Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013167.1

Orthogroup ID

OG0006840

Physical Location & Seq

Genomic Coordinates Forward (+)

46455 .. 47666

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013167.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

atggaagaagcattacagctaaaatgcgtagcagaagccaaatacaaagagtccaacttcaagtcagccctgaaatacgccaagcgagcgcatcgcctgagcccgaacctggacggcgtctcctccatggtcaccgccttcgagatcctccgcaccgcccacaagaacgccgccccaaatcctcccaactggtacaagatcctccaggtagagccctttgcccacatcaacaccattaagaccagatacaagaagctcgcttttcttctccaccctgacaagaacccccatttgggctccgacgaggccttcaagcttgtaggggaggcctttcggttcctttccgataggattaggaggaaggagtatgatatgaagcttaggattaagattcaggataggaagatgagggagagtgggggtttagggtttggggagacgttttggacggcctgctccacgtgccggcttttgcatcagtttgagaggaggtatttggggtataatttggtttgccctagctgtaagaagagctttgaggcggtggaggttggggccggggacaatgctggggttaggagtagtgagaggttgaggaaaatgggcggtgaaggatcaagagggagtggaattcgtggtgggaatgtggagaaggaagtgagtgatggtaacggtgagtcgaggaggaggttgaggaagagaatgagtagcgtaggagaggtgatggagaggtgtgaaacaaagaaggcgaaagtagatgaggaaatgatgacattggcggaattgcagttggagatcaagcgaaaggcacaggagcagaagaagaacaagttgatgaggaaggagaaggagaaggataggcagaaggatgcaaagaagggtaagaattcagaagttgagagacgcgctgttttgaagaaaggtaagacttcagaagttgagaggcggattgttttgaagaaggctaaggatttgggaagtgctaagagcaggaaaaccaaagggccaatgagtgaagatttggagagtacggaggcggaggattcacagttttataatttcaagaaagataagaggagttttaagaaagggcaggtgtgggctatatatgatgatgatgatggaatgccgaggaattatggtttggttgatgaagttgtttctgtcagtccttttgaggtgaaaattagttggttggatcttcagaataat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

404

Amino Acids

46.32

Weight (kDa)

