Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002616.1

Orthogroup ID

OG0008698

Physical Location & Seq

Genomic Coordinates Reverse (-)

42436 .. 43377

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002616.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atggataactccacaaataggcatactgatcatttgggggtgaacaagattgggaaaaatataaggaagagtcctttgcaccagcccaatttcggtaatgctgctgctagtgctgctaatgctgtgaatgctgctaggcaacagcctcagcctcaggtgtacaacataagcaagaacgactttaggaacattgttcagcagcttactggttcgccatcacaagatcctttgccgaggcctccccagggtccgcccaaaccccaaagtatgcggttgcagaagatccgacctcctccattgacacctatcaacagacctgtagtcccacctccagtccctgtacaggcagccccgccgcctgttccttacaataatggctttgttaggcctccccactttggacaaccatcaccaacaccgatgccaccgtttccacctggagattcaatgtggccgaatacagctgactctccaatctcagcatatatgcggtaccttcaaagttcaatgatggatccaactccaaggggaaaccagcctcagcctcaaccacaaggtccaggtcaaattcaaggacagccaccatcaactggtttactaccccacccatccatccctgcgcagccgcccccaagaatgaatggccctgtaccacctgcgcctaatctcccatccccgcaaatgggtggtcctccactgttaccttctccaacttcccagttcctattgccatccccaaccggttacaactacttgttatctccacggtcaccttatccgttgctttcacctgggacacagtttcctccactgacccccaattttcagttttcacaatcagggatattaggtccagggcctcaagccccaccttctccaggccttttttatcaattatctccagggttttttcccatatcaagtccacgatggaggggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009960 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0040008 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0061458 GO:0065007 GO:0080050 GO:0080113 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

313

Amino Acids

33.63

Weight (kDa)

10.8

Isoelectric Point (pI)

