Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008698

Physical Location & Seq

Genomic Coordinates Forward (+)

9016466 .. 9018795

Gene Structure 2330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0115600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTATAATCTATTATCGGCATCACCGAGAGCTATCGCTATAGCCCGCATAGCGTACGGTTGCGTATATACTACGCCCTCTACAACAACCCACCTCTTAACCTCCACCCCTACTCGCTCTTTCTCTCACCTTCACCGTCTCCGCCGCACAGTCTCACTCCTCCGACCACCCACTCTCTCCTCCTGTCCTAATTTCCTCACGGGTAACTCTCACTTCTGCGGAATGGCGGTAATTGCTCCTCTCTTTTCCTATCTCAGCTTAATGTGGCTCTTGTCTGGGCATGGAGTTCGTGATAGCAAGGCAATGGTGGAGGGTTTGCAAGGTTATGGAGTGATTAGTTCCAAGAAGGTTGCTGAAGTGATGGGGACTATTGATAGGGCTTTGTTTGTGCCTGATGGGACCCCAGCGTATGCTGACTCCCCCATGTCGATTGGTTATAATGCCACCATTTCTGCACCTCATATGCATGCAACATGCCTGCAATTGTTGGAAAAGAATTTGCAGCCTGGTATGCATGCTTTGGATGTTGGATCAGGGTCGGGATATTTGACTGCATGTTTTGCACTGATGGTTGGGCCAAAAGGTCGAGCAGTGGGTGTAGAACACATTCCGGAGTTGGTCTCTTCCTCAATTGAGAATATTCAAAAAAGTGCAGTAGCACCATTACTGAAAGAAGGTTCCCTCTCAGTGCATGTCAGTGATGGAAGGCTAGGTTGGCCTGAATTTGCACCTTATGATGCTATTCATGTTGGGGCAGCTGCTCCAGAAATACCACAACCACTTATTGACCAATTGAAGCCTGGAGGAAGAATGGTGATTCCTGTGGGAAACCTATACCAGGATTTAAAGGTTGTGGACAAGAACATGGATGGTTCTGTAAGTGTCAGGACTGAAACTTCAGTTCGTTATGTTCCACTGACAAGTCGAGAAGCTCAGTTGCGAGGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0017076 GO:0030054 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

316

Amino Acids

33.89

Weight (kDa)

