Rh7BG258400

Domain of unknown function (DUF3444)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
23523581 .. 23526540
2960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG258400.1

Sequence Viewer

Length: 1746 bp
ATGGAAGAAGCAGAAGCATTACAGCTAAAATGCGCAGCAGAAGCCAAATACAAAGAGTCCAACTTCAAGTCAGCCCTGAAATACGCCAAGCGAGCGCATCGCCTGAGCCCGAACCTGGACGGCGTCTCCTCCATGGTCACCGCCTTCGAGATCCTCCGCACCGCCCACAAGAACGCCGCCCCAAATCCTCCCAACTGGTACAAGATCCTCCAGGTAGAGCCCTTTGCCCACATCAACACCATTAAGACCAAATACAAGAAGCTCGCTTTTCTTCTCCACCCTGATAAGAACCCCCATTTGGGCTCCGACGAGGCCTTCAAGCTTGTAGGGGAGGCCTTTCGGTTCCTTTCGGATAGGATTAGGAGGAAGGAGTATGATATGAAGCTTAGGATTAAGATTCAGGATAGGAAGATGAGGGAGAGTGGGGGTTTAGGGTTTGGGGAGACGTTTTGGACGGCGTGCTCGACGTGCCGGCTTTTGCATCAGTTTGAGAGGAGGTATTTGGGTCATAATTTGGTTTGCCCTAGCTGTAAGAAGAGCTTTGAGGCCGTGGAGGTTGGGGGTGGGGACAATGCTGGGGTTAGGAGTAGTGAGAGGTTGAGGAAAATGGGCGGCGAAGGATCGAGGGGGAGTGGAATTGGTGGTGGGAATGTGGAGAAGGAAGTGAGTGATGGTAATGGTGAGTCGAGGAGGAGGTTGAGGAAGAGAATGAGTAGTGTAGGAGAGGTGATGGAGAGGTGTGAAACGAAGAAGGCGAAAGTAGATGAGGAAGTGATGACATTGGCGGAATTGCAGTTGGAGATCAAGCAAAAGGCAGAGGAGCAGAAGAAGAAGTTGATGAGGAAGGAGAAGGATAAAAGAGAGAAGGAGAAGGAGAAGGATAGGCAGAAGGATGCAAAGAAGGGTAATAATTCAGAAGTTGAGAGACGCGCTGTTTTGAAGAAAGGCAAGACTTCAGAAGTTGAGAGGCGGACTGTTTTGAAGAAGGCTAAGGATTTGGGAAGTGCTAAGAGCAGGAAAAGCAACGGGCCAAAGAGTGAAGATTTGGAGAGCACGGAGGCGGAGGATTCACAGTTTTATAATTTCAAGAAAGATAAGAGGAGTTTTAAGAAAGGGCAGGTGTGGGCTATATATGATGATGATGATGGAATGCCGAGGAATTATGGTTTGGTTGATGAAGTTGTTTCTGTCAGTCCTTTTGAGGTGAAAATTAGTTGGTTGGATCTTCAGAATAATGGGGATCAGTGGTTGGCTTCTTGGGAGAAAATGGGATTGCCTGTGCCTTGTGGAAGGTTTAAAGTTACCAAGCAGACCACCACTAATTCAGTGCATATATTTTCTCATGTCGTGGATTGTGACAGAGCTGCAAGAGAGATTTATCGGATTTATCCAAAGAAGGGATCAGTTTGGGCACTTTATAATGAAGCAGCTTTTGACACTGATGGAGGAAATCTGTTGGTTAAGGAGAAGCGATGCTATGACATAGTTGTGTTTCTGACGAGTTACAGTGAGATGCACGGTTTGAGTATGGGGTATCTTGAGAAGGTTGACGGGTTCAACACGGTATTTAAGAGAAGGGAGATTGGAGCTCATGCTATTCGATGTTTAGAGAAAGATGATGTGAGGTTAATTTCACATGAAATTCCTGCAAAGAAGCTCTCTGGTAATGAGGCTCCAAACCTTTCGAAAGACTGTTGGGAACTTGATCCTGCTTCTCTTCCTCTGGATTTGCTTACATTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

581

Amino Acids

66.1

Weight (kDa)

