Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012982

Physical Location & Seq

Genomic Coordinates Forward (+)

59471736 .. 59472185

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0437500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGTCATGGAAGAGCGCTGGGAAGTTGTGGGAGACACTTACTGCAATGCAAGGCTTCTCGGGGTTACAGAACCTGATCAAAGCAACGACTTGTCATGCACCAAGTTCTTGATGCATATCAAGGCCATCATTAGACGATTCGAGGTGCAGCGACCTAATGCTACCATGGATTTAGATGTTGATATGTTATTAACAGCAAAGAATTGGAGTGTGGAAGAGGACGAAGCCACAATCGAGTTCTATTACGACGAAGATTATGATGTTAATGTTGCTGCCATGAAGTCCATTTCCGACGCACTATGTGGCCTGCAGGTTCCAGTCCAGACTCATTCGTCCTTGATCGACAGAATATTGTTCCAAGCTTCCAACGCCATAAGGAATTGTGAGGAGGATCGCAAAGTTTTGCATATGGCAGTGGAAGTCGATCTTTATGTTGCTGAGAAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0016020 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:0080050 GO:1901700 GO:2000026 GO:2000033 GO:2000034 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

149

Amino Acids

17.11

Weight (kDa)

4.45

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34700
fragaria_vesca	FvH4_3g09040
malus_domestica	MD05G1338000.v1.1 MD10G1293100.v1.1
prunus_persica	Prupe.4G048800_v2.0.a1
pyrus_communis	pycom05g28950 pycom10g24510 pycom14g04310
rosa_chinensis	RchiOBHm_Chr5g0008631
rosa_laevigata	RLG00000031588
rosa_multiflora	Rmu_sc0001665.1_g000026
rosa_roxburghii	Rroxscaffold_1G00067920
rosa_rugosa	Rorug04G0437500
rosa_samantha	Rh5AG066000 Rh5BG063400 Rh5CG073600 Rh5DG062800
rosa_wichuraiana	Rw5G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	331
Acc36I	ACCTGC	1 cut(s)	301
AclWI	GGATC	1 cut(s)	399
AdeI	CACNNNGTG	1 cut(s)	302
AfeI	AGCGCT	1 cut(s)	17
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	399
AlwNI	CAGNNNCTG	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	59
Aor51HI	AGCGCT	1 cut(s)	17
AoxI	GGCC	2 cut(s)	123, 304
ApeKI	GCWGC	2 cut(s)	148, 272
AspLEI	GCGC	1 cut(s)	18
AvaI	CYCGRG	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	160, 259
BccI	CCATC	1 cut(s)	134
BclI	TGATCA	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	19
BfuAI	ACCTGC	1 cut(s)	301
BisI	GCNGC	2 cut(s)	149, 273
BlsI	GCNGC	2 cut(s)	150, 274
BmeT110I	CYCGRG	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	1 cut(s)	102
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	165
BseJI	GATNNNNATC	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	2 cut(s)	160, 259
BseYI	CCCAGC	1 cut(s)	18
BsgI	GTGCAG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	125, 306
BsiHKCI	CYCGRG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	27
BsnI	GGCC	2 cut(s)	125, 306
BsoBI	CYCGRG	1 cut(s)	59
Bsp143I	GATC	4 cut(s)	76, 339, 391, 424
Bsp19I	CCATGG	1 cut(s)	165
BspANI	GGCC	2 cut(s)	125, 306
BspCNI	CTCAG	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	312
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	399
BspQI	GCTCTTC	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	4 cut(s)	76, 339, 391, 424
BssT1I	CCWWGG	1 cut(s)	165
Bst6I	CTCTTC	2 cut(s)	6, 210
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	438
BstDSI	CCRYGG	1 cut(s)	165
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	4 cut(s)	79, 342, 394, 427
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	4 cut(s)	76, 339, 391, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	160, 259
BsuRI	GGCC	2 cut(s)	125, 306
BtgI	CCRYGG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	308
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	18
CseI	GACGC	1 cut(s)	302
CviAII	CATG	4 cut(s)	7, 96, 166, 277
CviJI	RGCY	5 cut(s)	55, 125, 227, 306, 362
CviKI_1	RGCY	5 cut(s)	55, 125, 227, 306, 362
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	4 cut(s)	78, 341, 393, 426
DpnII	GATC	4 cut(s)	76, 339, 391, 424
DraIII	CACNNNGTG	1 cut(s)	302
DrdI	GACNNNNNNGTC	1 cut(s)	331
DseDI	GACNNNNNNGTC	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	6, 210
EarI	CTCTTC	2 cut(s)	6, 210
Eco130I	CCWWGG	1 cut(s)	165
Eco47III	AGCGCT	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	4 cut(s)	10, 99, 169, 280
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FatI	CATG	4 cut(s)	6, 95, 165, 276
FauNDI	CATATG	1 cut(s)	408
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	149, 273
Fsp4HI	GCNGC	2 cut(s)	149, 273
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	2 cut(s)	149, 273
GsaI	CCCAGC	1 cut(s)	22
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	125, 306
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	4 cut(s)	10, 99, 169, 280
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	2 cut(s)	138, 325
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	2 cut(s)	109, 322
Hpy99I	CGWCG	2 cut(s)	251, 296
HpyCH4V	TGCA	7 cut(s)	45, 50, 99, 115, 148, 310, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	1 cut(s)	438
Hsp92II	CATG	4 cut(s)	10, 99, 169, 280
HspAI	GCGC	1 cut(s)	16
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	4 cut(s)	76, 339, 391, 424
LguI	GCTCTTC	1 cut(s)	6
LpnPI	CCDG	6 cut(s)	4, 87, 296, 320, 330, 335
Lsp1109I	GCAGC	2 cut(s)	160, 259
LweI	GCATC	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	4 cut(s)	78, 341, 393, 426
MboI	GATC	4 cut(s)	76, 339, 391, 424
MboII	GAAGA	3 cut(s)	23, 227, 263
MluCI	AATT	2 cut(s)	202, 379
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	2 cut(s)	315, 390
MnlI	CCTC	4 cut(s)	136, 211, 379, 382
Mph1103I	ATGCAT	1 cut(s)	117
MseI	TTAA	2 cut(s)	191, 264
MwoI	GCNNNNNNNGC	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	165
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	4 cut(s)	76, 339, 391, 424
NlaIII	CATG	4 cut(s)	10, 99, 169, 280
NlaIV	GGNNCC	1 cut(s)	315
NsiI	ATGCAT	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	150, 274
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	312
PstNI	CAGNNNCTG	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	2 cut(s)	191, 264
SatI	GCNGC	2 cut(s)	149, 273
Sau3AI	GATC	4 cut(s)	76, 339, 391, 424
SbfI	CCTGCAGG	1 cut(s)	312
SchI	GAGTC	1 cut(s)	319
SdaI	CCTGCAGG	1 cut(s)	312
SetI	ASST	5 cut(s)	76, 147, 157, 315, 364
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	308
Sse8387I	CCTGCAGG	1 cut(s)	312
Sse9I	AATT	2 cut(s)	202, 379
SspI	AATATT	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	165
TaqI	TCGA	4 cut(s)	141, 234, 342, 423
TasI	AATT	2 cut(s)	202, 379
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	2 cut(s)	191, 264
Tru9I	TTAA	2 cut(s)	191, 264
TscAI	CASTG	1 cut(s)	420
TseI	GCWGC	2 cut(s)	148, 272
TspDTI	ATGAA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	420
Zsp2I	ATGCAT	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.