9.7

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35540
fragaria_vesca	FvH4_5g23220 FvH4_5g23220
malus_domestica	MD12G1084400.v1.1 MD14G1079000.v1.1 MD14G1079100.v1.1
prunus_persica	Prupe.8G141600_v2.0.a1 Prupe.8G141600_v2.0.a1 Prupe.8G141600_v2.0.a1 Prupe.8G141600_v2.0.a1 Prupe.8G141600_v2.0.a1 Prupe.8G141600_v2.0.a1
pyrus_communis	pycom12g07150 pycom14g06770
rosa_chinensis	RchiOBHm_Chr7g0212151
rosa_laevigata	RLG00000002922
rosa_multiflora	Rmu_co8425879.1_g000001 Rmu_sc0002283.1_g000051 Rmu_sc0013167.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247070
rosa_rugosa	Rorug07G0131600
rosa_samantha	Rh7AG264500 Rh7BG258400 Rh7CG281000 Rh7DG270900
rosa_wichuraiana	Rw7G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1056
AarI	CACCTGC	1 cut(s)	1084
Acc36I	ACCTGC	1 cut(s)	1084
AccII	CGCG	1 cut(s)	906
AciI	CCGC	9 cut(s)	135, 151, 156, 171, 542, 606, 779, 946, 1037
AclWI	GGATC	4 cut(s)	139, 193, 622, 1206
AcsI	RAATTY	2 cut(s)	630, 886
AcuI	CTGAAG	2 cut(s)	915, 1187
AcvI	CACGTG	1 cut(s)	462
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	2 cut(s)	194, 1030
AfiI	CCNNNNNNNGG	4 cut(s)	109, 292, 293, 465
AgsI	TTSAA	5 cut(s)	61, 313, 916, 958, 1063
AjnI	CCWGG	2 cut(s)	108, 204
AjuI	GAANNNNNNNTTGG	4 cut(s)	275, 307, 1127, 1159
AluBI	AGCT	6 cut(s)	19, 256, 316, 379, 522, 534
AluI	AGCT	6 cut(s)	19, 256, 316, 379, 522, 534
Alw26I	GTCTC	3 cut(s)	124, 431, 895
AlwI	GGATC	4 cut(s)	139, 193, 622, 1206
AoxI	GGCC	5 cut(s)	306, 327, 450, 555, 1004
ApoI	RAATTY	2 cut(s)	630, 886
AspLEI	GCGC	2 cut(s)	91, 908
AspS9I	GGNCC	2 cut(s)	555, 1004
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	5 cut(s)	124, 620, 686, 733, 1192
BanII	GRGCYC	3 cut(s)	104, 216, 299
BarI	GAAGNNNNNNTAC	1 cut(s)	29
BbrPI	CACGTG	1 cut(s)	462
BccI	CCATC	3 cut(s)	659, 718, 1115
BceAI	ACGGC	2 cut(s)	130, 465
BciT130I	CCWGG	2 cut(s)	110, 206
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	3 cut(s)	124, 431, 895
BfaI	CTAG	1 cut(s)	519
BfuAI	ACCTGC	1 cut(s)	1084
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	3 cut(s)	110, 206, 559
BmgT120I	GGNCC	2 cut(s)	555, 1004
BmiI	GGNNCC	3 cut(s)	298, 338, 556
BmrFI	CCNGG	3 cut(s)	110, 206, 559
BmsI	GCATC	3 cut(s)	100, 484, 859
BpmI	CTGGAG	1 cut(s)	188
Bpu10I	CCTNAGC	3 cut(s)	98, 380, 966
BpuMI	CCSGG	1 cut(s)	559
BsaAI	YACGTR	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	126, 558, 1130
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 292, 293, 465
Bse118I	RCCGGY	1 cut(s)	465
Bse1I	ACTGG	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	110, 206
BseDI	CCNNGG	3 cut(s)	126, 558, 1130
BseGI	GGATG	1 cut(s)	874
BseLI	CCNNNNNNNGG	4 cut(s)	109, 292, 293, 465
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	5 cut(s)	112, 502, 697, 700, 1090
BseYI	CCCAGC	1 cut(s)	569
Bsh1236I	CGCG	1 cut(s)	906
BshFI	GGCC	5 cut(s)	308, 329, 452, 557, 1006
BsiSI	CCGG	2 cut(s)	466, 558
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	4 cut(s)	109, 292, 293, 465
BsmAI	GTCTC	3 cut(s)	124, 431, 895
BsmBI	CGTCTC	3 cut(s)	124, 431, 895
BsmFI	GGGAC	1 cut(s)	575
BsmI	GAATGC	1 cut(s)	1131
BsnI	GGCC	5 cut(s)	308, 329, 452, 557, 1006
Bsp1286I	GDGCHC	3 cut(s)	104, 216, 299
Bsp143I	GATC	5 cut(s)	144, 198, 614, 795, 1198