9.29

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 65 - 126 7.3e-17 DnaJ domain
Zn_ribbon_20 PF23551 150 - 184 3.4e-07 Zinc beta-ribbon domain
DUF3444 PF11926 351 - 557 4.9e-63 Domain of unknown function (DUF3444)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1080, 1419
AarI CACCTGC 1 cut(s) 1108
Acc16I TGCGCA 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 1108
AccII CGCG 1 cut(s) 930
AciI CCGC 8 cut(s) 141, 157, 162, 177, 612, 785, 970, 1061
AclWI GGATC 7 cut(s) 145, 199, 628, 1230, 1248, 1408, 1700
AcsI RAATTY 1 cut(s) 1641
AcuI CTGAAG 2 cut(s) 939, 1211
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 1 cut(s) 200
AfiI CCNNNNNNNGG 4 cut(s) 115, 298, 299, 1397
AgsI TTSAA 6 cut(s) 67, 319, 940, 982, 1087, 1558
AjiI CACGTC 1 cut(s) 468
AjnI CCWGG 2 cut(s) 114, 210
AjuI GAANNNNNNNTTGG 4 cut(s) 281, 313, 1151, 1183
Alw21I GWGCWC 3 cut(s) 464, 1055, 1591
Alw26I GTCTC 3 cut(s) 130, 437, 919
AlwI GGATC 7 cut(s) 145, 199, 628, 1230, 1248, 1408, 1700
AoxI GGCC 4 cut(s) 312, 333, 546, 1028
ApeKI GCWGC 3 cut(s) 35, 1364, 1427
ApoI RAATTY 1 cut(s) 1641
AspLEI GCGC 3 cut(s) 35, 97, 932
AspS9I GGNCC 1 cut(s) 1028
AsuHPI GGTGA 4 cut(s) 130, 692, 739, 1216
AsuII TTCGAA 1 cut(s) 1685
BaeGI GKGCMC 1 cut(s) 1414
BanII GRGCYC 4 cut(s) 110, 222, 305, 1591
Bbv12I GWGCWC 3 cut(s) 464, 1055, 1591
BbvI GCAGC 3 cut(s) 47, 1351, 1439
BccI CCATC 4 cut(s) 665, 724, 1139, 1436
BceAI ACGGC 3 cut(s) 136, 471, 533
BciT130I CCWGG 2 cut(s) 116, 212
BcoDI GTCTC 3 cut(s) 130, 437, 919
BfaI CTAG 1 cut(s) 525
BfuAI ACCTGC 1 cut(s) 1108
BisI GCNGC 5 cut(s) 36, 177, 613, 1365, 1428
BlsI GCNGC 5 cut(s) 37, 178, 614, 1366, 1429
Bme1390I CCNGG 2 cut(s) 116, 212
BmgBI CACGTC 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 1028
BmiI GGNNCC 3 cut(s) 304, 344, 1674
BmrFI CCNGG 2 cut(s) 116, 212
BmsI GCATC 5 cut(s) 106, 490, 883, 1463, 1503
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 3 cut(s) 104, 386, 990
Bpu14I TTCGAA 1 cut(s) 1685
BpuEI CTTGAG 1 cut(s) 1559
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 3 cut(s) 132, 549, 1154
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 4 cut(s) 115, 298, 299, 1397
Bse118I RCCGGY 1 cut(s) 471
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 2 cut(s) 116, 212
BseDI CCNNGG 3 cut(s) 132, 549, 1154
BseGI GGATG 1 cut(s) 898
BseLI CCNNNNNNNGG 4 cut(s) 115, 298, 299, 1397
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 6 cut(s) 118, 508, 703, 706, 833, 1114
BseSI GKGCMC 1 cut(s) 1414
BseXI GCAGC 3 cut(s) 47, 1351, 1439
BseYI CCCAGC 1 cut(s) 575
Bsh1236I CGCG 1 cut(s) 930
BshFI GGCC 4 cut(s) 314, 335, 548, 1030
BsiHKAI GWGCWC 3 cut(s) 464, 1055, 1591
BsiSI CCGG 1 cut(s) 472
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 4 cut(s) 115, 298, 299, 1397
