AT2G35540

DNAJ heat shock N-terminal domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
14927071 .. 14929134
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35540.1

Sequence Viewer

Length: 1773 bp
ATGGCTTCTGGATCAGACTCAGAAGTAGAAAAGGAATCCATACACCACAAAGCACTAGCGGAATCGAGTTTCAATTGCGGTGATTTGATGTCGGCCTTAACTCACGCGCGGAAAGCTCTCAGCTTGTCTCCGAACACGGAAGGTTTATCCGCCATGGTCACCGCTTTCGAGATCATCAGCTCCGCCGCCACAGTCGCCGGAGGTTTTCCGGAATGGTACAAGGTTCTAAAGGTAGAGCCTTTTTCTCATATTAATACCATAAAACAACAGTATAGGAAGCTAGCTTTGGTGTTGCATCCTGATAAGAATCCGTATGTGGGGTGTGAGGAGGGGTTCAAACTTTTGAATGAGGCCTTTAGGGTTTTCTCTGATAAGGTTAGGAGGACTGAGTATGATATGAAGTTGAGGATTAGGATTCAGGGGGAAATGGTTAGCGGTGGTTCTGGTGGTGATGAAACGTCAACGTTTTCGGCGGTTTGTTCGGGTTGTAGGTCGGTGCATAAGTTTGATAGGAAGTATTTAGGACAAAATTTGATGTGCCCTACTTGCAAGAATAGTTTTGAGGCGAAGGAAGTTGAGAAGGAAGAAGAGGGTAGAGAAAATGGAGCTTGTACTTCCAAGATCATAACATATAGTAGGAGGAAGAGGCCTGTTGATAGCGATGGTGAAAGTCTGATAAAAGAAGTTGAGACAGGGGAGATGAGTCAGGAAGCAGCAGAAGCTATTAATGTATTTGAGGGGTCGGATGAAGAGGATGAAGGGATGATGACTTTGGCAGAAATGCAAGCGGTGATAAAGAGAAATAAGTCGAAGGTGAATTCGAAGATCACTGAGAAAGATAGCAGTGGAGAAGAAAACATGGGAAGGGAAACGCAGAAGAGATCTTTAGCTGATGCCTCCATGACTGAAACGTTAAGGGAGATGAGTACTAACGCAGTGAATAATAAACAAGAAGTTTTAAAGAATAGGAAGAATATAAAGAAGAAGAAGATGGCGAACCACAAGGATTTAACTGAGATAGTGGATTTAGAATACGTGCCTCGGGTTGATAGGAAGAGGGATCGTGGTAAGTTAAGCCAAGAAATGTATATGGAAGACGAGGATTTTGAACTGTATGATTTTGATAAGGACCGGATGCCGAGGAGCTTCAAGAAAGGGCAGATTTGGGCGATATATGATGGTGGTGATGACAAAATGCCTCGGAGTTACTGTTTAGTTAGTGAAGTAGTCTCTTTGAATCCTTTTAAGGTATGGATCAGCTGGTTGGATTTTGAGAGCGAGAAACTAATCTCTTGGATGAAGATTAGTTCTTCTCATATGCCTTGTGGTAGGTTCCGGGTTTCAGAGAAAGCTTTGATAGAACAAGTGAAACCATTCTCTCACCTTGTCAACTGCGAAAGGGCTGCACGAGAAATATACCAAATATATCCAAAGAAAGGCTCGGTTTGGGCAGTCTACTCAGAGACAAATCCAGGTCTTCAGAGAAGAAAGACCAGACGCTATGAGATTGTCGTATGCTTGACAATGTATACTGATGCATATGGATTAAGTGTAGCATATTTGGAGAAGGTTAACGACTATAGCAACCTGTTCAAGAGACGGGATTACGGGTATAATGCAGTCAGGTGGGTCGAGAAAGAAGATGTTGCAGCCTTGCTCTCTCATCAGATTCCGGCCAAGAAGCTGCCTGAAGATGAATCTGGAGCTGATCTGAAAGAGTCTTGGGTGCTTGATCTTGCTTCTGTTCCTCCTGATTTGGTTTCTGCCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

590

Amino Acids

67.09

Weight (kDa)

