AT2G35230

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008698
Physical Location & Seq
Forward (+)
14842291 .. 14844465
2175 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35230.3

Sequence Viewer

Length: 1209 bp
ATGGATAGGCCTAGACAAAATGATCATTTGGGTGTGAATAGGATTGGGAAAAATATCAGAAAGAGTCCTCTTCATCAATCGACTTTCGCTGCCAGTACTAGCAACGGTGCCGCTCCAAGGCTTCAAACACAGCCTCAGGTTTATAACATAAGCAAGAACGACTTTAGAAGTATTGTTCAGCAGCTAACGGGTTCTCCATCACGTGAAAGCCTTCCTCGGCCTCCTCAGAACAACTCGCTAAGGCCTCAGAATACACGGTTGCAGCGGATCAGACCATCCCCCTTAACGCAGTTAAACCGGCCTGCGGTTCCTCTCCCTTCCATGGCTCCGCCACAGTCTCATCCTCAGTTTGCTAGACAGCCTCCACACCAGCCACCTTTCCCACAAACCACACAACAACCAATGATGGGTCACAGGGACCAGTTTTGGTCTAATACAGCTGAGTCTCCCGTCTCAGAGTATATGCGTTATCTTCAAAGTTCACTTGGAGATTCAGGACCCAATGCTAACCAAATGCAGCCAGGTCATGAGCAGCGGCCTTATATCCCAGGTCATGAGCAACGGCCATATGTGCCAGGTAATGAGCAGCAGCCATATATGCCAGGTAATGAGCAGCGGCCATATATCCCAGGTCATGAGCAGCGGTCATATATGCCAGCTCAATCTCAGTCTCAGTCTCAACCTCAACCTCAACCTCAACCTCAGCAACATATGATGCCTGGACCGCAACCTCGAATGAACATGCAGGGCCCTCTTCAACCTAACCAGTATCTACCACCACCCGGGTTAGTTCCTAGCCCAGTGCCTCATAATCTTCCTTCTCCTCGGTTCAATGCTCCTGTACCTGTGACGCCTACTCAGCCCTCTCCCATGTTCAGTCAGATGTATGGTGGATTTCCTTCTCCTCGATATAACGGTTTTGGACCACTGCAGTCACCTACATCCCAATTTCTTCAACCATCTCCTACCGGTTACCCGAATATGTTCTCTCCGAGATCGCCTTACCCATTGCTGTCACCAGGAGTTCAGTATCCTCAACCACTTACCCCAAACTTCTCATTTTCACAAATTGCTCAACAAGGAAGTCTTGGACCCGGTGCAGGTCCAAGTCAAGGTCCTCCTCAGCCTCCTCCTTCTCCAGGGCTCATGTTCCCGTTATCTCCATCCGGGTTCTTCCCCATGCCAAGTCCAAGATGGAATGATTACTAG

Protein Analysis

402

Amino Acids

44.69

Weight (kDa)

10.35

Isoelectric Point (pI)

