Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012982

Physical Location & Seq

Genomic Coordinates Forward (+)

38137394 .. 38138893

Gene Structure 1500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1293100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGTTCTCCTGCAGTGTTTGTGCAGCTCTCAGTCCTCCTACTGAGCTGCTTCGCTGTCTTCGGTGATGTAATTACCACTTTACCCGCCATTCCTCCACACCACAGCATTCACTATTCTCACCCAGTAGCTTCCCCAACCCACCCACCGGCACACCCGCCTACTCACGGCCACCACCACCACCACCCACACCCACACCCACACCCACACCCTCCCACTCACTCTCCGGTCCACCCACCAGCTCACTCTCCGGTCCACCCACCAGCCCACTCTCCGGTCCACCCACCAGCCCACTCTCCGGTTCACCCACCAGCCCACTCTCCGGTTCACCCACCAGCCCACTCTCCGGTTCACCCACCAAACCCCCACCACCACCACCACGGCCACCCACCGGCCCACGCTCCCACTCACGTCCCGGTTCAGCCTCCGAGCCACCCTCCAACCCACCATGCACCAACTCCTCACCCTCCGGCTCACAGCCCGGTACACCCACCGGTTCACCCACCTATGTACCCACCTAAGAAGCCTTTCCCAAGGAGCTTTGTAGCGGTTCAAGGCGTCGTTTACTGCAAGTCTTGCAACTACTCCGGCGTCGACACCCTTAACGGCGCCAAGCCAGTTCTTGGTGCTACGGTAAAGCTCCAGTGTAACAACACGAAGTACCCATTGGTTGTGAAAAAAACCACGGATAAGAATGGCTACTTTTTTATCACGGCACCAAAGACCGTCACCACCTTTGGAGCTCACAAGTGCAAGGTGTCGCTCGTCTCAGCACCCTCCACCGCCTGCTCCAAGCCGTCCGATCTGCATGGTGGACTGAGCGGTGCACTCCTGAGGCCTGTGAAGCCATTTGTCTCCCAGAAGCTCCCATTCCTTCTCTACAATGTCGGTCCATTTGCCTTTGAGCCAAAATGTCCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0016020 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:0080050 GO:1901700 GO:2000026 GO:2000033 GO:2000034 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

308

Amino Acids

32.93

Weight (kDa)