87.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32610 AT1G32610 AT1G32610 AT2G35230 AT2G35230 AT2G35230
fragaria_vesca	FvH4_4g21960
malus_domestica	MD06G1101200.v1.1 MD14G1120900.v1.1
prunus_persica	Prupe.5G036600_v2.0.a1 Prupe.5G036600_v2.0.a1 Prupe.5G036600_v2.0.a1
pyrus_communis	pycom06g09640
rosa_chinensis	RchiOBHm_Chr7g0209711
rosa_laevigata	RLG00000003100
rosa_multiflora	Rmu_sc0002616.1_g000013
rosa_roxburghii	Rroxscaffold_3G00249130
rosa_rugosa	Rorug07G0115600
rosa_samantha	Rh7AG249300 Rh7BG243200 Rh7CG265300 Rh7DG255100
rosa_wichuraiana	Rw7G021130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	664
Acc16I	TGCGCA	1 cut(s)	621
Acc36I	ACCTGC	1 cut(s)	664
Acc65I	GGTACC	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	492
AccB7I	CCANNNNNTGG	1 cut(s)	590
AciI	CCGC	7 cut(s)	251, 271, 353, 356, 490, 626, 677
AclWI	GGATC	4 cut(s)	218, 277, 509, 522
AcoI	YGGCCR	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	567
AfaI	GTAC	4 cut(s)	161, 342, 494, 651
AfiI	CCNNNNNNNGG	9 cut(s)	18, 92, 245, 343, 398, 590, 682, 683, 878
AgeI	ACCGGT	1 cut(s)	740
AgsI	TTSAA	4 cut(s)	447, 500, 507, 572
AhdI	GACNNNNNGTC	1 cut(s)	320
AjnI	CCWGG	7 cut(s)	243, 436, 559, 790, 853, 877, 901
AluBI	AGCT	2 cut(s)	202, 464
AluI	AGCT	2 cut(s)	202, 464
AlwI	GGATC	4 cut(s)	218, 277, 509, 522
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	6 cut(s)	236, 386, 452, 643, 857, 880
ApeKI	GCWGC	7 cut(s)	101, 104, 113, 131, 199, 347, 622
ApoI	RAATTY	1 cut(s)	567
ArsI	GACNNNNNNTTYG	2 cut(s)	673, 705
AsiGI	ACCGGT	1 cut(s)	740
Asp718I	GGTACC	1 cut(s)	492
AspLEI	GCGC	2 cut(s)	622, 661
AspS9I	GGNCC	6 cut(s)	248, 557, 644, 689, 851, 857
AsuHPI	GGTGA	4 cut(s)	52, 402, 762, 780
AvaII	GGWCC	4 cut(s)	248, 557, 689, 851
AxyI	CCTNAGG	1 cut(s)	153
BamHI	GGATCC	1 cut(s)	514
BanI	GGYRCC	1 cut(s)	492
BbvCI	CCTCAGC	2 cut(s)	147, 540
BbvI	GCAGC	7 cut(s)	88, 91, 100, 118, 211, 359, 634
BccI	CCATC	9 cut(s)	223, 415, 505, 592, 616, 620, 679, 739, 924
BciT130I	CCWGG	7 cut(s)	245, 438, 561, 792, 855, 879, 903
BclI	TGATCA	1 cut(s)	28
BfaI	CTAG	2 cut(s)	108, 135
BfmI	CTRYAG	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	664
BisI	GCNGC	9 cut(s)	102, 105, 114, 132, 200, 348, 356, 623, 626
BlsI	GCNGC	9 cut(s)	103, 106, 115, 133, 201, 349, 357, 624, 627
Bme1390I	CCNGG	7 cut(s)	245, 438, 561, 792, 855, 879, 903
Bme18I	GGWCC	4 cut(s)	248, 557, 689, 851
BmeRI	GACNNNNNGTC	1 cut(s)	320
BmgT120I	GGNCC	6 cut(s)	248, 557, 644, 689, 851, 857
BmiI	GGNNCC	3 cut(s)	249, 494, 516
BmrFI	CCNGG	7 cut(s)	245, 438, 561, 792, 855, 879, 903
BmrI	ACTGGG	1 cut(s)	712
BmsI	GCATC	1 cut(s)	411
BmuI	ACTGGG	1 cut(s)	712
BpmI	CTGGAG	4 cut(s)	315, 459, 861, 885
Bpu10I	CCTNAGC	2 cut(s)	147, 540
BpuEI	CTTGAG	1 cut(s)	846
BsaJI	CCNNGG	8 cut(s)	233, 243, 244, 524, 764, 791, 854, 902
BsaWI	WCCGGW	1 cut(s)	740
Bsc4I	CCNNNNNNNGG	9 cut(s)	18, 92, 245, 343, 398, 590, 682, 683, 878
Bse118I	RCCGGY	1 cut(s)	740
Bse1I	ACTGG	4 cut(s)	211, 332, 595, 718
Bse21I	CCTNAGG	1 cut(s)	153
BseBI	CCWGG	7 cut(s)	245, 438, 561, 792, 855, 879, 903
BseDI	CCNNGG	8 cut(s)	233, 243, 244, 524, 764, 791, 854, 902
BseGI	GGATG	4 cut(s)	608, 612, 671, 731
BseLI	CCNNNNNNNGG	9 cut(s)	18, 92, 245, 343, 398, 590, 682, 683, 878
BseMII	CTCAG	4 cut(s)	161, 167, 492, 554
BseNI	ACTGG	4 cut(s)	211, 332, 595, 718
BseRI	GAGGAG	1 cut(s)	282
BseXI	GCAGC	7 cut(s)	88, 91, 100, 118, 211, 359, 634
BshFI	GGCC	6 cut(s)	238, 388, 454, 645, 859, 882
BshNI	GGYRCC	1 cut(s)	492
BshTI	ACCGGT	1 cut(s)	740
BsiSI	CCGG	1 cut(s)	741