6.19

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 71 - 132 5.4e-17 DnaJ domain
DUF3444 PF11926 361 - 565 3.6e-58 Domain of unknown function (DUF3444)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 1455, 1529
AccII CGCG 2 cut(s) 107, 109
AccIII TCCGGA 1 cut(s) 208
AclI AACGTT 2 cut(s) 464, 911
AclWI GGATC 3 cut(s) 19, 1068, 1262
AcoI YGGCCR 1 cut(s) 1674
AcsI RAATTY 2 cut(s) 529, 817
AcuI CTGAAG 2 cut(s) 1463, 1710
AfaI GTAC 3 cut(s) 218, 613, 928
AfiI CCNNNNNNNGG 2 cut(s) 317, 1436
AgsI TTSAA 7 cut(s) 73, 337, 346, 1109, 1150, 1237, 1594
AjnI CCWGG 1 cut(s) 1471
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
Alw26I GTCTC 5 cut(s) 132, 683, 1234, 1457, 1591
AlwI GGATC 3 cut(s) 19, 1068, 1262
Ama87I CYCGRG 1 cut(s) 1041
Aor13HI TCCGGA 1 cut(s) 208
AoxI GGCC 4 cut(s) 93, 351, 647, 1674
ApeKI GCWGC 4 cut(s) 713, 1403, 1649, 1684
ApoI RAATTY 2 cut(s) 529, 817
ArsI GACNNNNNNTTYG 2 cut(s) 1088, 1120
AseI ATTAAT 2 cut(s) 252, 726
Asp700I GAANNNNTTC 1 cut(s) 1373
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 1129
AsuC2I CCSGG 1 cut(s) 1337
AsuHPI GGTGA 8 cut(s) 92, 151, 461, 677, 802, 826, 1196, 1373
AsuII TTCGAA 1 cut(s) 821
AsuNHI GCTAGC 1 cut(s) 280
AvaI CYCGRG 1 cut(s) 1041
AvaII GGWCC 1 cut(s) 1129
BaeGI GKGCMC 1 cut(s) 542
BauI CACGAG 1 cut(s) 1407
BbsI GAAGAC 2 cut(s) 1101, 1469
BbvI GCAGC 4 cut(s) 725, 1390, 1661, 1671
BccI CCATC 3 cut(s) 656, 985, 1172
BcgI CGANNNNNNTGC 2 cut(s) 1385, 1419
BciT130I CCWGG 1 cut(s) 1473
BcnI CCSGG 1 cut(s) 1337
BcoDI GTCTC 5 cut(s) 132, 683, 1234, 1457, 1591
BfaI CTAG 2 cut(s) 56, 281
BfmI CTRYAG 1 cut(s) 1579
BglII AGATCT 1 cut(s) 881
BisI GCNGC 5 cut(s) 186, 714, 1404, 1650, 1685
BlsI GCNGC 5 cut(s) 187, 715, 1405, 1651, 1686
BmcAI AGTACT 1 cut(s) 928
Bme1390I CCNGG 2 cut(s) 1337, 1473
Bme18I GGWCC 1 cut(s) 1129
BmeT110I CYCGRG 1 cut(s) 1041
BmgT120I GGNCC 1 cut(s) 1129
BmiI GGNNCC 1 cut(s) 1334
BmrFI CCNGG 2 cut(s) 1337, 1473
BmsI GCATC 4 cut(s) 304, 883, 1125, 1525
BmtI GCTAGC 1 cut(s) 284
BpiI GAAGAC 2 cut(s) 1101, 1469
BpmI CTGGAG 1 cut(s) 1722
Bpu14I TTCGAA 1 cut(s) 821
BpuMI CCSGG 1 cut(s) 1337
BsaAI YACGTR 1 cut(s) 1036
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 4 cut(s) 153, 1040, 1139, 1199
BsaWI WCCGGW 2 cut(s) 208, 1131
BsaXI ACNNNNNCTCC 2 cut(s) 1195, 1225
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 1436
Bse8I GATNNNNATC 1 cut(s) 306
BseAI TCCGGA 1 cut(s) 208
BseBI CCWGG 1 cut(s) 1473
BseDI CCNNGG 4 cut(s) 153, 1040, 1139, 1199
BseGI GGATG 6 cut(s) 295, 751, 760, 768, 1140, 1302
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 2 cut(s) 317, 1436
BseMII CTCAG 6 cut(s) 33, 133, 378, 822, 1005, 1473
BseRI GAGGAG 2 cut(s) 341, 1156
BseSI GKGCMC 1 cut(s) 542
