Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008698

Physical Location & Seq

Genomic Coordinates Forward (+)

4155069 .. 4158442

Gene Structure 3374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G036600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGATAACTCCGCAAACAGGCATAATGATCATTTGGGTGTGAACAAAATTGGGAAAAATATAAGGAAGAGTCCATTGCACCAACCCAATTTTGCTAATAATGCCGCTAGGCAACAGCCTCAGCCTCAGGTATACAACATAAGCAAGAATGATTTCCGCAACATTGTTCAGCAGCTTACTGGTTCGCCATCACAAGAACCTTTGCCTAGACCTCCTCAGAATCCGCCAAAACCCCAAAGTATGCGGTTGCAGAGAATTCGGCCTCCTCCATTAACACCTATCAATAATAGACCAGTAATACCGCCTCCGGCTCCTCATCCTTCAGCTCCACCGCTGGTTCCATACAATAATAACTTCATGAGGACTCAGTTTGGACAACCATCACCTACACCGATGCCGCCATTTCCACATGGAGACTCAATGTGGGCAAATACAGCTGAGTCTCCTATCTCAGCATATATGAGGTACCTTCAAAGTTCGATGCTGGATCCAACTCCAAGGGGTAACCAAGCTCAGCCACAACCACAAGGTCCAGGTCAAAGTCAGTCTCAGGCACCATCGACTGGTTTACTTCCTAACCCATCCATGCCTGCTCACCCGCCCCCCAGAATGAATGGTCCTGTACCACCTGCGCCTAATCTACCACACCCACCAGTGAATGGTCCTGCCCTCTTACCCTCACCAACTTCACAGTTCTTATTGCCATCCCCAACAGGTTTCATGAACCTGTTGTCCCCAAGGTCACCTTATCCATTGCTTTCACCTGGGATGCAGTTTCCTCCACCACTGACCCCCAATTTTCAGTTTTCACCCATGGCCCAATCAGGGATATTAGGTCCAGGGCCTCAACCTCCACCCTCTCCGGGTTATTTGTTTCCATTATCTCCTTCGGGGTTTTTCCCCATTTCAAGTCCAAGATGGAGGGAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009960 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0040008 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0061458 GO:0065007 GO:0080050 GO:0080113 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

311

Amino Acids

33.77

Weight (kDa)

11.1

Isoelectric Point (pI)