9.66

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pollen_Ole_e_1	PF01190	184 - 275	2.8e-24	Pollen protein Ole e 1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34700
fragaria_vesca	FvH4_3g09040
malus_domestica	MD05G1338000.v1.1 MD10G1293100.v1.1
prunus_persica	Prupe.4G048800_v2.0.a1
pyrus_communis	pycom05g28950 pycom10g24510 pycom14g04310
rosa_chinensis	RchiOBHm_Chr5g0008631
rosa_laevigata	RLG00000031588
rosa_multiflora	Rmu_sc0001665.1_g000026
rosa_roxburghii	Rroxscaffold_1G00067920
rosa_rugosa	Rorug04G0437500
rosa_samantha	Rh5AG066000 Rh5BG063400 Rh5CG073600 Rh5DG062800
rosa_wichuraiana	Rw5G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	608, 715
AccB7I	CCANNNNNTGG	1 cut(s)	623
AccBSI	CCGCTC	1 cut(s)	822
AccI	GTMKAC	1 cut(s)	594
AciI	CCGC	5 cut(s)	87, 158, 548, 783, 822
AcoI	YGGCCR	2 cut(s)	169, 382
AcyI	GRCGYC	3 cut(s)	558, 591, 609
AfaI	GTAC	3 cut(s)	486, 512, 662
AfiI	CCNNNNNNNGG	8 cut(s)	148, 167, 274, 298, 322, 346, 391, 623
AgeI	ACCGGT	1 cut(s)	493
AgsI	TTSAA	1 cut(s)	554
AjiI	CACGTC	1 cut(s)	412
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AluBI	AGCT	8 cut(s)	28, 48, 131, 242, 540, 640, 743, 865
AluI	AGCT	8 cut(s)	28, 48, 131, 242, 540, 640, 743, 865
Alw21I	GWGCWC	2 cut(s)	745, 829
Alw26I	GTCTC	2 cut(s)	772, 859
Alw44I	GTGCAC	1 cut(s)	825
AoxI	GGCC	4 cut(s)	169, 382, 393, 836
ApaLI	GTGCAC	1 cut(s)	825
ApeKI	GCWGC	2 cut(s)	25, 48
AsiGI	ACCGGT	1 cut(s)	493
Asp700I	GAANNNNTTC	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	611
AspS9I	GGNCC	5 cut(s)	229, 253, 277, 394, 890
AsuC2I	CCSGG	2 cut(s)	416, 482
AsuHPI	GGTGA	8 cut(s)	77, 113, 296, 320, 344, 455, 491, 721
AvaII	GGWCC	4 cut(s)	229, 253, 277, 890
AxyI	CCTNAGG	1 cut(s)	833
BaeGI	GKGCMC	1 cut(s)	829
BaeI	ACNNNNGTAYC	2 cut(s)	494, 527
BanI	GGYRCC	2 cut(s)	608, 715
BanII	GRGCYC	1 cut(s)	745
BbsI	GAAGAC	1 cut(s)	52
Bbv12I	GWGCWC	2 cut(s)	745, 829
BbvI	GCAGC	2 cut(s)	35, 37
BceAI	ACGGC	5 cut(s)	184, 397, 622, 729, 781
BcnI	CCSGG	2 cut(s)	416, 482
BcoDI	GTCTC	2 cut(s)	772, 859
BfmI	CTRYAG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	612
BisI	GCNGC	2 cut(s)	26, 49
BlsI	GCNGC	2 cut(s)	27, 50
Bme1390I	CCNGG	2 cut(s)	416, 482
Bme18I	GGWCC	4 cut(s)	229, 253, 277, 890
BmgBI	CACGTC	1 cut(s)	412
BmgT120I	GGNCC	5 cut(s)	229, 253, 277, 394, 890
BmiI	GGNNCC	2 cut(s)	610, 717
BmrFI	CCNGG	2 cut(s)	416, 482
BmrI	ACTGGG	1 cut(s)	119
BmuI	ACTGGG	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	52
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
BpmI	CTGGAG	1 cut(s)	626
BpuMI	CCSGG	2 cut(s)	416, 482
BsaHI	GRCGYC	3 cut(s)	558, 591, 609
BsaJI	CCNNGG	3 cut(s)	379, 533, 684
BsaWI	WCCGGW	7 cut(s)	226, 250, 274, 298, 322, 346, 493
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	8 cut(s)	148, 167, 274, 298, 322, 346, 391, 623
Bse118I	RCCGGY	3 cut(s)	148, 391, 493
Bse1I	ACTGG	3 cut(s)	125, 617, 643
Bse21I	CCTNAGG	1 cut(s)	833
BseDI	CCNNGG	3 cut(s)	379, 533, 684
BseLI	CCNNNNNNNGG	8 cut(s)	148, 167, 274, 298, 322, 346, 391, 623
BseMII	CTCAG	5 cut(s)	35, 45, 783, 809, 824
BseNI	ACTGG	3 cut(s)	125, 617, 643
BseRI	GAGGAG	1 cut(s)	450