99.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 44 - 67 1.4e-09 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 1091
AccB1I GGYRCC 1 cut(s) 107
AccBSI CCGCTC 1 cut(s) 113
AciI CCGC 8 cut(s) 111, 265, 305, 329, 535, 616, 643, 725
AclWI GGATC 1 cut(s) 275
AcoI YGGCCR 2 cut(s) 563, 617
AcvI CACGTG 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 851
AfaI GTAC 2 cut(s) 97, 843
AfiI CCNNNNNNNGG 8 cut(s) 117, 304, 322, 407, 782, 1100, 1112, 1139
AgeI ACCGGT 1 cut(s) 968
AgsI TTSAA 5 cut(s) 125, 476, 758, 832, 956
AjnI CCWGG 8 cut(s) 520, 547, 574, 601, 628, 718, 1018, 1138
AluBI AGCT 3 cut(s) 184, 440, 659
AluI AGCT 3 cut(s) 184, 440, 659
Alw26I GTCTC 5 cut(s) 342, 450, 457, 675, 681
AlwI GGATC 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 782
AoxI GGCC 8 cut(s) 8, 218, 242, 299, 536, 563, 617, 748
ApaI GGGCCC 1 cut(s) 752
ApeKI GCWGC 9 cut(s) 89, 181, 262, 517, 532, 586, 589, 613, 640
AsiGI ACCGGT 1 cut(s) 968
Asp700I GAANNNNTTC 2 cut(s) 210, 983
AspS9I GGNCC 9 cut(s) 418, 497, 722, 748, 749, 923, 1091, 1103, 1115
AsuC2I CCSGG 4 cut(s) 783, 784, 1095, 1168
AsuHPI GGTGA 2 cut(s) 927, 1008
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 7 cut(s) 418, 497, 722, 923, 1091, 1103, 1115
AxyI CCTNAGG 1 cut(s) 135
BaeGI GKGCMC 1 cut(s) 752
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 2 cut(s) 752, 1146
BbrPI CACGTG 1 cut(s) 203
BbvCI CCTCAGC 2 cut(s) 702, 1122
BbvI GCAGC 9 cut(s) 76, 193, 274, 529, 544, 598, 601, 625, 652
BccI CCATC 6 cut(s) 205, 283, 400, 967, 1171, 1188
BceAI ACGGC 1 cut(s) 578
BciT130I CCWGG 8 cut(s) 522, 549, 576, 603, 630, 720, 1020, 1140
BciVI GTATCC 1 cut(s) 1041
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 4 cut(s) 783, 784, 1095, 1168
BcoDI GTCTC 5 cut(s) 342, 450, 457, 675, 681
BfaI CTAG 5 cut(s) 12, 99, 354, 795, 1207
BfmI CTRYAG 1 cut(s) 929
BfuAI ACCTGC 1 cut(s) 1091
BfuI GTATCC 1 cut(s) 1041
BmcAI AGTACT 1 cut(s) 97
Bme18I GGWCC 7 cut(s) 418, 497, 722, 923, 1091, 1103, 1115
BmeT110I CYCGRG 1 cut(s) 782
BmgT120I GGNCC 9 cut(s) 418, 497, 722, 748, 749, 923, 1091, 1103, 1115
BmiI GGNNCC 7 cut(s) 109, 309, 327, 419, 499, 750, 1093
BmrI ACTGGG 1 cut(s) 794
BmsI GCATC 1 cut(s) 705
BmuI ACTGGG 1 cut(s) 794
BpmI CTGGAG 1 cut(s) 1122
Bpu10I CCTNAGC 3 cut(s) 239, 702, 1122
BpuMI CCSGG 4 cut(s) 783, 784, 1095, 1168
BsaAI YACGTR 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 851
BsaJI CCNNGG 8 cut(s) 116, 215, 321, 547, 628, 782, 824, 1139
BsaWI WCCGGW 1 cut(s) 968
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bsc4I CCNNNNNNNGG 8 cut(s) 117, 304, 322, 407, 782, 1100, 1112, 1139
Bse118I RCCGGY 2 cut(s) 297, 968
Bse1I ACTGG 4 cut(s) 93, 421, 766, 800
Bse21I CCTNAGG 1 cut(s) 135
Bse3DI GCAATG 1 cut(s) 1007
BseBI CCWGG 8 cut(s) 522, 549, 576, 603, 630, 720, 1020, 1140
BseDI CCNNGG 8 cut(s) 116, 215, 321, 547, 628, 782, 824, 1139
