Rroxscaffold_3G00247070

Domain of unknown function (DUF3444)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
40395530 .. 40397780
2251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247070.1

Sequence Viewer

Length: 1740 bp
ATGGAAGAAGCAGAAGCATTACAGCTAAAATGCGCAGCAGAAGCCAAATACAAAGAGTCCAACTTCAAGTCAGCTCTCAAATACGCCAAGCGAGCGCATCGCCTGAGCCCGAACCTCGACGGCGTCTCCTCCATGGTCACCGCCTTCGAGATCCTCCGCACCGCCCACAAGAACGCCGCCCCAAATCCTCCCAACTGGTACAAGATCCTCCAGGTAGAGCCCTTTGCCCACATCAACACCATTAAGACCAAATACAAGAAGCTCGCTTTTCTTCTCCACCCTGATAAGAACCCCCATTTGGGCTCCGACGAGGCCTTCAAGCTCGTAGGGGAGGCCTTTCGGCTCCTTTCGGATAGGATTAGGAGGAAGGAGTATGATATGAAGCTTAGGATTAAGATTCAGGATAGGAAGATGAAGGAGAGTGGGGGTTTAGGGTTTGGGGAGACGTTTTGGACCGCCTGCTCGACGTGCCGGCTTTTGCATCAGTTTGAGAGGAGGTATTTGGGGCATAATTTGGTTTGCCCTAGCTGTAAGAAGAGCTTTGAGGCTGTGGAGGTTGAGGGTGGGGACAATGCTGGGGTTAGGAGTAGTGAGAGGTTGAGGAAAATGGGCGGTGAAGGATCGAGAGGGAGTGGAATTCGTGGTGGGAATGTGGAGAAGGAAGTGCGTGATGGTAACGGTGAGTCGAGGAGGAGGTTGAGGAAGAGAATGAGTAGCGTAGGAGAGGTCATGGAGAGGTGTGAATCGAAGAAGGCGAAAGTAGATGAGGAAATGATGACATTGGCGGAATTGCAGTTGGAGGTCAAGCGAAAGGCACAGGAGCAGAAGAAGAAGCTGATGAGGAAGGAGAAGGATAAAAGAGAGAAGGAGAAGGATAGGCAGAAGGATGCAAAGAAGGGTAAGAATTCAGAAGTTGAGAGACGCGCTGTCTTGAAGAAAGGTAAGACTTCAGAAGTTGAGAGGCGGACTGTTTTGAAGAAGGCTAAGGATTTGGGAAGTGCTAAGAGCAGGAAAAGCAAGGGGCCAAAGAGTGAAGATTTGGAGAGTACGGAGGCGGAGGATTCACAGTTTTATAATTTCAAGAAAGATAAGAGGAGTTTTAAGAAAGGGCAGGTGTGGGCTATATATGATGATGATGATGGAATGCCGAGGAATTATGGTTTGGTTGATGAAGTTGTTTCTGTCAGTCCTTTTCAGGTGAAAATTAGTTGGTTGGATCTTCAGAATAATGGGGATCAGTGGTTGGCTTCTTGGGAGAAAATGGGATTGCCTGTGCCTTGTGGAAGGTTCAAAGTTACCAGGCAGACCACCACTAATTCAGTGCATATATTTTCTCATGTCGTGGATTGTGACAGAGCTGCAAGAGAGATTTATCGGATTTATCCAAAGAAGGGATCAGTTTGGGCACTTTATAATGAAGCAGCTTTTGACGCTGATGGAGGAAATCTGTTGGTTAAAGAGAAGCGATGCTATGACATAGTTGTGTTTCTGACGAGTTACAGTGAGATGCACGGTTTGAGTATGGGGTATCTTGAGAAGGTTGACGGGTTCAACACGGTATTTAAGAGAAGGGAGATTGGAGCTCATGCTATTCGATGTTTAGAGAAAGATGATGTGAGGTTAATTTCACATGAAATTCCTGCAAAGAAGCTCTCTGGTAATGAGGCTCCAAACCTTTCAAAAGACTGTTGGGAACTTGATCCTGCTTCTCTTCCTCTGGATTTGCTTACATTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

579

Amino Acids

66.08

Weight (kDa)