8.76

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCMT	PF01135	99 - 310	5.1e-84	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_31	PF13847	168 - 220	2.4e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32610 AT1G32610 AT1G32610 AT2G35230 AT2G35230 AT2G35230
fragaria_vesca	FvH4_4g21960
malus_domestica	MD06G1101200.v1.1 MD14G1120900.v1.1
prunus_persica	Prupe.5G036600_v2.0.a1 Prupe.5G036600_v2.0.a1 Prupe.5G036600_v2.0.a1
pyrus_communis	pycom06g09640
rosa_chinensis	RchiOBHm_Chr7g0209711
rosa_laevigata	RLG00000003100
rosa_multiflora	Rmu_sc0002616.1_g000013
rosa_roxburghii	Rroxscaffold_3G00249130
rosa_rugosa	Rorug07G0115600
rosa_samantha	Rh7AG249300 Rh7BG243200 Rh7CG265300 Rh7DG255100
rosa_wichuraiana	Rw7G021130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AccIII	TCCGGA	1 cut(s)	610
AciI	CCGC	5 cut(s)	46, 142, 145, 219, 227
AclWI	GGATC	1 cut(s)	538
AcsI	RAATTY	2 cut(s)	496, 722
AcuI	CTGAAG	2 cut(s)	375, 882
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	838
AgsI	TTSAA	2 cut(s)	644, 796
AjnI	CCWGG	3 cut(s)	505, 799, 837
AjuI	GAANNNNNNNTTGG	2 cut(s)	697, 729
AluBI	AGCT	4 cut(s)	32, 258, 758, 932
AluI	AGCT	4 cut(s)	32, 258, 758, 932
Alw26I	GTCTC	3 cut(s)	143, 157, 625
AlwI	GGATC	1 cut(s)	538
Aor13HI	TCCGGA	1 cut(s)	610
AoxI	GGCC	2 cut(s)	575, 716
ApeKI	GCWGC	3 cut(s)	502, 755, 758
ApoI	RAATTY	2 cut(s)	496, 722
Asp700I	GAANNNNTTC	1 cut(s)	606
AspS9I	GGNCC	2 cut(s)	399, 575
AsuHPI	GGTGA	4 cut(s)	15, 119, 125, 826
AvaII	GGWCC	1 cut(s)	399
BbvI	GCAGC	3 cut(s)	514, 745, 767
BccI	CCATC	5 cut(s)	355, 389, 562, 695, 863
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	3 cut(s)	507, 801, 839
BcoDI	GTCTC	3 cut(s)	143, 157, 625
BfaI	CTAG	1 cut(s)	710
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	4 cut(s)	145, 503, 756, 759
BlsI	GCNGC	4 cut(s)	146, 504, 757, 760
Bme1390I	CCNGG	3 cut(s)	507, 801, 839
Bme18I	GGWCC	1 cut(s)	399
BmgT120I	GGNCC	2 cut(s)	399, 575
BmiI	GGNNCC	3 cut(s)	400, 401, 679
BmrFI	CCNGG	3 cut(s)	507, 801, 839
BmsI	GCATC	2 cut(s)	29, 727
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
BpmI	CTGGAG	2 cut(s)	747, 822
BsaI	GGTCTC	1 cut(s)	625
BsaWI	WCCGGW	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	1 cut(s)	838
Bse3DI	GCAATG	1 cut(s)	309
BseAI	TCCGGA	1 cut(s)	610
BseBI	CCWGG	3 cut(s)	507, 801, 839
BseGI	GGATG	2 cut(s)	529, 874
BseLI	CCNNNNNNNGG	1 cut(s)	838
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	3 cut(s)	268, 699, 947
BseRI	GAGGAG	3 cut(s)	149, 169, 228
BseXI	GCAGC	3 cut(s)	514, 745, 767
BseYI	CCCAGC	1 cut(s)	403
BsgI	GTGCAG	2 cut(s)	438, 672
BshFI	GGCC	2 cut(s)	577, 718
BsiSI	CCGG	1 cut(s)	611
BsiWI	CGTACG	1 cut(s)	54
BslFI	GGGAC	2 cut(s)	379, 412
BslI	CCNNNNNNNGG	1 cut(s)	838
BsmAI	GTCTC	3 cut(s)	143, 157, 625
BsmBI	CGTCTC	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	379, 412
BsnI	GGCC	2 cut(s)	577, 718
Bso31I	GGTCTC	1 cut(s)	625
Bsp13I	TCCGGA	1 cut(s)	610