89.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32610 AT1G32610 AT1G32610 AT2G35230 AT2G35230 AT2G35230
fragaria_vesca	FvH4_4g21960
malus_domestica	MD06G1101200.v1.1 MD14G1120900.v1.1
prunus_persica	Prupe.5G036600_v2.0.a1 Prupe.5G036600_v2.0.a1 Prupe.5G036600_v2.0.a1
pyrus_communis	pycom06g09640
rosa_chinensis	RchiOBHm_Chr7g0209711
rosa_laevigata	RLG00000003100
rosa_multiflora	Rmu_sc0002616.1_g000013
rosa_roxburghii	Rroxscaffold_3G00249130
rosa_rugosa	Rorug07G0115600
rosa_samantha	Rh7AG249300 Rh7BG243200 Rh7CG265300 Rh7DG255100
rosa_wichuraiana	Rw7G021130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	637
Acc36I	ACCTGC	1 cut(s)	637
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	2 cut(s)	465, 553
AccB7I	CCANNNNNTGG	2 cut(s)	563, 659
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	9 cut(s)	12, 105, 157, 224, 244, 302, 332, 398, 599
AclWI	GGATC	2 cut(s)	482, 495
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	2 cut(s)	467, 624
AfiI	CCNNNNNNNGG	5 cut(s)	18, 563, 659, 825, 863
AgsI	TTSAA	2 cut(s)	473, 909
AjnI	CCWGG	3 cut(s)	532, 763, 838
AloI	GAACNNNNNNTCC	2 cut(s)	716, 748
AluBI	AGCT	4 cut(s)	175, 326, 437, 512
AluI	AGCT	4 cut(s)	175, 326, 437, 512
Alw26I	GTCTC	3 cut(s)	408, 447, 552
AlwI	GGATC	2 cut(s)	482, 495
AoxI	GGCC	3 cut(s)	260, 816, 842
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	152
Asp718I	GGTACC	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	634
AspS9I	GGNCC	6 cut(s)	530, 617, 662, 817, 836, 842
AsuC2I	CCSGG	1 cut(s)	864
AsuHPI	GGTGA	6 cut(s)	375, 587, 672, 735, 753, 801
AvaII	GGWCC	4 cut(s)	530, 617, 662, 836
AxyI	CCTNAGG	1 cut(s)	126
BamHI	GGATCC	1 cut(s)	487
BanI	GGYRCC	2 cut(s)	465, 553
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	6 cut(s)	196, 388, 565, 589, 712, 912
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	3 cut(s)	534, 765, 840
BclI	TGATCA	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	864
BcoDI	GTCTC	3 cut(s)	408, 447, 552
BfaI	CTAG	2 cut(s)	108, 207
BfuAI	ACCTGC	1 cut(s)	637
BisI	GCNGC	3 cut(s)	105, 173, 398
BlpI	GCTNAGC	1 cut(s)	513
BlsI	GCNGC	3 cut(s)	106, 174, 399
Bme1390I	CCNGG	4 cut(s)	534, 765, 840, 864
Bme18I	GGWCC	4 cut(s)	530, 617, 662, 836
BmgT120I	GGNCC	6 cut(s)	530, 617, 662, 817, 836, 842
BmiI	GGNNCC	5 cut(s)	312, 339, 467, 489, 555
BmrFI	CCNGG	4 cut(s)	534, 765, 840, 864
BmsI	GCATC	3 cut(s)	384, 471, 759
Bpu10I	CCTNAGC	1 cut(s)	120
Bpu1102I	GCTNAGC	1 cut(s)	513
BpuMI	CCSGG	1 cut(s)	864
BsaJI	CCNNGG	5 cut(s)	497, 737, 764, 813, 839
Bsc4I	CCNNNNNNNGG	5 cut(s)	18, 563, 659, 825, 863
Bse1I	ACTGG	4 cut(s)	184, 293, 568, 653
Bse21I	CCTNAGG	1 cut(s)	126
Bse3DI	GCAATG	2 cut(s)	74, 752
BseBI	CCWGG	3 cut(s)	534, 765, 840
BseDI	CCNNGG	5 cut(s)	497, 737, 764, 813, 839
BseGI	GGATG	4 cut(s)	316, 581, 704, 774
BseLI	CCNNNNNNNGG	5 cut(s)	18, 563, 659, 825, 863
BseMI	GCAATG	2 cut(s)	74, 752
BseMII	CTCAG	8 cut(s)	134, 140, 230, 380, 429, 465, 527, 563
BseNI	ACTGG	4 cut(s)	184, 293, 568, 653
BseRI	GAGGAG	3 cut(s)	204, 255, 303
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	3 cut(s)	262, 818, 844
BshNI	GGYRCC	2 cut(s)	465, 553
BsiSI	CCGG	2 cut(s)	308, 863