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	9 cut(s)	135, 151, 156, 171, 542, 606, 779, 946, 1037
BspANI	GGCC	5 cut(s)	308, 329, 452, 557, 1006
BspCNI	CTCAG	1 cut(s)	90
BspFNI	CGCG	1 cut(s)	906
BspLI	GGNNCC	3 cut(s)	298, 338, 556
BspMI	ACCTGC	1 cut(s)	1084
BspPI	GGATC	4 cut(s)	139, 193, 622, 1206
BspQI	GCTCTTC	1 cut(s)	524
BsrFI	RCCGGY	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	465
BssECI	CCNNGG	3 cut(s)	126, 558, 1130
BssMI	GATC	5 cut(s)	144, 198, 614, 795, 1198
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	2 cut(s)	110, 206
Bst4CI	ACNGT	2 cut(s)	674, 1050
Bst6I	CTCTTC	2 cut(s)	524, 692
BstACI	GRCGYC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	462
BstC8I	GCNNGC	4 cut(s)	87, 258, 454, 467
BstDEI	CTNAG	4 cut(s)	98, 380, 966, 984
BstDSI	CCRYGG	1 cut(s)	126
BstEII	GGTNACC	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	874
BstFNI	CGCG	1 cut(s)	906
BstHHI	GCGC	2 cut(s)	91, 908
BstKTI	GATC	5 cut(s)	147, 201, 617, 798, 1201
BstMAI	GTCTC	3 cut(s)	124, 431, 895
BstMBI	GATC	5 cut(s)	144, 198, 614, 795, 1198
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 462
BstNI	CCWGG	2 cut(s)	110, 206
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	3 cut(s)	108, 204, 557
BstUI	CGCG	1 cut(s)	906
BstX2I	RGATCY	3 cut(s)	144, 198, 1198
BstYI	RGATCY	3 cut(s)	144, 198, 1198
BsuRI	GGCC	5 cut(s)	308, 329, 452, 557, 1006
BtgI	CCRYGG	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	874
BveI	ACCTGC	1 cut(s)	1084
Cac8I	GCNNGC	4 cut(s)	87, 258, 454, 467
CfoI	GCGC	2 cut(s)	91, 908
Cfr10I	RCCGGY	1 cut(s)	465
Cfr13I	GGNCC	2 cut(s)	555, 1004
CseI	GACGC	2 cut(s)	106, 912
Csp6I	GTAC	2 cut(s)	193, 1029
CviAII	CATG	1 cut(s)	127
CviQI	GTAC	2 cut(s)	193, 1029
DdeI	CTNAG	4 cut(s)	98, 380, 966, 984
DpnI	GATC	5 cut(s)	146, 200, 616, 797, 1200
DpnII	GATC	5 cut(s)	144, 198, 614, 795, 1198
Eam1104I	CTCTTC	2 cut(s)	524, 692
EarI	CTCTTC	2 cut(s)	524, 692
EciI	GGCGGA	3 cut(s)	794, 961, 1052
Eco130I	CCWWGG	1 cut(s)	126
Eco147I	AGGCCT	2 cut(s)	308, 329
Eco24I	GRGCYC	3 cut(s)	104, 216, 299
Eco57I	CTGAAG	2 cut(s)	915, 1187
Eco72I	CACGTG	1 cut(s)	462
Eco91I	GGTNACC	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	130
EcoRI	GAATTC	2 cut(s)	630, 886
EcoRII	CCWGG	2 cut(s)	108, 204
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	3 cut(s)	104, 216, 299
ErhI	CCWWGG	1 cut(s)	126
Esp3I	CGTCTC	3 cut(s)	124, 431, 895
FaeI	CATG	1 cut(s)	130
FaiI	YATR	9 cut(s)	128, 369, 374, 504, 1056, 1106, 1108, 1110, 1140
FalI	AAGNNNNNCTT	2 cut(s)	518, 550
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	881
FriOI	GRGCYC	3 cut(s)	104, 216, 299
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	519
GlaI	GCGC	2 cut(s)	90, 907
GluI	GCNGC	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	573
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	5 cut(s)	308, 329, 452, 557, 1006
HapII	CCGG	2 cut(s)	466, 558
HgaI	GACGC	2 cut(s)	106, 912
HhaI	GCGC	2 cut(s)	91, 908
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	130
Hin6I	GCGC	2 cut(s)	89, 906
HinP1I	GCGC	2 cut(s)	89, 906
HindIII	AAGCTT	2 cut(s)	314, 377
HinfI	GANTC	4 cut(s)	50, 391, 677, 1043
HpaII	CCGG	2 cut(s)	466, 558
HphI	GGTGA	5 cut(s)	124, 620, 686, 733, 1192
Hpy188I	TCNGA	5 cut(s)	301, 346, 892, 934, 1206
Hpy188III	TCNNGA	4 cut(s)	142, 395, 618, 1063
Hpy99I	CGWCG	1 cut(s)	305