BseXI GCAGC 4 cut(s) 725, 1390, 1661, 1671
BsgI GTGCAG 1 cut(s) 1389
Bsh1236I CGCG 2 cut(s) 107, 109
BshFI GGCC 4 cut(s) 95, 353, 649, 1676
BsiHKCI CYCGRG 1 cut(s) 1041
BsiSI CCGG 5 cut(s) 198, 209, 1132, 1336, 1673
BslI CCNNNNNNNGG 2 cut(s) 317, 1436
BsmAI GTCTC 5 cut(s) 132, 683, 1234, 1457, 1591
BsmBI CGTCTC 1 cut(s) 1591
BsnI GGCC 4 cut(s) 95, 353, 649, 1676
BsoBI CYCGRG 1 cut(s) 1041
Bsp119I TTCGAA 1 cut(s) 821
Bsp1286I GDGCHC 1 cut(s) 542
Bsp13I TCCGGA 1 cut(s) 208
Bsp143I GATC 9 cut(s) 11, 171, 621, 825, 881, 1060, 1254, 1708, 1732
Bsp19I CCATGG 1 cut(s) 153
BspANI GGCC 4 cut(s) 95, 353, 649, 1676
BspCNI CTCAG 6 cut(s) 32, 132, 379, 823, 1006, 1472
BspEI TCCGGA 1 cut(s) 208
BspFNI CGCG 2 cut(s) 107, 109
BspLI GGNNCC 1 cut(s) 1334
BspOI GCTAGC 1 cut(s) 284
BspPI GGATC 3 cut(s) 19, 1068, 1262
BspT104I TTCGAA 1 cut(s) 821
BssECI CCNNGG 4 cut(s) 153, 1040, 1139, 1199
BssMI GATC 9 cut(s) 11, 171, 621, 825, 881, 1060, 1254, 1708, 1732
BssNAI GTATAC 1 cut(s) 1530
BssSI CACGAG 1 cut(s) 1407
BssT1I CCWWGG 1 cut(s) 153
Bst1107I GTATAC 1 cut(s) 1530
Bst2BI CACGAG 1 cut(s) 1407
Bst2UI CCWGG 1 cut(s) 1473
Bst4CI ACNGT 4 cut(s) 193, 270, 1113, 1211
Bst6I CTCTTC 5 cut(s) 582, 638, 744, 872, 1049
BstBAI YACGTR 1 cut(s) 1036
BstBI TTCGAA 1 cut(s) 821
BstC8I GCNNGC 2 cut(s) 282, 786
BstDEI CTNAG 7 cut(s) 19, 119, 387, 831, 1014, 1459, 1770
BstDSI CCRYGG 1 cut(s) 153
BstEII GGTNACC 1 cut(s) 157
BstF5I GGATG 6 cut(s) 295, 751, 760, 768, 1140, 1302
BstFNI CGCG 2 cut(s) 107, 109
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 9 cut(s) 14, 174, 624, 828, 884, 1063, 1257, 1711, 1735
BstMAI GTCTC 5 cut(s) 132, 683, 1234, 1457, 1591
BstMBI GATC 9 cut(s) 11, 171, 621, 825, 881, 1060, 1254, 1708, 1732
BstMWI GCNNNNNNNGC 4 cut(s) 113, 194, 546, 719
BstNI CCWGG 1 cut(s) 1473
BstPI GGTNACC 1 cut(s) 157
BstSCI CCNGG 2 cut(s) 1335, 1471
BstSFI CTRYAG 1 cut(s) 1579
BstSLI GKGCMC 1 cut(s) 542
BstUI CGCG 2 cut(s) 107, 109
BstV1I GCAGC 4 cut(s) 725, 1390, 1661, 1671
BstV2I GAAGAC 2 cut(s) 1101, 1469
BstX2I RGATCY 1 cut(s) 881
BstYI RGATCY 1 cut(s) 881
BstZ17I GTATAC 1 cut(s) 1530
BsuRI GGCC 4 cut(s) 95, 353, 649, 1676
BtgI CCRYGG 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 675
BtsCI GGATG 6 cut(s) 295, 751, 760, 768, 1140, 1302
BtsI GCAGTG 2 cut(s) 850, 942
BtsIMutI CAGTG 3 cut(s) 828, 850, 942
Cac8I GCNNGC 2 cut(s) 282, 786
CfoI GCGC 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 1129
CseI GACGC 1 cut(s) 1506
Csp6I GTAC 3 cut(s) 217, 612, 927
CviAII CATG 3 cut(s) 154, 859, 901
CviQI GTAC 3 cut(s) 217, 612, 927
DdeI CTNAG 7 cut(s) 19, 119, 387, 831, 1014, 1459, 1770
DpnI GATC 9 cut(s) 13, 173, 623, 827, 883, 1062, 1256, 1710, 1734