BseGI GGATG 4 cut(s) 275, 340, 941, 1163
BseLI CCNNNNNNNGG 8 cut(s) 117, 304, 322, 407, 782, 1100, 1112, 1139
BseMI GCAATG 1 cut(s) 1007
BseNI ACTGG 4 cut(s) 93, 421, 766, 800
BseRI GAGGAG 5 cut(s) 213, 813, 894, 1110, 1119
BseSI GKGCMC 1 cut(s) 752
BseXI GCAGC 9 cut(s) 76, 193, 274, 529, 544, 598, 601, 625, 652
BsgI GTGCAG 1 cut(s) 1119
BshFI GGCC 8 cut(s) 10, 220, 244, 301, 538, 565, 619, 750
BshNI GGYRCC 1 cut(s) 107
BshTI ACCGGT 1 cut(s) 968
BsiHKCI CYCGRG 1 cut(s) 782
BsiSI CCGG 5 cut(s) 298, 783, 969, 1095, 1167
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 8 cut(s) 117, 304, 322, 407, 782, 1100, 1112, 1139
BsmAI GTCTC 5 cut(s) 342, 450, 457, 675, 681
BsmBI CGTCTC 1 cut(s) 457
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 8 cut(s) 10, 220, 244, 301, 538, 565, 619, 750
BsoBI CYCGRG 1 cut(s) 782
Bsp120I GGGCCC 1 cut(s) 748
Bsp1286I GDGCHC 2 cut(s) 752, 1146
Bsp143I GATC 3 cut(s) 22, 267, 995
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 8 cut(s) 111, 265, 305, 329, 535, 616, 643, 725
BspANI GGCC 8 cut(s) 10, 220, 244, 301, 538, 565, 619, 750
BspHI TCATGA 3 cut(s) 526, 553, 634
BspLI GGNNCC 7 cut(s) 109, 309, 327, 419, 499, 750, 1093
BspMAI CTGCAG 1 cut(s) 933
BspMI ACCTGC 1 cut(s) 1091
BspPI GGATC 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 1007
BsrFI RCCGGY 2 cut(s) 297, 968
BsrI ACTGG 4 cut(s) 93, 421, 766, 800
BssAI RCCGGY 2 cut(s) 297, 968
BssECI CCNNGG 8 cut(s) 116, 215, 321, 547, 628, 782, 824, 1139
BssMI GATC 3 cut(s) 22, 267, 995
BssNI GRCGYC 1 cut(s) 851
BssT1I CCWWGG 2 cut(s) 116, 321
Bst2UI CCWGG 8 cut(s) 522, 549, 576, 603, 630, 720, 1020, 1140
Bst4CI ACNGT 4 cut(s) 107, 258, 336, 917
Bst6I CTCTTC 2 cut(s) 75, 759
BstACI GRCGYC 1 cut(s) 851
BstBAI YACGTR 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 303, 657
BstDSI CCRYGG 1 cut(s) 321
BstEII GGTNACC 1 cut(s) 971
BstENI CCTNNNNNAGG 1 cut(s) 1137
BstF5I GGATG 4 cut(s) 275, 340, 941, 1163
BstKTI GATC 3 cut(s) 25, 270, 998
BstMAI GTCTC 5 cut(s) 342, 450, 457, 675, 681
BstMBI GATC 3 cut(s) 22, 267, 995
BstMWI GCNNNNNNNGC 4 cut(s) 571, 598, 724, 859
BstNI CCWGG 8 cut(s) 522, 549, 576, 603, 630, 720, 1020, 1140
BstNSI RCATGY 1 cut(s) 745
BstPI GGTNACC 1 cut(s) 971
BstSFI CTRYAG 1 cut(s) 929
BstSLI GKGCMC 1 cut(s) 752
BstV1I GCAGC 9 cut(s) 76, 193, 274, 529, 544, 598, 601, 625, 652
Bsu36I CCTNAGG 1 cut(s) 135
BsuI GTATCC 1 cut(s) 1041
BsuRI GGCC 8 cut(s) 10, 220, 244, 301, 538, 565, 619, 750
BtgI CCRYGG 1 cut(s) 321
BtsCI GGATG 4 cut(s) 275, 340, 941, 1163
BtsI GCAGTG 1 cut(s) 926
BtsIMutI CAGTG 2 cut(s) 807, 926
BveI ACCTGC 1 cut(s) 1091
Cac8I GCNNGC 2 cut(s) 303, 657
CciI TCATGA 3 cut(s) 526, 553, 634
Cfr10I RCCGGY 2 cut(s) 297, 968
Cfr13I GGNCC 9 cut(s) 418, 497, 722, 748, 749, 923, 1091, 1103, 1115
Cfr9I CCCGGG 1 cut(s) 782
CseI GACGC 1 cut(s) 859
Csp6I GTAC 2 cut(s) 96, 842