Bsp143I	GATC	1 cut(s)	530
BspACI	CCGC	5 cut(s)	46, 142, 145, 219, 227
BspANI	GGCC	2 cut(s)	577, 718
BspCNI	CTCAG	3 cut(s)	267, 698, 946
BspEI	TCCGGA	1 cut(s)	610
BspLI	GGNNCC	3 cut(s)	400, 401, 679
BspPI	GGATC	1 cut(s)	538
BspTNI	GGTCTC	1 cut(s)	625
BsrDI	GCAATG	1 cut(s)	309
BssMI	GATC	1 cut(s)	530
Bst2UI	CCWGG	3 cut(s)	507, 801, 839
Bst4CI	ACNGT	3 cut(s)	59, 137, 151
Bst6I	CTCTTC	1 cut(s)	628
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	4 cut(s)	46, 468, 479, 516
BstDEI	CTNAG	3 cut(s)	254, 685, 933
BstENI	CCTNNNNNAGG	1 cut(s)	836
BstF5I	GGATG	2 cut(s)	529, 874
BstKTI	GATC	1 cut(s)	533
BstMAI	GTCTC	3 cut(s)	143, 157, 625
BstMBI	GATC	1 cut(s)	530
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 233, 511, 560, 715
BstNI	CCWGG	3 cut(s)	507, 801, 839
BstNSI	RCATGY	5 cut(s)	470, 477, 518, 558, 695
BstSCI	CCNGG	3 cut(s)	505, 799, 837
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	3 cut(s)	514, 745, 767
BsuRI	GGCC	2 cut(s)	577, 718
BtsCI	GGATG	2 cut(s)	529, 874
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	5 cut(s)	563, 597, 693, 703, 914
Cac8I	GCNNGC	4 cut(s)	46, 468, 479, 516
Cfr13I	GGNCC	2 cut(s)	399, 575
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	9 cut(s)	281, 424, 467, 474, 515, 555, 692, 746, 865
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	3 cut(s)	254, 685, 933
DpnI	GATC	1 cut(s)	532
DpnII	GATC	1 cut(s)	530
DraI	TTTAAA	1 cut(s)	846
Eam1104I	CTCTTC	1 cut(s)	628
EarI	CTCTTC	1 cut(s)	628
EciI	GGCGGA	1 cut(s)	131
Eco31I	GGTCTC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	399
Eco57I	CTGAAG	2 cut(s)	375, 882
EcoNI	CCTNNNNNAGG	1 cut(s)	836
EcoO109I	RGGNCCY	1 cut(s)	399
EcoRII	CCWGG	3 cut(s)	505, 799, 837
EcoT22I	ATGCAT	2 cut(s)	468, 516
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	9 cut(s)	284, 427, 470, 477, 518, 558, 695, 749, 868
FaqI	GGGAC	2 cut(s)	379, 412
FatI	CATG	9 cut(s)	280, 423, 466, 473, 514, 554, 691, 745, 864
FauI	CCCGC	1 cut(s)	53
FauNDI	CATATG	1 cut(s)	462
Fnu4HI	GCNGC	4 cut(s)	145, 503, 756, 759
FokI	GGATG	2 cut(s)	536, 881
Fsp4HI	GCNGC	4 cut(s)	145, 503, 756, 759
FspBI	CTAG	1 cut(s)	710
GluI	GCNGC	4 cut(s)	145, 503, 756, 759
GsaI	CCCAGC	1 cut(s)	407
GsuI	CTGGAG	2 cut(s)	747, 822
HaeIII	GGCC	2 cut(s)	577, 718
HapII	CCGG	1 cut(s)	611
Hin1II	CATG	9 cut(s)	284, 427, 470, 477, 518, 558, 695, 749, 868
HinfI	GANTC	2 cut(s)	416, 817
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	4 cut(s)	15, 119, 125, 826
Hpy166II	GTNNAC	1 cut(s)	856
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	6 cut(s)	290, 540, 611, 764, 886, 926
Hpy8I	GTNNAC	1 cut(s)	856
HpyAV	CCTTC	4 cut(s)	140, 340, 668, 699
HpyCH4III	ACNGT	3 cut(s)	59, 137, 151
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 233, 511, 560, 715
HpyF3I	CTNAG	3 cut(s)	254, 685, 933
Hsp92II	CATG	9 cut(s)	284, 427, 470, 477, 518, 558, 695, 749, 868
KflI	GGGWCCC	1 cut(s)	399
Kpn2I	TCCGGA	1 cut(s)	610
Kzo9I	GATC	1 cut(s)	530