9.46

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 65 - 126 8e-17 DnaJ domain
Zn_ribbon_20 PF23551 150 - 184 3.4e-07 Zinc beta-ribbon domain
DUF3444 PF11926 349 - 555 8.2e-63 Domain of unknown function (DUF3444)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1074, 1413
AarI CACCTGC 1 cut(s) 1102
Acc16I TGCGCA 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 1102
AccII CGCG 1 cut(s) 924
AciI CCGC 9 cut(s) 141, 157, 162, 177, 456, 612, 785, 964, 1055
AclWI GGATC 7 cut(s) 145, 199, 628, 1224, 1242, 1402, 1694
AcsI RAATTY 3 cut(s) 636, 904, 1635
AcuI CTGAAG 2 cut(s) 933, 1205
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 2 cut(s) 200, 1048
AfiI CCNNNNNNNGG 3 cut(s) 298, 299, 1391
AgsI TTSAA 8 cut(s) 67, 319, 934, 976, 1081, 1291, 1552, 1680
AhdI GACNNNNNGTC 1 cut(s) 926
AjiI CACGTC 1 cut(s) 468
AjnI CCWGG 2 cut(s) 210, 1298
AjuI GAANNNNNNNTTGG 4 cut(s) 281, 313, 1145, 1177
Alw21I GWGCWC 1 cut(s) 1585
Alw26I GTCTC 3 cut(s) 130, 437, 913
AlwI GGATC 7 cut(s) 145, 199, 628, 1224, 1242, 1402, 1694
AoxI GGCC 3 cut(s) 312, 333, 1022
ApeKI GCWGC 3 cut(s) 35, 1358, 1421
ApoI RAATTY 3 cut(s) 636, 904, 1635
AspLEI GCGC 3 cut(s) 35, 97, 926
AspS9I GGNCC 2 cut(s) 453, 1022
AsuHPI GGTGA 4 cut(s) 130, 626, 692, 1210
AvaII GGWCC 1 cut(s) 453
BaeGI GKGCMC 1 cut(s) 1408
BanII GRGCYC 4 cut(s) 110, 222, 305, 1585
Bbv12I GWGCWC 1 cut(s) 1585
BbvI GCAGC 3 cut(s) 47, 1345, 1433
BccI CCATC 3 cut(s) 665, 1133, 1430
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 2 cut(s) 212, 1300
BcoDI GTCTC 3 cut(s) 130, 437, 913
BfaI CTAG 1 cut(s) 525
BfuAI ACCTGC 1 cut(s) 1102
BisI GCNGC 4 cut(s) 36, 177, 1359, 1422
BlsI GCNGC 4 cut(s) 37, 178, 1360, 1423
Bme1390I CCNGG 2 cut(s) 212, 1300
Bme18I GGWCC 1 cut(s) 453
BmeRI GACNNNNNGTC 1 cut(s) 926
BmgBI CACGTC 1 cut(s) 468
BmgT120I GGNCC 2 cut(s) 453, 1022
BmiI GGNNCC 4 cut(s) 304, 344, 1023, 1668
BmrFI CCNGG 2 cut(s) 212, 1300
BmsI GCATC 5 cut(s) 106, 490, 877, 1457, 1497
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 3 cut(s) 104, 386, 984
BpuEI CTTGAG 1 cut(s) 1553
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 132, 1148
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 3 cut(s) 298, 299, 1391
Bse118I RCCGGY 1 cut(s) 471
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 2 cut(s) 212, 1300
BseDI CCNNGG 2 cut(s) 132, 1148
BseGI GGATG 1 cut(s) 892
BseLI CCNNNNNNNGG 3 cut(s) 298, 299, 1391
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 5 cut(s) 118, 508, 703, 706, 1108
BseSI GKGCMC 1 cut(s) 1408
BseXI GCAGC 3 cut(s) 47, 1345, 1433
BseYI CCCAGC 1 cut(s) 575
Bsh1236I CGCG 1 cut(s) 924
BshFI GGCC 3 cut(s) 314, 335, 1024
BsiHKAI GWGCWC 1 cut(s) 1585
BsiSI CCGG 1 cut(s) 472
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 3 cut(s) 298, 299, 1391