CspAI ACCGGT 1 cut(s) 968
CviAII CATG 8 cut(s) 322, 527, 554, 635, 742, 871, 1147, 1180
CviQI GTAC 2 cut(s) 96, 842
DpnI GATC 3 cut(s) 24, 269, 997
DpnII GATC 3 cut(s) 22, 267, 995
EaeI YGGCCR 2 cut(s) 563, 617
Eam1104I CTCTTC 2 cut(s) 75, 759
EarI CTCTTC 2 cut(s) 75, 759
EciI GGCGGA 1 cut(s) 318
Eco130I CCWWGG 2 cut(s) 116, 321
Eco147I AGGCCT 2 cut(s) 10, 244
Eco24I GRGCYC 2 cut(s) 752, 1146
Eco47I GGWCC 7 cut(s) 418, 497, 722, 923, 1091, 1103, 1115
Eco72I CACGTG 1 cut(s) 203
Eco81I CCTNAGG 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 782
Eco91I GGTNACC 1 cut(s) 971
EcoNI CCTNNNNNAGG 1 cut(s) 1137
EcoO109I RGGNCCY 4 cut(s) 497, 748, 749, 1115
EcoO65I GGTNACC 1 cut(s) 971
EcoRII CCWGG 8 cut(s) 520, 547, 574, 601, 628, 718, 1018, 1138
EcoT14I CCWWGG 2 cut(s) 116, 321
EcoT38I GRGCYC 2 cut(s) 752, 1146
ErhI CCWWGG 2 cut(s) 116, 321
Esp3I CGTCTC 1 cut(s) 457
FaeI CATG 8 cut(s) 325, 530, 557, 638, 745, 874, 1150, 1183
FalI AAGNNNNNCTT 4 cut(s) 146, 178, 1071, 1103
FaqI GGGAC 1 cut(s) 431
FatI CATG 8 cut(s) 321, 526, 553, 634, 741, 870, 1146, 1179
FauNDI CATATG 2 cut(s) 568, 711
FbaI TGATCA 1 cut(s) 22
FokI GGATG 4 cut(s) 262, 327, 928, 1150
FriOI GRGCYC 2 cut(s) 752, 1146
FspBI CTAG 5 cut(s) 12, 99, 354, 795, 1207
GsuI CTGGAG 1 cut(s) 1122
HaeIII GGCC 8 cut(s) 10, 220, 244, 301, 538, 565, 619, 750
HapII CCGG 5 cut(s) 298, 783, 969, 1095, 1167
HgaI GACGC 1 cut(s) 859
Hin1I GRCGYC 1 cut(s) 851
Hin1II CATG 8 cut(s) 325, 530, 557, 638, 745, 874, 1150, 1183
HinfI GANTC 3 cut(s) 64, 443, 491
HpaII CCGG 5 cut(s) 298, 783, 969, 1095, 1167
HphI GGTGA 2 cut(s) 927, 1008
Hpy166II GTNNAC 1 cut(s) 482
Hpy188I TCNGA 7 cut(s) 59, 228, 249, 272, 457, 882, 993
Hpy188III TCNNGA 4 cut(s) 495, 527, 554, 635
Hpy8I GTNNAC 1 cut(s) 482
HpyAV CCTTC 5 cut(s) 221, 327, 828, 909, 1143
HpyCH4III ACNGT 4 cut(s) 107, 258, 336, 917
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 5 cut(s) 262, 517, 745, 931, 1100
HpyF10VI GCNNNNNNNGC 4 cut(s) 571, 598, 724, 859
HpySE526I ACGT 1 cut(s) 202
Hsp92I GRCGYC 1 cut(s) 851
Hsp92II CATG 8 cut(s) 325, 530, 557, 638, 745, 874, 1150, 1183
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 3 cut(s) 22, 267, 995
LmnI GCTCC 3 cut(s) 118, 331, 841
Lsp1109I GCAGC 9 cut(s) 76, 193, 274, 529, 544, 598, 601, 625, 652
LweI GCATC 1 cut(s) 705
MaeI CTAG 5 cut(s) 12, 99, 354, 795, 1207
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 5 cut(s) 410, 847, 933, 971, 1014
MalI GATC 3 cut(s) 24, 269, 997
MbiI CCGCTC 1 cut(s) 113
MboI GATC 3 cut(s) 22, 267, 995
MboII GAAGA 6 cut(s) 62, 464, 746, 806, 944, 1165
MhlI GDGCHC 2 cut(s) 752, 1146
MluCI AATT 2 cut(s) 947, 1068
MlyI GAGTC 2 cut(s) 73, 452
MroXI GAANNNNTTC 2 cut(s) 210, 983
MseI TTAA 2 cut(s) 284, 293
MslI CAYNNNNRTG 1 cut(s) 30
MspA1I CMGCKG 5 cut(s) 265, 440, 535, 616, 643
MspI CCGG 5 cut(s) 298, 783, 969, 1095, 1167