BsmAI GTCTC 3 cut(s) 130, 437, 919
BsmBI CGTCTC 3 cut(s) 130, 437, 919
BsmFI GGGAC 1 cut(s) 581
BsmI GAATGC 1 cut(s) 1155
BsnI GGCC 4 cut(s) 314, 335, 548, 1030
Bsp119I TTCGAA 1 cut(s) 1685
Bsp1286I GDGCHC 7 cut(s) 110, 222, 305, 464, 1055, 1414, 1591
Bsp143I GATC 8 cut(s) 150, 204, 620, 801, 1222, 1240, 1400, 1705
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 8 cut(s) 141, 157, 162, 177, 612, 785, 970, 1061
BspANI GGCC 4 cut(s) 314, 335, 548, 1030
BspCNI CTCAG 1 cut(s) 96
BspFNI CGCG 1 cut(s) 930
BspLI GGNNCC 3 cut(s) 304, 344, 1674
BspMI ACCTGC 1 cut(s) 1108
BspPI GGATC 7 cut(s) 145, 199, 628, 1230, 1248, 1408, 1700
BspQI GCTCTTC 1 cut(s) 530
BspT104I TTCGAA 1 cut(s) 1685
BsrFI RCCGGY 1 cut(s) 471
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 471
BssECI CCNNGG 3 cut(s) 132, 549, 1154
BssMI GATC 8 cut(s) 150, 204, 620, 801, 1222, 1240, 1400, 1705
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 116, 212
Bst4CI ACNGT 6 cut(s) 976, 1074, 1508, 1520, 1564, 1694
Bst6I CTCTTC 3 cut(s) 530, 698, 1722
BstACI GRCGYC 1 cut(s) 123
BstBI TTCGAA 1 cut(s) 1685
BstC8I GCNNGC 4 cut(s) 93, 264, 460, 473
BstDEI CTNAG 4 cut(s) 104, 386, 990, 1008
BstDSI CCRYGG 2 cut(s) 132, 549
BstEII GGTNACC 1 cut(s) 136
BstF5I GGATG 1 cut(s) 898
BstFNI CGCG 1 cut(s) 930
BstHHI GCGC 3 cut(s) 35, 97, 932
BstKTI GATC 8 cut(s) 153, 207, 623, 804, 1225, 1243, 1403, 1708
BstMAI GTCTC 3 cut(s) 130, 437, 919
BstMBI GATC 8 cut(s) 150, 204, 620, 801, 1222, 1240, 1400, 1705
BstMWI GCNNNNNNNGC 4 cut(s) 41, 92, 468, 1020
BstNI CCWGG 2 cut(s) 116, 212
BstPI GGTNACC 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 114, 210
BstSLI GKGCMC 1 cut(s) 1414
BstUI CGCG 1 cut(s) 930
BstV1I GCAGC 3 cut(s) 47, 1351, 1439
BstX2I RGATCY 3 cut(s) 150, 204, 1222
BstYI RGATCY 3 cut(s) 150, 204, 1222
BsuRI GGCC 4 cut(s) 314, 335, 548, 1030
BtgI CCRYGG 2 cut(s) 132, 549
BtgZI GCGATG 2 cut(s) 83, 1486
BtrI CACGTC 1 cut(s) 468
BtsCI GGATG 1 cut(s) 898
BtsIMutI CAGTG 4 cut(s) 1250, 1332, 1437, 1513
BveI ACCTGC 1 cut(s) 1108
Cac8I GCNNGC 4 cut(s) 93, 264, 460, 473
CfoI GCGC 3 cut(s) 35, 97, 932
Cfr10I RCCGGY 1 cut(s) 471
Cfr13I GGNCC 1 cut(s) 1028
CseI GACGC 2 cut(s) 112, 936
Csp6I GTAC 1 cut(s) 199
CviAII CATG 4 cut(s) 133, 1343, 1592, 1637
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 4 cut(s) 104, 386, 990, 1008
DpnI GATC 8 cut(s) 152, 206, 622, 803, 1224, 1242, 1402, 1707
DpnII GATC 8 cut(s) 150, 204, 620, 801, 1222, 1240, 1400, 1705
DraI TTTAAA 1 cut(s) 1297
Eam1104I CTCTTC 3 cut(s) 530, 698, 1722
EarI CTCTTC 3 cut(s) 530, 698, 1722
EciI GGCGGA 3 cut(s) 800, 985, 1076
Ecl136II GAGCTC 1 cut(s) 1589
Eco130I CCWWGG 1 cut(s) 132
Eco147I AGGCCT 2 cut(s) 314, 335