BseSI	GKGCMC	1 cut(s)	829
BseXI	GCAGC	2 cut(s)	35, 37
BsgI	GTGCAG	1 cut(s)	44
BshFI	GGCC	4 cut(s)	171, 384, 395, 838
BshNI	GGYRCC	2 cut(s)	608, 715
BshTI	ACCGGT	1 cut(s)	493
BsiHKAI	GWGCWC	2 cut(s)	745, 829
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	8 cut(s)	148, 167, 274, 298, 322, 346, 391, 623
BsmAI	GTCTC	2 cut(s)	772, 859
BsmBI	CGTCTC	1 cut(s)	772
BsmFI	GGGAC	1 cut(s)	398
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	4 cut(s)	171, 384, 395, 838
Bsp1286I	GDGCHC	2 cut(s)	745, 829
Bsp143I	GATC	1 cut(s)	802
BspACI	CCGC	5 cut(s)	87, 158, 548, 783, 822
BspANI	GGCC	4 cut(s)	171, 384, 395, 838
BspCNI	CTCAG	5 cut(s)	36, 44, 782, 810, 825
BspLI	GGNNCC	2 cut(s)	610, 717
BspMAI	CTGCAG	1 cut(s)	16
BspT107I	GGYRCC	2 cut(s)	608, 715
BsrBI	CCGCTC	1 cut(s)	822
BsrFI	RCCGGY	3 cut(s)	148, 391, 493
BsrI	ACTGG	3 cut(s)	125, 617, 643
BssAI	RCCGGY	3 cut(s)	148, 391, 493
BssECI	CCNNGG	3 cut(s)	379, 533, 684
BssMI	GATC	1 cut(s)	802
BssNI	GRCGYC	3 cut(s)	558, 591, 609
BssT1I	CCWWGG	1 cut(s)	533
Bst4CI	ACNGT	2 cut(s)	634, 727
BstACI	GRCGYC	3 cut(s)	558, 591, 609
BstAPI	GCANNNNNTGC	1 cut(s)	576
BstC8I	GCNNGC	1 cut(s)	787
BstDEI	CTNAG	6 cut(s)	31, 44, 519, 769, 818, 833
BstDSI	CCRYGG	2 cut(s)	379, 684
BstH2I	RGCGCY	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	611
BstKTI	GATC	1 cut(s)	805
BstMAI	GTCTC	2 cut(s)	772, 859
BstMBI	GATC	1 cut(s)	802
BstMWI	GCNNNNNNNGC	2 cut(s)	576, 844
BstSCI	CCNGG	2 cut(s)	414, 480
BstSFI	CTRYAG	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	829
BstV1I	GCAGC	2 cut(s)	35, 37
BstV2I	GAAGAC	1 cut(s)	52
Bsu36I	CCTNAGG	1 cut(s)	833
BsuRI	GGCC	4 cut(s)	171, 384, 395, 838
BtgI	CCRYGG	2 cut(s)	379, 684
BtrI	CACGTC	1 cut(s)	412
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	21, 650
Cac8I	GCNNGC	1 cut(s)	787
CfoI	GCGC	1 cut(s)	611
Cfr10I	RCCGGY	3 cut(s)	148, 391, 493
Cfr13I	GGNCC	5 cut(s)	229, 253, 277, 394, 890
CseI	GACGC	2 cut(s)	547, 580
Csp6I	GTAC	3 cut(s)	485, 511, 661
CspAI	ACCGGT	1 cut(s)	493
CviAII	CATG	2 cut(s)	449, 809
CviQI	GTAC	3 cut(s)	485, 511, 661
DdeI	CTNAG	6 cut(s)	31, 44, 519, 769, 818, 833
DinI	GGCGCC	1 cut(s)	610
DpnI	GATC	1 cut(s)	804
DpnII	GATC	1 cut(s)	802
EaeI	YGGCCR	2 cut(s)	169, 382
Ecl136II	GAGCTC	1 cut(s)	743
Eco130I	CCWWGG	1 cut(s)	533
Eco147I	AGGCCT	1 cut(s)	838
Eco24I	GRGCYC	1 cut(s)	745
Eco47I	GGWCC	4 cut(s)	229, 253, 277, 890
Eco53kI	GAGCTC	1 cut(s)	743
Eco81I	CCTNAGG	1 cut(s)	833
EcoICRI	GAGCTC	1 cut(s)	743
EcoT14I	CCWWGG	1 cut(s)	533
EcoT38I	GRGCYC	1 cut(s)	745
EgeI	GGCGCC	1 cut(s)	610
EheI	GGCGCC	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	533
Esp3I	CGTCTC	1 cut(s)	772
FaeI	CATG	2 cut(s)	452, 812
FaiI	YATR	3 cut(s)	450, 509, 810
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	2 cut(s)	448, 808
FauI	CCCGC	2 cut(s)	94, 165
FblI	GTMKAC	1 cut(s)	594
Fnu4HI	GCNGC	2 cut(s)	26, 49
FriOI	GRGCYC	1 cut(s)	745
Fsp4HI	GCNGC	2 cut(s)	26, 49
GlaI	GCGC	1 cut(s)	610
GluI	GCNGC	2 cut(s)	26, 49
GsuI	CTGGAG	1 cut(s)	626
HaeII	RGCGCY	1 cut(s)	612
HaeIII	GGCC	4 cut(s)	171, 384, 395, 838
HgaI	GACGC	2 cut(s)	547, 580
HhaI	GCGC	1 cut(s)	611