DpnII GATC 9 cut(s) 11, 171, 621, 825, 881, 1060, 1254, 1708, 1732
DraI TTTAAA 1 cut(s) 960
EaeI YGGCCR 1 cut(s) 1674
Eam1104I CTCTTC 5 cut(s) 582, 638, 744, 872, 1049
EarI CTCTTC 5 cut(s) 582, 638, 744, 872, 1049
EciI GGCGGA 2 cut(s) 139, 172
Eco130I CCWWGG 1 cut(s) 153
Eco147I AGGCCT 2 cut(s) 353, 649
Eco47I GGWCC 1 cut(s) 1129
Eco57I CTGAAG 2 cut(s) 1463, 1710
Eco88I CYCGRG 1 cut(s) 1041
Eco91I GGTNACC 1 cut(s) 157
EcoO65I GGTNACC 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 817
EcoRII CCWGG 1 cut(s) 1471
EcoT14I CCWWGG 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 1540
ErhI CCWWGG 1 cut(s) 153
Esp3I CGTCTC 1 cut(s) 1591
FaeI CATG 3 cut(s) 157, 862, 904
FatI CATG 3 cut(s) 153, 858, 900
FauNDI CATATG 2 cut(s) 1317, 1540
FblI GTMKAC 2 cut(s) 1455, 1529
Fnu4HI GCNGC 5 cut(s) 186, 714, 1404, 1650, 1685
FokI GGATG 6 cut(s) 282, 758, 767, 775, 1147, 1309
Fsp4HI GCNGC 5 cut(s) 186, 714, 1404, 1650, 1685
FspBI CTAG 2 cut(s) 56, 281
GlaI GCGC 1 cut(s) 108
GluI GCNGC 5 cut(s) 186, 714, 1404, 1650, 1685
GsuI CTGGAG 1 cut(s) 1722
HaeIII GGCC 4 cut(s) 95, 353, 649, 1676
HapII CCGG 5 cut(s) 198, 209, 1132, 1336, 1673
HgaI GACGC 1 cut(s) 1506
HhaI GCGC 1 cut(s) 109
Hin1II CATG 3 cut(s) 157, 862, 904
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HincII GTYRAC 3 cut(s) 462, 1390, 1573
HindII GTYRAC 3 cut(s) 462, 1390, 1573
HindIII AAGCTT 1 cut(s) 1350
HpaI GTTAAC 1 cut(s) 1573
HpaII CCGG 5 cut(s) 198, 209, 1132, 1336, 1673
HphI GGTGA 8 cut(s) 92, 151, 461, 677, 802, 826, 1196, 1373
Hpy166II GTNNAC 5 cut(s) 462, 1390, 1456, 1530, 1573
Hpy8I GTNNAC 5 cut(s) 462, 1390, 1456, 1530, 1573
HpyAV CCTTC 7 cut(s) 134, 562, 574, 752, 805, 858, 1561
HpyCH4III ACNGT 4 cut(s) 193, 270, 1113, 1211
HpyCH4IV ACGT 4 cut(s) 458, 464, 911, 1035
HpyCH4V TGCA 8 cut(s) 295, 499, 549, 784, 1406, 1538, 1619, 1649
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 194, 546, 719
HpyF3I CTNAG 7 cut(s) 19, 119, 387, 831, 1014, 1459, 1770
HpySE526I ACGT 4 cut(s) 458, 464, 911, 1035
Hsp92II CATG 3 cut(s) 157, 862, 904
HspAI GCGC 1 cut(s) 107
Kpn2I TCCGGA 1 cut(s) 208
KspAI GTTAAC 1 cut(s) 1573
Kzo9I GATC 9 cut(s) 11, 171, 621, 825, 881, 1060, 1254, 1708, 1732
LmnI GCTCC 4 cut(s) 185, 605, 1143, 1703
Lsp1109I GCAGC 4 cut(s) 725, 1390, 1661, 1671
LweI GCATC 4 cut(s) 304, 883, 1125, 1525
MaeI CTAG 2 cut(s) 56, 281
MaeII ACGT 4 cut(s) 458, 464, 911, 1035
MaeIII GTNAC 2 cut(s) 157, 1205
MalI GATC 9 cut(s) 13, 173, 623, 827, 883, 1062, 1256, 1710, 1734
MboI GATC 9 cut(s) 11, 171, 621, 825, 881, 1060, 1254, 1708, 1732
MfeI CAATTG 1 cut(s) 73
MflI RGATCY 1 cut(s) 881
MhlI GDGCHC 1 cut(s) 542
MluCI AATT 3 cut(s) 73, 529, 817
MlyI GAGTC 3 cut(s) 11, 712, 1727
MmeI TCCRAC 2 cut(s) 723, 1245