Eco24I GRGCYC 4 cut(s) 110, 222, 305, 1591
Eco53kI GAGCTC 1 cut(s) 1589
Eco57I CTGAAG 2 cut(s) 939, 1211
Eco91I GGTNACC 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 1589
EcoO65I GGTNACC 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 114, 210
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 4 cut(s) 110, 222, 305, 1591
ErhI CCWWGG 1 cut(s) 132
Esp3I CGTCTC 3 cut(s) 130, 437, 919
FaeI CATG 4 cut(s) 136, 1346, 1595, 1640
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FaqI GGGAC 1 cut(s) 581
FatI CATG 4 cut(s) 132, 1342, 1591, 1636
Fnu4HI GCNGC 5 cut(s) 36, 177, 613, 1365, 1428
FokI GGATG 1 cut(s) 905
FriOI GRGCYC 4 cut(s) 110, 222, 305, 1591
Fsp4HI GCNGC 5 cut(s) 36, 177, 613, 1365, 1428
FspBI CTAG 1 cut(s) 525
FspI TGCGCA 1 cut(s) 34
GlaI GCGC 3 cut(s) 34, 96, 931
GluI GCNGC 5 cut(s) 36, 177, 613, 1365, 1428
GsaI CCCAGC 1 cut(s) 579
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 4 cut(s) 314, 335, 548, 1030
HapII CCGG 1 cut(s) 472
HgaI GACGC 2 cut(s) 112, 936
HhaI GCGC 3 cut(s) 35, 97, 932
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 4 cut(s) 136, 1346, 1595, 1640
Hin6I GCGC 3 cut(s) 33, 95, 930
HinP1I GCGC 3 cut(s) 33, 95, 930
HincII GTYRAC 1 cut(s) 1549
HindII GTYRAC 1 cut(s) 1549
HindIII AAGCTT 2 cut(s) 320, 383
HinfI GANTC 4 cut(s) 56, 397, 683, 1067
HpaII CCGG 1 cut(s) 472
HphI GGTGA 4 cut(s) 130, 692, 739, 1216
Hpy166II GTNNAC 1 cut(s) 1549
Hpy188I TCNGA 7 cut(s) 307, 352, 916, 958, 1230, 1383, 1497
Hpy188III TCNNGA 5 cut(s) 148, 401, 1087, 1538, 1724
Hpy8I GTNNAC 1 cut(s) 1549
Hpy99I CGWCG 2 cut(s) 311, 469
HpyCH4III ACNGT 6 cut(s) 976, 1074, 1508, 1520, 1564, 1694
HpyCH4IV ACGT 2 cut(s) 446, 467
HpyCH4V TGCA 7 cut(s) 481, 793, 896, 1330, 1367, 1516, 1649
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 92, 468, 1020
HpyF3I CTNAG 4 cut(s) 104, 386, 990, 1008
HpySE526I ACGT 2 cut(s) 446, 467
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 4 cut(s) 136, 1346, 1595, 1640
HspAI GCGC 3 cut(s) 33, 95, 930
KroI GCCGGC 1 cut(s) 471
KroNI GCCGGC 1 cut(s) 473
Kzo9I GATC 8 cut(s) 150, 204, 620, 801, 1222, 1240, 1400, 1705
LguI GCTCTTC 1 cut(s) 530
LmnI GCTCC 4 cut(s) 308, 820, 1586, 1678
Lsp1109I GCAGC 3 cut(s) 47, 1351, 1439
LweI GCATC 5 cut(s) 106, 490, 883, 1463, 1503
MaeI CTAG 1 cut(s) 525
MaeII ACGT 2 cut(s) 446, 467
MaeIII GTNAC 4 cut(s) 136, 1300, 1355, 1502
MalI GATC 8 cut(s) 152, 206, 622, 803, 1224, 1242, 1402, 1707
MboI GATC 8 cut(s) 150, 204, 620, 801, 1222, 1240, 1400, 1705
MflI RGATCY 3 cut(s) 150, 204, 1222
MhlI GDGCHC 7 cut(s) 110, 222, 305, 464, 1055, 1414, 1591
MlyI GAGTC 2 cut(s) 65, 692
MmeI TCCRAC 4 cut(s) 84, 330, 777, 1200
MroNI GCCGGC 1 cut(s) 471
MseI TTAA 7 cut(s) 243, 393, 1107, 1296, 1461, 1569, 1628