BslFI	GGGAC	3 cut(s)	308, 320, 808
BslI	CCNNNNNNNGG	9 cut(s)	18, 92, 245, 343, 398, 590, 682, 683, 878
BsmFI	GGGAC	3 cut(s)	308, 320, 808
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	6 cut(s)	238, 388, 454, 645, 859, 882
Bsp1407I	TGTACA	2 cut(s)	159, 340
Bsp143I	GATC	4 cut(s)	28, 223, 282, 514
BspACI	CCGC	7 cut(s)	251, 271, 353, 356, 490, 626, 677
BspANI	GGCC	6 cut(s)	238, 388, 454, 645, 859, 882
BspCNI	CTCAG	4 cut(s)	160, 166, 491, 553
BspLI	GGNNCC	3 cut(s)	249, 494, 516
BspMI	ACCTGC	1 cut(s)	664
BspPI	GGATC	4 cut(s)	218, 277, 509, 522
BspT107I	GGYRCC	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	740
BsrGI	TGTACA	2 cut(s)	159, 340
BsrI	ACTGG	4 cut(s)	211, 332, 595, 718
BssAI	RCCGGY	1 cut(s)	740
BssECI	CCNNGG	8 cut(s)	233, 243, 244, 524, 764, 791, 854, 902
BssMI	GATC	4 cut(s)	28, 223, 282, 514
BssT1I	CCWWGG	1 cut(s)	524
Bst2UI	CCWGG	7 cut(s)	245, 438, 561, 792, 855, 879, 903
Bst4CI	ACNGT	4 cut(s)	429, 699, 768, 801
Bst6I	CTCTTC	1 cut(s)	62
BstAUI	TGTACA	2 cut(s)	159, 340
BstDEI	CTNAG	4 cut(s)	147, 153, 478, 540
BstDSI	CCRYGG	1 cut(s)	764
BstEII	GGTNACC	1 cut(s)	768
BstENI	CCTNNNNNAGG	1 cut(s)	876
BstF5I	GGATG	4 cut(s)	608, 612, 671, 731
BstHHI	GCGC	2 cut(s)	622, 661
BstKTI	GATC	4 cut(s)	31, 226, 285, 517
BstMBI	GATC	4 cut(s)	28, 223, 282, 514
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 113, 119, 128
BstNI	CCWGG	7 cut(s)	245, 438, 561, 792, 855, 879, 903
BstPI	GGTNACC	1 cut(s)	768
BstSCI	CCNGG	7 cut(s)	243, 436, 559, 790, 853, 877, 901
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	7 cut(s)	88, 91, 100, 118, 211, 359, 634
BstX2I	RGATCY	3 cut(s)	223, 282, 514
BstYI	RGATCY	3 cut(s)	223, 282, 514
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	6 cut(s)	238, 388, 454, 645, 859, 882
BtgI	CCRYGG	1 cut(s)	764
BtsCI	GGATG	4 cut(s)	608, 612, 671, 731
BtsIMutI	CAGTG	2 cut(s)	695, 809
BveI	ACCTGC	1 cut(s)	664
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	2 cut(s)	622, 661
Cfr10I	RCCGGY	1 cut(s)	740
Cfr13I	GGNCC	6 cut(s)	248, 557, 644, 689, 851, 857
Csp6I	GTAC	4 cut(s)	160, 341, 493, 650
CspAI	ACCGGT	1 cut(s)	740
CviQI	GTAC	4 cut(s)	160, 341, 493, 650
DdeI	CTNAG	4 cut(s)	147, 153, 478, 540
DpnI	GATC	4 cut(s)	30, 225, 284, 516
DpnII	GATC	4 cut(s)	28, 223, 282, 514
DriI	GACNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	452
Eam1104I	CTCTTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	524
Eco147I	AGGCCT	3 cut(s)	238, 388, 882
Eco47I	GGWCC	4 cut(s)	248, 557, 689, 851
Eco81I	CCTNAGG	1 cut(s)	153
Eco91I	GGTNACC	1 cut(s)	768
EcoNI	CCTNNNNNAGG	1 cut(s)	876
EcoO109I	RGGNCCY	1 cut(s)	857
EcoO65I	GGTNACC	1 cut(s)	768
EcoRII	CCWGG	7 cut(s)	243, 436, 559, 790, 853, 877, 901
EcoT14I	CCWWGG	1 cut(s)	524
ErhI	CCWWGG	1 cut(s)	524
FaiI	YATR	8 cut(s)	24, 62, 167, 269, 484, 486, 488, 917
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	3 cut(s)	308, 320, 808
FauI	CCCGC	2 cut(s)	360, 684
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	9 cut(s)	102, 105, 114, 132, 200, 348, 356, 623, 626
FokI	GGATG	4 cut(s)	595, 599, 658, 718
Fsp4HI	GCNGC	9 cut(s)	102, 105, 114, 132, 200, 348, 356, 623, 626
FspBI	CTAG	2 cut(s)	108, 135
FspI	TGCGCA	1 cut(s)	621
GlaI	GCGC	2 cut(s)	621, 660
GluI	GCNGC	9 cut(s)	102, 105, 114, 132, 200, 348, 356, 623, 626
GsuI	CTGGAG	4 cut(s)	315, 459, 861, 885
HaeIII	GGCC	6 cut(s)	238, 388, 454, 645, 859, 882
HapII	CCGG	1 cut(s)	741
HhaI	GCGC	2 cut(s)	622, 661
Hin6I	GCGC	2 cut(s)	620, 659
HinP1I	GCGC	2 cut(s)	620, 659