LmnI	GCTCC	2 cut(s)	241, 766
Lsp1109I	GCAGC	3 cut(s)	514, 745, 767
LweI	GCATC	2 cut(s)	29, 727
MaeI	CTAG	1 cut(s)	710
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	1 cut(s)	532
MboI	GATC	1 cut(s)	530
MboII	GAAGA	2 cut(s)	615, 819
MfeI	CAATTG	3 cut(s)	482, 630, 791
MluCI	AATT	7 cut(s)	190, 231, 482, 496, 630, 722, 791
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	3 cut(s)	187, 468, 508
Mph1103I	ATGCAT	2 cut(s)	468, 516
MroI	TCCGGA	1 cut(s)	610
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	3 cut(s)	98, 260, 845
MslI	CAYNNNNRTG	2 cut(s)	465, 696
MspA1I	CMGCKG	1 cut(s)	758
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	3 cut(s)	507, 801, 839
MunI	CAATTG	3 cut(s)	482, 630, 791
MvaI	CCWGG	3 cut(s)	507, 801, 839
MwoI	GCNNNNNNNGC	5 cut(s)	50, 233, 511, 560, 715
NdeI	CATATG	1 cut(s)	462
NdeII	GATC	1 cut(s)	530
NlaIII	CATG	9 cut(s)	284, 427, 470, 477, 518, 558, 695, 749, 868
NlaIV	GGNNCC	3 cut(s)	400, 401, 679
NsiI	ATGCAT	2 cut(s)	468, 516
NspI	RCATGY	5 cut(s)	470, 477, 518, 558, 695
PaeI	GCATGC	2 cut(s)	470, 518
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	817
Pfl23II	CGTACG	1 cut(s)	54
PkrI	GCNGC	4 cut(s)	146, 504, 757, 760
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
PpuMI	RGGWCCY	1 cut(s)	399
PsiI	TTATAA	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	399
Psp6I	CCWGG	3 cut(s)	505, 799, 837
PspFI	CCCAGC	1 cut(s)	403
PspGI	CCWGG	3 cut(s)	505, 799, 837
PspLI	CGTACG	1 cut(s)	54
PspN4I	GGNNCC	3 cut(s)	400, 401, 679
PspPI	GGNCC	2 cut(s)	399, 575
PspPPI	RGGWCCY	1 cut(s)	399
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	2 cut(s)	465, 696
SaqAI	TTAA	3 cut(s)	98, 260, 845
SatI	GCNGC	4 cut(s)	145, 503, 756, 759
Sau3AI	GATC	1 cut(s)	530
Sau96I	GGNCC	2 cut(s)	399, 575
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	3 cut(s)	507, 801, 839
SfaNI	GCATC	2 cut(s)	29, 727
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	399
SmiMI	CAYNNNNRTG	2 cut(s)	465, 696
SphI	GCATGC	2 cut(s)	470, 518
Sse9I	AATT	7 cut(s)	190, 231, 482, 496, 630, 722, 791
SsiI	CCGC	5 cut(s)	46, 142, 145, 219, 227
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	1 cut(s)	710
StyD4I	CCNGG	3 cut(s)	505, 799, 837
TaaI	ACNGT	3 cut(s)	59, 137, 151
TaqI	TCGA	3 cut(s)	428, 586, 925
TasI	AATT	7 cut(s)	190, 231, 482, 496, 630, 722, 791
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	817
Tru1I	TTAA	3 cut(s)	98, 260, 845
Tru9I	TTAA	3 cut(s)	98, 260, 845
TscAI	CASTG	5 cut(s)	570, 597, 693, 703, 921
TseI	GCWGC	3 cut(s)	502, 755, 758
TspDTI	ATGAA	1 cut(s)	734
TspRI	CASTG	5 cut(s)	570, 597, 693, 703, 921
VpaK11BI	GGWCC	1 cut(s)	399
XagI	CCTNNNNNAGG	1 cut(s)	836
XapI	RAATTY	2 cut(s)	496, 722
XceI	RCATGY	5 cut(s)	470, 477, 518, 558, 695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	797
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	1 cut(s)	710
Zsp2I	ATGCAT	2 cut(s)	468, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.