Hin1I	GRCGYC	3 cut(s)	558, 591, 609
Hin1II	CATG	2 cut(s)	452, 812
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HphI	GGTGA	8 cut(s)	77, 113, 296, 320, 344, 455, 491, 721
Hpy188I	TCNGA	2 cut(s)	429, 802
Hpy188III	TCNNGA	1 cut(s)	832
Hpy99I	CGWCG	2 cut(s)	563, 596
HpyAV	CCTTC	1 cut(s)	884
HpyCH4III	ACNGT	2 cut(s)	634, 727
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	8 cut(s)	14, 25, 452, 570, 579, 753, 808, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	576, 844
HpyF3I	CTNAG	6 cut(s)	31, 44, 519, 769, 818, 833
HpySE526I	ACGT	1 cut(s)	411
Hsp92I	GRCGYC	3 cut(s)	558, 591, 609
Hsp92II	CATG	2 cut(s)	452, 812
HspAI	GCGC	1 cut(s)	609
KasI	GGCGCC	1 cut(s)	608
Kzo9I	GATC	1 cut(s)	802
LmnI	GCTCC	6 cut(s)	406, 537, 645, 740, 794, 870
Lsp1109I	GCAGC	2 cut(s)	35, 37
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	2 cut(s)	647, 727
MalI	GATC	1 cut(s)	804
MbiI	CCGCTC	1 cut(s)	822
MboI	GATC	1 cut(s)	802
MboII	GAAGA	1 cut(s)	52
MhlI	GDGCHC	2 cut(s)	745, 829
MluCI	AATT	1 cut(s)	72
Mly113I	GGCGCC	1 cut(s)	609
MmeI	TCCRAC	1 cut(s)	464
MnlI	CCTC	9 cut(s)	47, 105, 222, 435, 447, 471, 477, 787, 828
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	2 cut(s)	603, 922
MspR9I	CCNGG	2 cut(s)	416, 482
Mva1269I	GAATGC	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	576, 844
NarI	GGCGCC	1 cut(s)	609
NciI	CCSGG	2 cut(s)	416, 482
NdeII	GATC	1 cut(s)	802
NlaIII	CATG	2 cut(s)	452, 812
NlaIV	GGNNCC	2 cut(s)	610, 717
NmuCI	GTSAC	1 cut(s)	727
PceI	AGGCCT	1 cut(s)	838
PctI	GAATGC	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	527
PflMI	CCANNNNNTGG	1 cut(s)	623
PinAI	ACCGGT	1 cut(s)	493
PkrI	GCNGC	2 cut(s)	27, 50
PluTI	GGCGCC	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	745
PspN4I	GGNNCC	2 cut(s)	610, 717
PspPI	GGNCC	5 cut(s)	229, 253, 277, 394, 890
PstI	CTGCAG	1 cut(s)	16
RsaI	GTAC	3 cut(s)	486, 512, 662
RsaNI	GTAC	3 cut(s)	485, 511, 661
SacI	GAGCTC	1 cut(s)	745
SalI	GTCGAC	1 cut(s)	593
SaqAI	TTAA	2 cut(s)	603, 922
SatI	GCNGC	2 cut(s)	26, 49
Sau3AI	GATC	1 cut(s)	802
Sau96I	GGNCC	5 cut(s)	229, 253, 277, 394, 890
ScrFI	CCNGG	2 cut(s)	416, 482
SduI	GDGCHC	2 cut(s)	745, 829
SfcI	CTRYAG	1 cut(s)	12
SfoI	GGCGCC	1 cut(s)	610
SinI	GGWCC	4 cut(s)	229, 253, 277, 890
Sse9I	AATT	1 cut(s)	72
SseBI	AGGCCT	1 cut(s)	838
SsiI	CCGC	5 cut(s)	87, 158, 548, 783, 822
SspDI	GGCGCC	1 cut(s)	608
SstI	GAGCTC	1 cut(s)	745
StuI	AGGCCT	1 cut(s)	838
StyD4I	CCNGG	2 cut(s)	414, 480
StyI	CCWWGG	1 cut(s)	533
TaaI	ACNGT	2 cut(s)	634, 727
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	1 cut(s)	594
TaqII	GACCGA	1 cut(s)	878
TasI	AATT	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	603, 922
Tru9I	TTAA	2 cut(s)	603, 922
TscAI	CASTG	2 cut(s)	21, 650
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	2 cut(s)	25, 48
Tsp45I	GTSAC	1 cut(s)	727
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	2 cut(s)	21, 650
Van91I	CCANNNNNTGG	1 cut(s)	623
VneI	GTGCAC	1 cut(s)	825
VpaK11BI	GGWCC	4 cut(s)	229, 253, 277, 890
XmiI	GTMKAC	1 cut(s)	594
XmnI	GAANNNNTTC	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.