HpyCH4III	ACNGT	2 cut(s)	674, 1050
HpyCH4IV	ACGT	2 cut(s)	440, 461
HpyCH4V	TGCA	3 cut(s)	475, 787, 872
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 462
HpyF3I	CTNAG	4 cut(s)	98, 380, 966, 984
HpySE526I	ACGT	2 cut(s)	440, 461
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	130
HspAI	GCGC	2 cut(s)	89, 906
KroI	GCCGGC	1 cut(s)	465
KroNI	GCCGGC	1 cut(s)	467
Kzo9I	GATC	5 cut(s)	144, 198, 614, 795, 1198
LguI	GCTCTTC	1 cut(s)	524
LmnI	GCTCC	3 cut(s)	302, 461, 814
LweI	GCATC	3 cut(s)	100, 484, 859
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	2 cut(s)	440, 461
MaeIII	GTNAC	2 cut(s)	130, 668
MalI	GATC	5 cut(s)	146, 200, 616, 797, 1200
MboI	GATC	5 cut(s)	144, 198, 614, 795, 1198
MflI	RGATCY	3 cut(s)	144, 198, 1198
MhlI	GDGCHC	3 cut(s)	104, 216, 299
MluCI	AATT	7 cut(s)	505, 630, 782, 886, 1057, 1135, 1185
MlyI	GAGTC	2 cut(s)	59, 686
MmeI	TCCRAC	4 cut(s)	78, 324, 771, 1176
MroNI	GCCGGC	1 cut(s)	465
MseI	TTAA	3 cut(s)	237, 387, 1083
MspI	CCGG	2 cut(s)	466, 558
MspR9I	CCNGG	3 cut(s)	110, 206, 559
Mva1269I	GAATGC	1 cut(s)	1131
MvaI	CCWGG	2 cut(s)	110, 206
MvnI	CGCG	1 cut(s)	906
MwoI	GCNNNNNNNGC	2 cut(s)	86, 462
NaeI	GCCGGC	1 cut(s)	467
NciI	CCSGG	1 cut(s)	559
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	5 cut(s)	144, 198, 614, 795, 1198
NgoMIV	GCCGGC	1 cut(s)	465
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	3 cut(s)	298, 338, 556
NmeAIII	GCCGAG	1 cut(s)	1155
NmuCI	GTSAC	1 cut(s)	130
PaqCI	CACCTGC	1 cut(s)	1084
PceI	AGGCCT	2 cut(s)	308, 329
PciSI	GCTCTTC	1 cut(s)	524
PctI	GAATGC	1 cut(s)	1131
PdiI	GCCGGC	1 cut(s)	467
PfeI	GAWTC	2 cut(s)	391, 1043
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	2 cut(s)	58, 685
PmaCI	CACGTG	1 cut(s)	462
PmlI	CACGTG	1 cut(s)	462
PpsI	GAGTC	2 cut(s)	58, 685
Ppu21I	YACGTR	1 cut(s)	462
PsiI	TTATAA	1 cut(s)	1056
Psp6I	CCWGG	2 cut(s)	108, 204
PspCI	CACGTG	1 cut(s)	462
PspEI	GGTNACC	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	569
PspGI	CCWGG	2 cut(s)	108, 204
PspN4I	GGNNCC	3 cut(s)	298, 338, 556
PspPI	GGNCC	2 cut(s)	555, 1004
PsuI	RGATCY	3 cut(s)	144, 198, 1198
PsyI	GACNNNGTC	1 cut(s)	116
RsaI	GTAC	2 cut(s)	194, 1030
RsaNI	GTAC	2 cut(s)	193, 1029
SapI	GCTCTTC	1 cut(s)	524
SaqAI	TTAA	3 cut(s)	237, 387, 1083
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	5 cut(s)	144, 198, 614, 795, 1198
Sau96I	GGNCC	2 cut(s)	555, 1004
SchI	GAGTC	2 cut(s)	59, 686
ScrFI	CCNGG	3 cut(s)	110, 206, 559
SduI	GDGCHC	3 cut(s)	104, 216, 299
SfaNI	GCATC	3 cut(s)	100, 484, 859
Sse9I	AATT	7 cut(s)	505, 630, 782, 886, 1057, 1135, 1185
SseBI	AGGCCT	2 cut(s)	308, 329
SsiI	CCGC	9 cut(s)	135, 151, 156, 171, 542, 606, 779, 946, 1037
SspMI	CTAG	1 cut(s)	519
StuI	AGGCCT	2 cut(s)	308, 329
StyD4I	CCNGG	3 cut(s)	108, 204, 557
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	674, 1050
TaiI	ACGT	2 cut(s)	443, 464
TaqI	TCGA	2 cut(s)	141, 680
TasI	AATT	7 cut(s)	505, 630, 782, 886, 1057, 1135, 1185
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	391, 1043
Tru1I	TTAA	3 cut(s)	237, 387, 1083
Tru9I	TTAA	3 cut(s)	237, 387, 1083
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	389, 1167
TspGWI	ACGGA	1 cut(s)	1046
Tth111I	GACNNNGTC	1 cut(s)	116
XapI	RAATTY	2 cut(s)	630, 886
XspI	CTAG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.