BslFI	GGGAC	1 cut(s)	718
BslI	CCNNNNNNNGG	5 cut(s)	18, 563, 659, 825, 863
BsmAI	GTCTC	3 cut(s)	408, 447, 552
BsmFI	GGGAC	1 cut(s)	718
BsnI	GGCC	3 cut(s)	262, 818, 844
Bsp143I	GATC	2 cut(s)	28, 487
Bsp1720I	GCTNAGC	1 cut(s)	513
Bsp19I	CCATGG	1 cut(s)	813
BspACI	CCGC	9 cut(s)	12, 105, 157, 224, 244, 302, 332, 398, 599
BspANI	GGCC	3 cut(s)	262, 818, 844
BspCNI	CTCAG	8 cut(s)	133, 139, 229, 379, 430, 464, 526, 562
BspHI	TCATGA	2 cut(s)	357, 720
BspLI	GGNNCC	5 cut(s)	312, 339, 467, 489, 555
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	2 cut(s)	482, 495
BspT107I	GGYRCC	2 cut(s)	465, 553
BsrDI	GCAATG	2 cut(s)	74, 752
BsrI	ACTGG	4 cut(s)	184, 293, 568, 653
BssECI	CCNNGG	5 cut(s)	497, 737, 764, 813, 839
BssMI	GATC	2 cut(s)	28, 487
BssNAI	GTATAC	1 cut(s)	133
BssT1I	CCWWGG	3 cut(s)	497, 737, 813
Bst1107I	GTATAC	1 cut(s)	133
Bst2UI	CCWGG	3 cut(s)	534, 765, 840
Bst4CI	ACNGT	1 cut(s)	693
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	8 cut(s)	120, 126, 216, 366, 438, 451, 513, 549
BstDSI	CCRYGG	1 cut(s)	813
BstEII	GGTNACC	2 cut(s)	503, 741
BstF5I	GGATG	4 cut(s)	316, 581, 704, 774
BstHHI	GCGC	1 cut(s)	634
BstKTI	GATC	2 cut(s)	31, 490
BstMAI	GTCTC	3 cut(s)	408, 447, 552
BstMBI	GATC	2 cut(s)	28, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 434
BstNI	CCWGG	3 cut(s)	534, 765, 840
BstPI	GGTNACC	2 cut(s)	503, 741
BstSCI	CCNGG	4 cut(s)	532, 763, 838, 862
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BstZ17I	GTATAC	1 cut(s)	133
Bsu36I	CCTNAGG	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	262, 818, 844
BtgI	CCRYGG	1 cut(s)	813
BtsCI	GGATG	4 cut(s)	316, 581, 704, 774
BtsIMutI	CAGTG	2 cut(s)	660, 785
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	1 cut(s)	591
CciI	TCATGA	2 cut(s)	357, 720
CfoI	GCGC	1 cut(s)	634
Cfr13I	GGNCC	6 cut(s)	530, 617, 662, 817, 836, 842
Csp6I	GTAC	2 cut(s)	466, 623
CviAII	CATG	5 cut(s)	358, 410, 586, 721, 814
CviQI	GTAC	2 cut(s)	466, 623
DdeI	CTNAG	8 cut(s)	120, 126, 216, 366, 438, 451, 513, 549
DpnI	GATC	2 cut(s)	30, 489
DpnII	GATC	2 cut(s)	28, 487
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	213
Eco130I	CCWWGG	3 cut(s)	497, 737, 813
Eco47I	GGWCC	4 cut(s)	530, 617, 662, 836
Eco57I	CTGAAG	1 cut(s)	306
Eco81I	CCTNAGG	1 cut(s)	126
Eco91I	GGTNACC	2 cut(s)	503, 741
EcoO109I	RGGNCCY	1 cut(s)	842
EcoO65I	GGTNACC	2 cut(s)	503, 741
EcoRI	GAATTC	1 cut(s)	255
EcoRII	CCWGG	3 cut(s)	532, 763, 838
EcoT14I	CCWWGG	3 cut(s)	497, 737, 813
ErhI	CCWWGG	3 cut(s)	497, 737, 813
FaeI	CATG	5 cut(s)	361, 413, 589, 724, 817
FalI	AAGNNNNNCTT	2 cut(s)	730, 762
FaqI	GGGAC	1 cut(s)	718
FatI	CATG	5 cut(s)	357, 409, 585, 720, 813
FauI	CCCGC	1 cut(s)	606
FbaI	TGATCA	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	3 cut(s)	105, 173, 398
FokI	GGATG	4 cut(s)	303, 568, 691, 781
Fsp4HI	GCNGC	3 cut(s)	105, 173, 398
FspBI	CTAG	2 cut(s)	108, 207
GlaI	GCGC	1 cut(s)	633
GluI	GCNGC	3 cut(s)	105, 173, 398
HaeIII	GGCC	3 cut(s)	262, 818, 844
HapII	CCGG	2 cut(s)	308, 863
HhaI	GCGC	1 cut(s)	634
Hin1II	CATG	5 cut(s)	361, 413, 589, 724, 817
Hin6I	GCGC	1 cut(s)	632
HinP1I	GCGC	1 cut(s)	632
HinfI	GANTC	5 cut(s)	70, 220, 364, 416, 440