BsmAI GTCTC 3 cut(s) 130, 437, 913
BsmBI CGTCTC 3 cut(s) 130, 437, 913
BsmFI GGGAC 1 cut(s) 581
BsmI GAATGC 1 cut(s) 1149
BsnI GGCC 3 cut(s) 314, 335, 1024
Bsp1286I GDGCHC 5 cut(s) 110, 222, 305, 1408, 1585
Bsp143I GATC 7 cut(s) 150, 204, 620, 1216, 1234, 1394, 1699
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 9 cut(s) 141, 157, 162, 177, 456, 612, 785, 964, 1055
BspANI GGCC 3 cut(s) 314, 335, 1024
BspCNI CTCAG 1 cut(s) 96
BspFNI CGCG 1 cut(s) 924
BspLI GGNNCC 4 cut(s) 304, 344, 1023, 1668
BspMI ACCTGC 1 cut(s) 1102
BspPI GGATC 7 cut(s) 145, 199, 628, 1224, 1242, 1402, 1694
BspQI GCTCTTC 1 cut(s) 530
BsrFI RCCGGY 1 cut(s) 471
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 471
BssECI CCNNGG 2 cut(s) 132, 1148
BssMI GATC 7 cut(s) 150, 204, 620, 1216, 1234, 1394, 1699
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 212, 1300
Bst4CI ACNGT 7 cut(s) 680, 970, 1068, 1502, 1514, 1558, 1688
Bst6I CTCTTC 3 cut(s) 530, 698, 1716
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 4 cut(s) 93, 264, 460, 473
BstDEI CTNAG 4 cut(s) 104, 386, 984, 1002
BstDSI CCRYGG 1 cut(s) 132
BstEII GGTNACC 1 cut(s) 136
BstF5I GGATG 1 cut(s) 892
BstFNI CGCG 1 cut(s) 924
BstHHI GCGC 3 cut(s) 35, 97, 926
BstKTI GATC 7 cut(s) 153, 207, 623, 1219, 1237, 1397, 1702
BstMAI GTCTC 3 cut(s) 130, 437, 913
BstMBI GATC 7 cut(s) 150, 204, 620, 1216, 1234, 1394, 1699
BstMWI GCNNNNNNNGC 5 cut(s) 41, 92, 468, 1014, 1430
BstNI CCWGG 2 cut(s) 212, 1300
BstPI GGTNACC 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 210, 1298
BstSLI GKGCMC 1 cut(s) 1408
BstUI CGCG 1 cut(s) 924
BstV1I GCAGC 3 cut(s) 47, 1345, 1433
BstX2I RGATCY 3 cut(s) 150, 204, 1216
BstYI RGATCY 3 cut(s) 150, 204, 1216
BsuRI GGCC 3 cut(s) 314, 335, 1024
BtgI CCRYGG 1 cut(s) 132
BtgZI GCGATG 2 cut(s) 83, 1480
BtrI CACGTC 1 cut(s) 468
BtsCI GGATG 1 cut(s) 892
BtsIMutI CAGTG 3 cut(s) 1244, 1326, 1507
BveI ACCTGC 1 cut(s) 1102
Cac8I GCNNGC 4 cut(s) 93, 264, 460, 473
CfoI GCGC 3 cut(s) 35, 97, 926
Cfr10I RCCGGY 1 cut(s) 471
Cfr13I GGNCC 2 cut(s) 453, 1022
CseI GACGC 3 cut(s) 112, 930, 1439
Csp6I GTAC 2 cut(s) 199, 1047
CviAII CATG 5 cut(s) 133, 730, 1337, 1586, 1631
CviQI GTAC 2 cut(s) 199, 1047
DdeI CTNAG 4 cut(s) 104, 386, 984, 1002
DpnI GATC 7 cut(s) 152, 206, 622, 1218, 1236, 1396, 1701
DpnII GATC 7 cut(s) 150, 204, 620, 1216, 1234, 1394, 1699
DriI GACNNNNNGTC 1 cut(s) 926
Eam1104I CTCTTC 3 cut(s) 530, 698, 1716
Eam1105I GACNNNNNGTC 1 cut(s) 926
EarI CTCTTC 3 cut(s) 530, 698, 1716
EciI GGCGGA 3 cut(s) 800, 979, 1070
Ecl136II GAGCTC 1 cut(s) 1583
Eco130I CCWWGG 1 cut(s) 132
Eco147I AGGCCT 2 cut(s) 314, 335
Eco24I GRGCYC 4 cut(s) 110, 222, 305, 1585
Eco47I GGWCC 1 cut(s) 453
Eco53kI GAGCTC 1 cut(s) 1583
