpy188I	TCNGA	3 cut(s)	598, 832, 850
Hpy188III	TCNNGA	1 cut(s)	929
Hpy8I	GTNNAC	8 cut(s)	181, 205, 229, 253, 295, 361, 391, 611
Hpy99I	CGWCG	5 cut(s)	281, 359, 392, 716, 730
HpyAV	CCTTC	2 cut(s)	466, 680
HpyCH4III	ACNGT	3 cut(s)	58, 430, 441
HpyCH4IV	ACGT	1 cut(s)	760
HpyCH4V	TGCA	8 cut(s)	25, 205, 229, 366, 375, 444, 549, 604
HpyF10VI	GCNNNNNNNGC	2 cut(s)	372, 640
HpyF3I	CTNAG	6 cut(s)	31, 44, 315, 614, 810, 861
HpySE526I	ACGT	1 cut(s)	760
Hsp92I	GRCGYC	4 cut(s)	354, 387, 405, 728
Hsp92II	CATG	2 cut(s)	608, 711
HspAI	GCGC	1 cut(s)	405
KasI	GGCGCC	1 cut(s)	404
Kzo9I	GATC	1 cut(s)	598
LmnI	GCTCC	5 cut(s)	333, 536, 590, 666, 821
Lsp1109I	GCAGC	3 cut(s)	35, 37, 767
MaeII	ACGT	1 cut(s)	760
MaeIII	GTNAC	1 cut(s)	555
MalI	GATC	1 cut(s)	600
MbiI	CCGCTC	1 cut(s)	618
MboI	GATC	1 cut(s)	598
MboII	GAAGA	2 cut(s)	52, 905
MhlI	GDGCHC	5 cut(s)	207, 231, 541, 625, 705
MluCI	AATT	1 cut(s)	72
Mly113I	GGCGCC	1 cut(s)	405
MlyI	GAGTC	2 cut(s)	746, 842
MmeI	TCCRAC	3 cut(s)	122, 810, 828
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	1 cut(s)	399
MspI	CCGG	8 cut(s)	110, 200, 224, 248, 290, 384, 717, 731
MwoI	GCNNNNNNNGC	2 cut(s)	372, 640
NarI	GGCGCC	1 cut(s)	405
NdeII	GATC	1 cut(s)	598
NlaIII	CATG	2 cut(s)	608, 711
NlaIV	GGNNCC	2 cut(s)	406, 513
NmeAIII	GCCGAG	1 cut(s)	808
NmuCI	GTSAC	1 cut(s)	555
NspI	RCATGY	1 cut(s)	711
PdmI	GAANNNNTTC	1 cut(s)	323
PflMI	CCANNNNNTGG	1 cut(s)	419
PinAI	ACCGGT	1 cut(s)	289
PkrI	GCNGC	4 cut(s)	27, 50, 580, 757
PleI	GAGTC	2 cut(s)	745, 841
PluTI	GGCGCC	1 cut(s)	408
PpsI	GAGTC	2 cut(s)	745, 841
Ppu21I	YACGTR	1 cut(s)	761
Psp124BI	GAGCTC	1 cut(s)	541
PspN4I	GGNNCC	2 cut(s)	406, 513
PspPI	GGNCC	2 cut(s)	686, 743
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SacI	GAGCTC	1 cut(s)	541
SalI	GTCGAC	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	4 cut(s)	26, 49, 579, 756
Sau3AI	GATC	1 cut(s)	598
Sau96I	GGNCC	2 cut(s)	686, 743
SchI	GAGTC	2 cut(s)	746, 842
SduI	GDGCHC	5 cut(s)	207, 231, 541, 625, 705
SfcI	CTRYAG	2 cut(s)	426, 437
SfoI	GGCGCC	1 cut(s)	406
SgrAI	CRCCGGYG	1 cut(s)	730
SinI	GGWCC	2 cut(s)	686, 743
Sse9I	AATT	1 cut(s)	72
SsiI	CCGC	7 cut(s)	87, 142, 344, 576, 579, 618, 819
SspDI	GGCGCC	1 cut(s)	404
SstI	GAGCTC	1 cut(s)	541
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	3 cut(s)	58, 430, 441
TaiI	ACGT	1 cut(s)	763
TaqI	TCGA	3 cut(s)	390, 775, 836
TaqII	GACCGA	1 cut(s)	674
TasI	AATT	1 cut(s)	72
TauI	GCSGC	1 cut(s)	581
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	5 cut(s)	61, 172, 446, 831, 869
TseFI	GTSAC	1 cut(s)	555
TseI	GCWGC	3 cut(s)	25, 48, 755
Tsp45I	GTSAC	1 cut(s)	555
TspRI	CASTG	5 cut(s)	61, 172, 446, 831, 869
Van91I	CCANNNNNTGG	1 cut(s)	419
VneI	GTGCAC	2 cut(s)	203, 227
VpaK11BI	GGWCC	2 cut(s)	686, 743
XceI	RCATGY	1 cut(s)	711
XmiI	GTMKAC	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.