HpaII	CCGG	2 cut(s)	308, 863
HphI	GGTGA	6 cut(s)	375, 587, 672, 735, 753, 801
Hpy166II	GTNNAC	3 cut(s)	43, 133, 569
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	2 cut(s)	358, 721
Hpy8I	GTNNAC	3 cut(s)	43, 133, 569
HpyAV	CCTTC	3 cut(s)	330, 479, 897
HpyCH4III	ACNGT	1 cut(s)	693
HpyCH4V	TGCA	3 cut(s)	79, 250, 772
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 434
HpyF3I	CTNAG	8 cut(s)	120, 126, 216, 366, 438, 451, 513, 549
Hsp92II	CATG	5 cut(s)	361, 413, 589, 724, 817
HspAI	GCGC	1 cut(s)	632
KpnI	GGTACC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	28, 487
LmnI	GCTCC	2 cut(s)	316, 331
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	3 cut(s)	384, 471, 759
MaeI	CTAG	2 cut(s)	108, 207
MaeIII	GTNAC	2 cut(s)	503, 741
MalI	GATC	2 cut(s)	30, 489
MboI	GATC	2 cut(s)	28, 487
MboII	GAAGA	1 cut(s)	79
MflI	RGATCY	1 cut(s)	487
MluCI	AATT	4 cut(s)	48, 88, 255, 796
MlyI	GAGTC	4 cut(s)	79, 358, 410, 449
MmeI	TCCRAC	1 cut(s)	515
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	1 cut(s)	272
MslI	CAYNNNNRTG	1 cut(s)	36
MspA1I	CMGCKG	2 cut(s)	334, 437
MspI	CCGG	2 cut(s)	308, 863
MspR9I	CCNGG	4 cut(s)	534, 765, 840, 864
MvaI	CCWGG	3 cut(s)	534, 765, 840
MwoI	GCNNNNNNNGC	2 cut(s)	101, 434
NciI	CCSGG	1 cut(s)	864
NcoI	CCATGG	1 cut(s)	813
NdeII	GATC	2 cut(s)	28, 487
NlaIII	CATG	5 cut(s)	361, 413, 589, 724, 817
NlaIV	GGNNCC	5 cut(s)	312, 339, 467, 489, 555
NmuCI	GTSAC	1 cut(s)	741
PagI	TCATGA	2 cut(s)	357, 720
PaqCI	CACCTGC	1 cut(s)	637
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	220
PflMI	CCANNNNNTGG	2 cut(s)	563, 659
PkrI	GCNGC	3 cut(s)	106, 174, 399
PleI	GAGTC	4 cut(s)	78, 358, 410, 448
PpsI	GAGTC	4 cut(s)	78, 358, 410, 448
Psp6I	CCWGG	3 cut(s)	532, 763, 838
PspEI	GGTNACC	2 cut(s)	503, 741
PspGI	CCWGG	3 cut(s)	532, 763, 838
PspN4I	GGNNCC	5 cut(s)	312, 339, 467, 489, 555
PspPI	GGNCC	6 cut(s)	530, 617, 662, 817, 836, 842
PsuI	RGATCY	1 cut(s)	487
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	2 cut(s)	467, 624
RsaNI	GTAC	2 cut(s)	466, 623
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	3 cut(s)	105, 173, 398
Sau3AI	GATC	2 cut(s)	28, 487
Sau96I	GGNCC	6 cut(s)	530, 617, 662, 817, 836, 842
SchI	GAGTC	4 cut(s)	79, 358, 410, 449
ScrFI	CCNGG	4 cut(s)	534, 765, 840, 864
SfaNI	GCATC	3 cut(s)	384, 471, 759
SinI	GGWCC	4 cut(s)	530, 617, 662, 836
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	4 cut(s)	48, 88, 255, 796
SsiI	CCGC	9 cut(s)	12, 105, 157, 224, 244, 302, 332, 398, 599
SspMI	CTAG	2 cut(s)	108, 207
StyD4I	CCNGG	4 cut(s)	532, 763, 838, 862
StyI	CCWWGG	3 cut(s)	497, 737, 813
TaaI	ACNGT	1 cut(s)	693
TaqI	TCGA	2 cut(s)	479, 560
TasI	AATT	4 cut(s)	48, 88, 255, 796
TauI	GCSGC	2 cut(s)	107, 400
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	2 cut(s)	660, 792
TseFI	GTSAC	1 cut(s)	741
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	741
TspDTI	ATGAA	4 cut(s)	346, 626, 709, 737
TspRI	CASTG	2 cut(s)	660, 792
Van91I	CCANNNNNTGG	2 cut(s)	563, 659
VpaK11BI	GGWCC	4 cut(s)	530, 617, 662, 836
XapI	RAATTY	1 cut(s)	255
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	2 cut(s)	108, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.