Mph1103I ATGCAT 1 cut(s) 1540
MroI TCCGGA 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 1373
MspA1I CMGCKG 1 cut(s) 1260
MspI CCGG 5 cut(s) 198, 209, 1132, 1336, 1673
MspR9I CCNGG 2 cut(s) 1337, 1473
MunI CAATTG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 1473
MvnI CGCG 2 cut(s) 107, 109
MwoI GCNNNNNNNGC 4 cut(s) 113, 194, 546, 719
NciI CCSGG 1 cut(s) 1337
NcoI CCATGG 1 cut(s) 153
NdeI CATATG 2 cut(s) 1317, 1540
NdeII GATC 9 cut(s) 11, 171, 621, 825, 881, 1060, 1254, 1708, 1732
NheI GCTAGC 1 cut(s) 280
NlaIII CATG 3 cut(s) 157, 862, 904
NlaIV GGNNCC 1 cut(s) 1334
NmeAIII GCCGAG 1 cut(s) 1164
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 1540
NspV TTCGAA 1 cut(s) 821
PceI AGGCCT 2 cut(s) 353, 649
PdmI GAANNNNTTC 1 cut(s) 1373
PfeI GAWTC 7 cut(s) 35, 62, 307, 415, 1237, 1669, 1697
PkrI GCNGC 5 cut(s) 187, 715, 1405, 1651, 1686
PleI GAGTC 3 cut(s) 11, 711, 1726
PpsI GAGTC 3 cut(s) 11, 711, 1726
Ppu21I YACGTR 1 cut(s) 1036
PshBI ATTAAT 2 cut(s) 252, 726
Psp1406I AACGTT 2 cut(s) 464, 911
Psp6I CCWGG 1 cut(s) 1471
PspEI GGTNACC 1 cut(s) 157
PspGI CCWGG 1 cut(s) 1471
PspN4I GGNNCC 1 cut(s) 1334
PspPI GGNCC 1 cut(s) 1129
PsuI RGATCY 1 cut(s) 881
PvuII CAGCTG 1 cut(s) 1260
RsaI GTAC 3 cut(s) 218, 613, 928
RsaNI GTAC 3 cut(s) 217, 612, 927
SatI GCNGC 5 cut(s) 186, 714, 1404, 1650, 1685
Sau3AI GATC 9 cut(s) 11, 171, 621, 825, 881, 1060, 1254, 1708, 1732
Sau96I GGNCC 1 cut(s) 1129
ScaI AGTACT 1 cut(s) 928
SchI GAGTC 3 cut(s) 11, 712, 1727
ScrFI CCNGG 2 cut(s) 1337, 1473
SduI GDGCHC 1 cut(s) 542
SfaNI GCATC 4 cut(s) 304, 883, 1125, 1525
SfcI CTRYAG 1 cut(s) 1579
SfuI TTCGAA 1 cut(s) 821
SinI GGWCC 1 cut(s) 1129
Sse9I AATT 3 cut(s) 73, 529, 817
SseBI AGGCCT 2 cut(s) 353, 649
SspMI CTAG 2 cut(s) 56, 281
StuI AGGCCT 2 cut(s) 353, 649
StyD4I CCNGG 2 cut(s) 1335, 1471
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 4 cut(s) 193, 270, 1113, 1211
TaiI ACGT 4 cut(s) 461, 467, 914, 1038
TaqI TCGA 5 cut(s) 65, 168, 809, 821, 1632
TasI AATT 3 cut(s) 73, 529, 817
TatI WGTACW 2 cut(s) 611, 926
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 7 cut(s) 35, 62, 307, 415, 1237, 1669, 1697
TscAI CASTG 3 cut(s) 835, 850, 942
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 4 cut(s) 713, 1403, 1649, 1684
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 6 cut(s) 413, 468, 762, 771, 1313, 1710
TspGWI ACGGA 2 cut(s) 152, 300
TspRI CASTG 3 cut(s) 835, 850, 942
VpaK11BI GGWCC 1 cut(s) 1129
VspI ATTAAT 2 cut(s) 252, 726
XapI RAATTY 2 cut(s) 529, 817
XmiI GTMKAC 2 cut(s) 1455, 1529
XmnI GAANNNNTTC 1 cut(s) 1373
XspI CTAG 2 cut(s) 56, 281
ZrmI AGTACT 1 cut(s) 928
Zsp2I ATGCAT 1 cut(s) 1540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.