Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8425879.1

Orthogroup ID

OG0006840

Physical Location & Seq

Genomic Coordinates Reverse (-)

861 .. 1340

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8425879.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgggattgcctgtgccttgtggaaggtttaaagttaccaggcagaccaccactaattcagtgcatattttttctcatgtcacggactgtgacagagctgcaagagagatttatcggatttatccaaagaagggatcagtttgggcactttataatgaagcagcttttgacgctgatggaggaaatctgttggttaaagagaagcgatgctatgacatagttgtgtttctgacgagttacagtgagatgcacggtttgagtatggggtatcttgagaaggttgacgggttcaacacggtatttaagagaagggagattggagctcatgctattcgatgtttagagaaagatgatgtgaggttaatttcacatgaaattcctgcaaagaagctctctggtaatgaggctccaaacctttcgaaagactgttgggaacttgatcctgcttctcttcctctggatttgcttacatttggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

159

Amino Acids

17.91

Weight (kDa)

6.95

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35540
fragaria_vesca	FvH4_5g23220 FvH4_5g23220
malus_domestica	MD12G1084400.v1.1 MD14G1079000.v1.1 MD14G1079100.v1.1
prunus_persica	Prupe.8G141600_v2.0.a1 Prupe.8G141600_v2.0.a1 Prupe.8G141600_v2.0.a1 Prupe.8G141600_v2.0.a1 Prupe.8G141600_v2.0.a1 Prupe.8G141600_v2.0.a1
pyrus_communis	pycom12g07150 pycom14g06770
rosa_chinensis	RchiOBHm_Chr7g0212151
rosa_laevigata	RLG00000002922
rosa_multiflora	Rmu_co8425879.1_g000001 Rmu_sc0002283.1_g000051 Rmu_sc0013167.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247070
rosa_rugosa	Rorug07G0131600
rosa_samantha	Rh7AG264500 Rh7BG258400 Rh7CG281000 Rh7DG270900
rosa_wichuraiana	Rw7G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	153
AclWI	GGATC	2 cut(s)	142, 434
AcsI	RAATTY	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	4 cut(s)	98, 164, 323, 391
AluI	AGCT	4 cut(s)	98, 164, 323, 391
Alw21I	GWGCWC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	142, 434
ApeKI	GCWGC	2 cut(s)	98, 161
ApoI	RAATTY	1 cut(s)	375
AsuII	TTCGAA	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	85, 173
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	40
BisI	GCNGC	2 cut(s)	99, 162
BlsI	GCNGC	2 cut(s)	100, 163
Bme1390I	CCNGG	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	2 cut(s)	197, 237
Bpu14I	TTCGAA	1 cut(s)	419
BpuEI	CTTGAG	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	85, 173
BsiHKAI	GWGCWC	1 cut(s)	325
BslI	CCNNNNNNNGG	1 cut(s)	131
Bsp119I	TTCGAA	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	148, 325
Bsp143I	GATC	2 cut(s)	134, 439
BspLI	GGNNCC	1 cut(s)	408
BspPI	GGATC	2 cut(s)	142, 434
BspT104I	TTCGAA	1 cut(s)	419
BssMI	GATC	2 cut(s)	134, 439
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	5 cut(s)	89, 242, 254, 298, 428
Bst6I	CTCTTC	1 cut(s)	456
BstBI	TTCGAA	1 cut(s)	419
BstKTI	GATC	2 cut(s)	137, 442
BstMBI	GATC	2 cut(s)	134, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstSLI	GKGCMC	1 cut(s)	148
BstV1I	GCAGC	2 cut(s)	85, 173
BtgZI	GCGATG	1 cut(s)	220
BtsIMutI	CAGTG	2 cut(s)	66, 247
CseI	GACGC	1 cut(s)	179
CviAII	CATG	3 cut(s)	77, 326, 371
CviJI	RGCY	6 cut(s)	98, 164, 323, 391, 407, 477
CviKI_1	RGCY	6 cut(s)	98, 164, 323, 391, 407, 477
DpnI	GATC	2 cut(s)	136, 441
DpnII	GATC	2 cut(s)	134, 439
DraI	TTTAAA	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Ecl136II	GAGCTC	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	325
FaeI	CATG	3 cut(s)	80, 329, 374
FaiI	YATR	8 cut(s)	66, 78, 153, 213, 218, 263, 327, 372
FatI	CATG	3 cut(s)	76, 325, 370
Fnu4HI	GCNGC	2 cut(s)	99, 162
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	2 cut(s)	99, 162
GluI	GCNGC	2 cut(s)	99, 162
HgaI	GACGC	1 cut(s)	179
Hin1II	CATG	3 cut(s)	80, 329, 374
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	117, 231
Hpy188III	TCNNGA	2 cut(s)	272, 458
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	4 cut(s)	18, 124, 271, 303
HpyCH4III	ACNGT	5 cut(s)	89, 242, 254, 298, 428
HpyCH4V	TGCA	4 cut(s)	64, 101, 250, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
Hsp92II	CATG	3 cut(s)	80, 329, 374
Kzo9I	GATC	2 cut(s)	134, 439
LmnI	GCTCC	2 cut(s)	320, 412
LpnPI	CCDG	7 cut(s)	24, 25, 52, 381, 393, 443, 456
Lsp1109I	GCAGC	2 cut(s)	85, 173
LweI	GCATC	2 cut(s)	197, 237
MaeIII	GTNAC	4 cut(s)	34, 79, 89, 236
MalI	GATC	2 cut(s)	136, 441
MboI	GATC	2 cut(s)	134, 439
MboII	GAAGA	1 cut(s)	443
MhlI	GDGCHC	2 cut(s)	148, 325
MluCI	AATT	3 cut(s)	55, 363, 375
MnlI	CCTC	4 cut(s)	173, 351, 397, 465
MseI	TTAA	4 cut(s)	30, 195, 303, 362
MslI	CAYNNNNRTG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	2 cut(s)	134, 439
NlaIII	CATG	3 cut(s)	80, 329, 374
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	2 cut(s)	79, 89
NspV	TTCGAA	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	100, 163
PsiI	TTATAA	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	325
SaqAI	TTAA	4 cut(s)	30, 195, 303, 362
SatI	GCNGC	2 cut(s)	99, 162
Sau3AI	GATC	2 cut(s)	134, 439
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	2 cut(s)	148, 325
SetI	ASST	8 cut(s)	29, 100, 166, 282, 325, 362, 393, 417
SfaNI	GCATC	2 cut(s)	197, 237
SfuI	TTCGAA	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	3 cut(s)	55, 363, 375
SstI	GAGCTC	1 cut(s)	325
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	5 cut(s)	89, 242, 254, 298, 428
TaqI	TCGA	2 cut(s)	334, 419
TasI	AATT	3 cut(s)	55, 363, 375
Tru1I	TTAA	4 cut(s)	30, 195, 303, 362
Tru9I	TTAA	4 cut(s)	30, 195, 303, 362
TscAI	CASTG	2 cut(s)	66, 247
TseFI	GTSAC	2 cut(s)	79, 89
TseI	GCWGC	2 cut(s)	98, 161
Tsp45I	GTSAC	2 cut(s)	79, 89
TspDTI	ATGAA	2 cut(s)	171, 387
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	66, 247
XapI	RAATTY	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.