Eco57I CTGAAG 2 cut(s) 933, 1205
Eco91I GGTNACC 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 1583
EcoO65I GGTNACC 1 cut(s) 136
EcoRI GAATTC 2 cut(s) 636, 904
EcoRII CCWGG 2 cut(s) 210, 1298
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 4 cut(s) 110, 222, 305, 1585
ErhI CCWWGG 1 cut(s) 132
Esp3I CGTCTC 3 cut(s) 130, 437, 913
FaeI CATG 5 cut(s) 136, 733, 1340, 1589, 1634
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FaqI GGGAC 1 cut(s) 581
FatI CATG 5 cut(s) 132, 729, 1336, 1585, 1630
Fnu4HI GCNGC 4 cut(s) 36, 177, 1359, 1422
FokI GGATG 1 cut(s) 899
FriOI GRGCYC 4 cut(s) 110, 222, 305, 1585
Fsp4HI GCNGC 4 cut(s) 36, 177, 1359, 1422
FspBI CTAG 1 cut(s) 525
FspI TGCGCA 1 cut(s) 34
GlaI GCGC 3 cut(s) 34, 96, 925
GluI GCNGC 4 cut(s) 36, 177, 1359, 1422
GsaI CCCAGC 1 cut(s) 579
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 3 cut(s) 314, 335, 1024
HapII CCGG 1 cut(s) 472
HgaI GACGC 3 cut(s) 112, 930, 1439
HhaI GCGC 3 cut(s) 35, 97, 926
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 5 cut(s) 136, 733, 1340, 1589, 1634
Hin6I GCGC 3 cut(s) 33, 95, 924
HinP1I GCGC 3 cut(s) 33, 95, 924
HincII GTYRAC 1 cut(s) 1543
HindII GTYRAC 1 cut(s) 1543
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 5 cut(s) 56, 397, 683, 743, 1061
HpaII CCGG 1 cut(s) 472
HphI GGTGA 4 cut(s) 130, 626, 692, 1210
Hpy166II GTNNAC 1 cut(s) 1543
Hpy188I TCNGA 7 cut(s) 307, 352, 910, 952, 1224, 1377, 1491
Hpy188III TCNNGA 7 cut(s) 148, 401, 624, 931, 1081, 1532, 1718
Hpy8I GTNNAC 1 cut(s) 1543
Hpy99I CGWCG 3 cut(s) 122, 311, 469
HpyCH4III ACNGT 7 cut(s) 680, 970, 1068, 1502, 1514, 1558, 1688
HpyCH4IV ACGT 2 cut(s) 446, 467
HpyCH4V TGCA 7 cut(s) 481, 793, 890, 1324, 1361, 1510, 1643
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 92, 468, 1014, 1430
HpyF3I CTNAG 4 cut(s) 104, 386, 984, 1002
HpySE526I ACGT 2 cut(s) 446, 467
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 5 cut(s) 136, 733, 1340, 1589, 1634
HspAI GCGC 3 cut(s) 33, 95, 924
KroI GCCGGC 1 cut(s) 471
KroNI GCCGGC 1 cut(s) 473
Kzo9I GATC 7 cut(s) 150, 204, 620, 1216, 1234, 1394, 1699
LguI GCTCTTC 1 cut(s) 530
LmnI GCTCC 5 cut(s) 308, 348, 820, 1580, 1672
Lsp1109I GCAGC 3 cut(s) 47, 1345, 1433
LweI GCATC 5 cut(s) 106, 490, 877, 1457, 1497
MaeI CTAG 1 cut(s) 525
MaeII ACGT 2 cut(s) 446, 467
MaeIII GTNAC 5 cut(s) 136, 674, 1294, 1349, 1496
MalI GATC 7 cut(s) 152, 206, 622, 1218, 1236, 1396, 1701
MboI GATC 7 cut(s) 150, 204, 620, 1216, 1234, 1394, 1699
MflI RGATCY 3 cut(s) 150, 204, 1216
MhlI GDGCHC 5 cut(s) 110, 222, 305, 1408, 1585
MlyI GAGTC 2 cut(s) 65, 692
MmeI TCCRAC 4 cut(s) 84, 330, 777, 1194
MroNI GCCGGC 1 cut(s) 471
MseI TTAA 6 cut(s) 243, 393, 1101, 1455, 1563, 1622
MslI CAYNNNNRTG 1 cut(s) 1481
MspI CCGG 1 cut(s) 472