HinfI	GANTC	3 cut(s)	70, 443, 467
HpaII	CCGG	1 cut(s)	741
HphI	GGTGA	4 cut(s)	52, 402, 762, 780
Hpy166II	GTNNAC	4 cut(s)	43, 160, 596, 926
Hpy188I	TCNGA	1 cut(s)	287
Hpy8I	GTNNAC	4 cut(s)	43, 160, 596, 926
HpyAV	CCTTC	3 cut(s)	506, 714, 882
HpyCH4III	ACNGT	4 cut(s)	429, 699, 768, 801
HpyCH4V	TGCA	2 cut(s)	79, 277
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 113, 119, 128
HpyF3I	CTNAG	4 cut(s)	147, 153, 478, 540
HspAI	GCGC	2 cut(s)	620, 659
KpnI	GGTACC	1 cut(s)	496
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	4 cut(s)	28, 223, 282, 514
Lsp1109I	GCAGC	7 cut(s)	88, 91, 100, 118, 211, 359, 634
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	2 cut(s)	108, 135
MaeIII	GTNAC	3 cut(s)	699, 743, 768
MalI	GATC	4 cut(s)	30, 225, 284, 516
MboI	GATC	4 cut(s)	28, 223, 282, 514
MboII	GAAGA	2 cut(s)	79, 292
MflI	RGATCY	3 cut(s)	223, 282, 514
MluCI	AATT	4 cut(s)	88, 567, 820, 893
MlyI	GAGTC	2 cut(s)	79, 461
MmeI	TCCRAC	3 cut(s)	310, 542, 734
MseI	TTAA	1 cut(s)	940
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	1 cut(s)	741
MspR9I	CCNGG	7 cut(s)	245, 438, 561, 792, 855, 879, 903
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	7 cut(s)	245, 438, 561, 792, 855, 879, 903
MwoI	GCNNNNNNNGC	4 cut(s)	110, 113, 119, 128
NdeII	GATC	4 cut(s)	28, 223, 282, 514
NlaIV	GGNNCC	3 cut(s)	249, 494, 516
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	768
NsbI	TGCGCA	1 cut(s)	621
PaqCI	CACCTGC	1 cut(s)	664
PasI	CCCWGGG	1 cut(s)	244
PceI	AGGCCT	3 cut(s)	238, 388, 882
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	590
PinAI	ACCGGT	1 cut(s)	740
PkrI	GCNGC	9 cut(s)	103, 106, 115, 133, 201, 349, 357, 624, 627
PleI	GAGTC	2 cut(s)	78, 461
PpsI	GAGTC	2 cut(s)	78, 461
Psp6I	CCWGG	7 cut(s)	243, 436, 559, 790, 853, 877, 901
PspEI	GGTNACC	1 cut(s)	768
PspGI	CCWGG	7 cut(s)	243, 436, 559, 790, 853, 877, 901
PspN4I	GGNNCC	3 cut(s)	249, 494, 516
PspPI	GGNCC	6 cut(s)	248, 557, 644, 689, 851, 857
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	3 cut(s)	223, 282, 514
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	4 cut(s)	161, 342, 494, 651
RsaNI	GTAC	4 cut(s)	160, 341, 493, 650
SaqAI	TTAA	1 cut(s)	940
SatI	GCNGC	9 cut(s)	102, 105, 114, 132, 200, 348, 356, 623, 626
Sau3AI	GATC	4 cut(s)	28, 223, 282, 514
Sau96I	GGNCC	6 cut(s)	248, 557, 644, 689, 851, 857
SchI	GAGTC	2 cut(s)	79, 461
ScrFI	CCNGG	7 cut(s)	245, 438, 561, 792, 855, 879, 903
SfaNI	GCATC	1 cut(s)	411
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	4 cut(s)	248, 557, 689, 851
SmlI	CTYRAG	1 cut(s)	861
SmoI	CTYRAG	1 cut(s)	861
Sse9I	AATT	4 cut(s)	88, 567, 820, 893
SseBI	AGGCCT	3 cut(s)	238, 388, 882
SsiI	CCGC	7 cut(s)	251, 271, 353, 356, 490, 626, 677
SspMI	CTAG	2 cut(s)	108, 135
StuI	AGGCCT	3 cut(s)	238, 388, 882
StyD4I	CCNGG	7 cut(s)	243, 436, 559, 790, 853, 877, 901
StyI	CCWWGG	1 cut(s)	524
TaaI	ACNGT	4 cut(s)	429, 699, 768, 801
TasI	AATT	4 cut(s)	88, 567, 820, 893
TatI	WGTACW	2 cut(s)	159, 340
TauI	GCSGC	2 cut(s)	358, 628
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	1 cut(s)	940
Tru9I	TTAA	1 cut(s)	940
TscAI	CASTG	2 cut(s)	702, 816
TseFI	GTSAC	1 cut(s)	768
TseI	GCWGC	7 cut(s)	101, 104, 113, 131, 199, 347, 622
Tsp45I	GTSAC	1 cut(s)	768
TspDTI	ATGAA	1 cut(s)	653
TspGWI	ACGGA	1 cut(s)	768
TspRI	CASTG	2 cut(s)	702, 816
Van91I	CCANNNNNTGG	1 cut(s)	590
VpaK11BI	GGWCC	4 cut(s)	248, 557, 689, 851
XagI	CCTNNNNNAGG	1 cut(s)	876
XapI	RAATTY	1 cut(s)	567
XspI	CTAG	2 cut(s)	108, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.