MvaI CCWGG 8 cut(s) 522, 549, 576, 603, 630, 720, 1020, 1140
MwoI GCNNNNNNNGC 4 cut(s) 571, 598, 724, 859
NciI CCSGG 4 cut(s) 783, 784, 1095, 1168
NcoI CCATGG 1 cut(s) 321
NdeI CATATG 2 cut(s) 568, 711
NdeII GATC 3 cut(s) 22, 267, 995
NlaIII CATG 8 cut(s) 325, 530, 557, 638, 745, 874, 1150, 1183
NlaIV GGNNCC 7 cut(s) 109, 309, 327, 419, 499, 750, 1093
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 4 cut(s) 410, 847, 933, 1014
NspI RCATGY 1 cut(s) 745
PagI TCATGA 3 cut(s) 526, 553, 634
PceI AGGCCT 2 cut(s) 10, 244
PdmI GAANNNNTTC 2 cut(s) 210, 983
PfeI GAWTC 1 cut(s) 491
PinAI ACCGGT 1 cut(s) 968
PleI GAGTC 2 cut(s) 72, 451
PmaCI CACGTG 1 cut(s) 203
PmlI CACGTG 1 cut(s) 203
PpsI GAGTC 2 cut(s) 72, 451
Ppu21I YACGTR 1 cut(s) 203
PpuMI RGGWCCY 2 cut(s) 497, 1115
PsiI TTATAA 1 cut(s) 144
Psp5II RGGWCCY 2 cut(s) 497, 1115
Psp6I CCWGG 8 cut(s) 520, 547, 574, 601, 628, 718, 1018, 1138
PspCI CACGTG 1 cut(s) 203
PspEI GGTNACC 1 cut(s) 971
PspGI CCWGG 8 cut(s) 520, 547, 574, 601, 628, 718, 1018, 1138
PspN4I GGNNCC 7 cut(s) 109, 309, 327, 419, 499, 750, 1093
PspOMI GGGCCC 1 cut(s) 748
PspPI GGNCC 9 cut(s) 418, 497, 722, 748, 749, 923, 1091, 1103, 1115
PspPPI RGGWCCY 2 cut(s) 497, 1115
PstI CTGCAG 1 cut(s) 933
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 2 cut(s) 97, 843
RsaNI GTAC 2 cut(s) 96, 842
RseI CAYNNNNRTG 1 cut(s) 30
SaqAI TTAA 2 cut(s) 284, 293
Sau3AI GATC 3 cut(s) 22, 267, 995
Sau96I GGNCC 9 cut(s) 418, 497, 722, 748, 749, 923, 1091, 1103, 1115
ScaI AGTACT 1 cut(s) 97
SchI GAGTC 2 cut(s) 73, 452
SduI GDGCHC 2 cut(s) 752, 1146
SfaNI GCATC 1 cut(s) 705
SfcI CTRYAG 1 cut(s) 929
SinI GGWCC 7 cut(s) 418, 497, 722, 923, 1091, 1103, 1115
SmaI CCCGGG 1 cut(s) 784
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 2 cut(s) 947, 1068
SseBI AGGCCT 2 cut(s) 10, 244
SsiI CCGC 8 cut(s) 111, 265, 305, 329, 535, 616, 643, 725
SspMI CTAG 5 cut(s) 12, 99, 354, 795, 1207
StuI AGGCCT 2 cut(s) 10, 244
StyI CCWWGG 2 cut(s) 116, 321
TaaI ACNGT 4 cut(s) 107, 258, 336, 917
TaiI ACGT 1 cut(s) 205
TaqI TCGA 3 cut(s) 80, 733, 907
TasI AATT 2 cut(s) 947, 1068
TatI WGTACW 1 cut(s) 95
TauI GCSGC 3 cut(s) 113, 538, 619
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 2 cut(s) 284, 293
Tru9I TTAA 2 cut(s) 284, 293
TscAI CASTG 2 cut(s) 807, 933
TseFI GTSAC 4 cut(s) 410, 847, 933, 1014
TseI GCWGC 9 cut(s) 89, 181, 262, 517, 532, 586, 589, 613, 640
Tsp45I GTSAC 4 cut(s) 410, 847, 933, 1014
TspDTI ATGAA 2 cut(s) 62, 752
TspMI CCCGGG 1 cut(s) 782
TspRI CASTG 2 cut(s) 807, 933
VpaK11BI GGWCC 7 cut(s) 418, 497, 722, 923, 1091, 1103, 1115
XagI CCTNNNNNAGG 1 cut(s) 1137
XceI RCATGY 1 cut(s) 745
XcmI CCANNNNNNNNNTGG 1 cut(s) 1191
XmaI CCCGGG 1 cut(s) 782
XmnI GAANNNNTTC 2 cut(s) 210, 983
XspI CTAG 5 cut(s) 12, 99, 354, 795, 1207
ZrmI AGTACT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.