MspR9I CCNGG 2 cut(s) 212, 1300
Mva1269I GAATGC 1 cut(s) 1149
MvaI CCWGG 2 cut(s) 212, 1300
MvnI CGCG 1 cut(s) 924
MwoI GCNNNNNNNGC 5 cut(s) 41, 92, 468, 1014, 1430
NaeI GCCGGC 1 cut(s) 473
NcoI CCATGG 1 cut(s) 132
NdeII GATC 7 cut(s) 150, 204, 620, 1216, 1234, 1394, 1699
NgoMIV GCCGGC 1 cut(s) 471
NlaIII CATG 5 cut(s) 136, 733, 1340, 1589, 1634
NlaIV GGNNCC 4 cut(s) 304, 344, 1023, 1668
NmeAIII GCCGAG 1 cut(s) 1173
NmuCI GTSAC 2 cut(s) 136, 1349
NsbI TGCGCA 1 cut(s) 34
PaqCI CACCTGC 1 cut(s) 1102
PceI AGGCCT 2 cut(s) 314, 335
PciSI GCTCTTC 1 cut(s) 530
PcsI WCGNNNNNNNCGW 1 cut(s) 752
PctI GAATGC 1 cut(s) 1149
PdiI GCCGGC 1 cut(s) 473
PfeI GAWTC 3 cut(s) 397, 743, 1061
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 4 cut(s) 37, 178, 1360, 1423
PleI GAGTC 2 cut(s) 64, 691
PpsI GAGTC 2 cut(s) 64, 691
PsiI TTATAA 2 cut(s) 1074, 1413
Psp124BI GAGCTC 1 cut(s) 1585
Psp6I CCWGG 2 cut(s) 210, 1298
PspEI GGTNACC 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 575
PspGI CCWGG 2 cut(s) 210, 1298
PspN4I GGNNCC 4 cut(s) 304, 344, 1023, 1668
PspPI GGNCC 2 cut(s) 453, 1022
PsuI RGATCY 3 cut(s) 150, 204, 1216
PsyI GACNNNGTC 1 cut(s) 122
RsaI GTAC 2 cut(s) 200, 1048
RsaNI GTAC 2 cut(s) 199, 1047
RseI CAYNNNNRTG 1 cut(s) 1481
SacI GAGCTC 1 cut(s) 1585
SapI GCTCTTC 1 cut(s) 530
SaqAI TTAA 6 cut(s) 243, 393, 1101, 1455, 1563, 1622
SatI GCNGC 4 cut(s) 36, 177, 1359, 1422
Sau3AI GATC 7 cut(s) 150, 204, 620, 1216, 1234, 1394, 1699
Sau96I GGNCC 2 cut(s) 453, 1022
SchI GAGTC 2 cut(s) 65, 692
ScrFI CCNGG 2 cut(s) 212, 1300
SduI GDGCHC 5 cut(s) 110, 222, 305, 1408, 1585
SfaNI GCATC 5 cut(s) 106, 490, 877, 1457, 1497
SinI GGWCC 1 cut(s) 453
SmiMI CAYNNNNRTG 1 cut(s) 1481
SmlI CTYRAG 1 cut(s) 1532
SmoI CTYRAG 1 cut(s) 1532
SseBI AGGCCT 2 cut(s) 314, 335
SsiI CCGC 9 cut(s) 141, 157, 162, 177, 456, 612, 785, 964, 1055
SspMI CTAG 1 cut(s) 525
SstI GAGCTC 1 cut(s) 1585
StuI AGGCCT 2 cut(s) 314, 335
StyD4I CCNGG 2 cut(s) 210, 1298
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 7 cut(s) 680, 970, 1068, 1502, 1514, 1558, 1688
TaiI ACGT 2 cut(s) 449, 470
TaqI TCGA 7 cut(s) 117, 147, 464, 623, 686, 746, 1594
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 3 cut(s) 397, 743, 1061
Tru1I TTAA 6 cut(s) 243, 393, 1101, 1455, 1563, 1622
Tru9I TTAA 6 cut(s) 243, 393, 1101, 1455, 1563, 1622
TscAI CASTG 3 cut(s) 1244, 1326, 1507
TseFI GTSAC 2 cut(s) 136, 1349
TseI GCWGC 3 cut(s) 35, 1358, 1421
Tsp45I GTSAC 2 cut(s) 136, 1349
TspDTI ATGAA 5 cut(s) 395, 428, 1185, 1431, 1647
TspGWI ACGGA 1 cut(s) 1064
TspRI CASTG 3 cut(s) 1244, 1326, 1507
Tth111I GACNNNGTC 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 453
XapI RAATTY 3 cut(s) 636, 904, 1635
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.