MslI CAYNNNNRTG 1 cut(s) 1487
MspI CCGG 1 cut(s) 472
MspR9I CCNGG 2 cut(s) 116, 212
Mva1269I GAATGC 1 cut(s) 1155
MvaI CCWGG 2 cut(s) 116, 212
MvnI CGCG 1 cut(s) 930
MwoI GCNNNNNNNGC 4 cut(s) 41, 92, 468, 1020
NaeI GCCGGC 1 cut(s) 473
NcoI CCATGG 1 cut(s) 132
NdeII GATC 8 cut(s) 150, 204, 620, 801, 1222, 1240, 1400, 1705
NgoMIV GCCGGC 1 cut(s) 471
NlaIII CATG 4 cut(s) 136, 1346, 1595, 1640
NlaIV GGNNCC 3 cut(s) 304, 344, 1674
NmeAIII GCCGAG 1 cut(s) 1179
NmuCI GTSAC 2 cut(s) 136, 1355
NsbI TGCGCA 1 cut(s) 34
NspV TTCGAA 1 cut(s) 1685
PaqCI CACCTGC 1 cut(s) 1108
PceI AGGCCT 2 cut(s) 314, 335
PciSI GCTCTTC 1 cut(s) 530
PcsI WCGNNNNNNNCGW 2 cut(s) 461, 752
PctI GAATGC 1 cut(s) 1155
PdiI GCCGGC 1 cut(s) 473
PfeI GAWTC 2 cut(s) 397, 1067
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 5 cut(s) 37, 178, 614, 1366, 1429
PleI GAGTC 2 cut(s) 64, 691
PpsI GAGTC 2 cut(s) 64, 691
PsiI TTATAA 2 cut(s) 1080, 1419
Psp124BI GAGCTC 1 cut(s) 1591
Psp6I CCWGG 2 cut(s) 114, 210
PspEI GGTNACC 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 575
PspGI CCWGG 2 cut(s) 114, 210
PspN4I GGNNCC 3 cut(s) 304, 344, 1674
PspPI GGNCC 1 cut(s) 1028
PsuI RGATCY 3 cut(s) 150, 204, 1222
PsyI GACNNNGTC 1 cut(s) 122
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 1487
SacI GAGCTC 1 cut(s) 1591
SapI GCTCTTC 1 cut(s) 530
SaqAI TTAA 7 cut(s) 243, 393, 1107, 1296, 1461, 1569, 1628
SatI GCNGC 5 cut(s) 36, 177, 613, 1365, 1428
Sau3AI GATC 8 cut(s) 150, 204, 620, 801, 1222, 1240, 1400, 1705
Sau96I GGNCC 1 cut(s) 1028
SchI GAGTC 2 cut(s) 65, 692
ScrFI CCNGG 2 cut(s) 116, 212
SduI GDGCHC 7 cut(s) 110, 222, 305, 464, 1055, 1414, 1591
SfaNI GCATC 5 cut(s) 106, 490, 883, 1463, 1503
SfuI TTCGAA 1 cut(s) 1685
SmiMI CAYNNNNRTG 1 cut(s) 1487
SmlI CTYRAG 1 cut(s) 1538
SmoI CTYRAG 1 cut(s) 1538
SseBI AGGCCT 2 cut(s) 314, 335
SsiI CCGC 8 cut(s) 141, 157, 162, 177, 612, 785, 970, 1061
SspMI CTAG 1 cut(s) 525
SstI GAGCTC 1 cut(s) 1591
StuI AGGCCT 2 cut(s) 314, 335
StyD4I CCNGG 2 cut(s) 114, 210
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 6 cut(s) 976, 1074, 1508, 1520, 1564, 1694
TaiI ACGT 2 cut(s) 449, 470
TaqI TCGA 6 cut(s) 147, 464, 623, 686, 1600, 1685
TauI GCSGC 2 cut(s) 179, 615
TfiI GAWTC 2 cut(s) 397, 1067
Tru1I TTAA 7 cut(s) 243, 393, 1107, 1296, 1461, 1569, 1628
Tru9I TTAA 7 cut(s) 243, 393, 1107, 1296, 1461, 1569, 1628
TscAI CASTG 4 cut(s) 1250, 1332, 1444, 1513
TseFI GTSAC 2 cut(s) 136, 1355
TseI GCWGC 3 cut(s) 35, 1364, 1427
Tsp45I GTSAC 2 cut(s) 136, 1355
TspDTI ATGAA 4 cut(s) 395, 1191, 1437, 1653
TspGWI ACGGA 1 cut(s) 1070
TspRI CASTG 4 cut(s) 1250, 1332, 1444, 1513
Tth111I GACNNNGTC 1 cut(s) 122
XapI RAATTY 1 cut(s) 1641
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.