Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006840

Physical Location & Seq

Genomic Coordinates Reverse (-)

9028552 .. 9030060

Gene Structure 1509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1079100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAAAATAAAGGAAATGGAAGAACCAGAGCAAGAAGCTCGGCGGCTGAAATCTGTAGTAGAGGCCAAATACAAAGACTCCAATGTCAAATCAGCCCTCAAATATGCAAAACGTGCTGAGCGCCTGAGCCCAAGCTTGGAAGGCATCTCTTCCTTAAAGATCATCCGTACAGCCTCCCAAAGCCCCAATCCTGACTGGTACAACGTCCTGCAGGTGGAACCCTTTGCTCACACCAACACCATTAAGAAGAACTACAAGAAGCTCGCGTTTCTTCTCCACCCTGACAAGAATCCTCATGCTGGTTCCGAAGAGGCTTCCAAACTCGTCAACGAGGCCATTCGATTCCTTTCTGACAAGCTTAGGAGGAAGGAGTATGATATGAAGCTCAGGATAAAGATTCAGGATGAGAAAATTAAAGAGAGTGGTGTTGGGGGTTTAGGTTCTAGTATGGTGGTGGAAAGTGACACCTTTTGGACAGCCTGTTCAACATGCCGGCTTTTGCACCAGTTTGAAAGGAGGTATTTGGGGCATAATTTGGTTTGCCCGAGTTGTAAGAAGAGCTTTAAGGCTCTGGAGGTTGAAAATGGTGAGAATTTCAAGGTTAGGACTAGTGAGAGGTTAAGGAAAGTGAGTTTGGCATCAAAAGGGGGAATGAGTAGTGAAGGATTGGTTAGGAGAGTGAGTAACAGTGGTGAAATAAATGGCAGTACTGGTGGGAAAGGGAAAAGTGGTGTTTTGCAGAGGAAGGGTGAAGTGGGTACTGGTGATTTGGACAGTCAAGTGAGCGCTGGGAAAAAGAAAAGTGTTGTTTGGGAGAAGAAAGGTGAAGTCAGTACTGGGAGTTTGGGCAATCAAGCTAATGGTAGTGATGCTGGGGAACCGAGTGGTTGGAGGTTGAGGAGGAGAATGAGTAGTGTTGGAGAGGTGATGGAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

313

Amino Acids

34.65

Weight (kDa)

9.74

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	65 - 126	5e-18	DnaJ domain
Zn_ribbon_20	PF23551	157 - 190	5.4e-07	Zinc beta-ribbon domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35540
fragaria_vesca	FvH4_5g23220 FvH4_5g23220
malus_domestica	MD12G1084400.v1.1 MD14G1079000.v1.1 MD14G1079100.v1.1
prunus_persica	Prupe.8G141600_v2.0.a1 Prupe.8G141600_v2.0.a1 Prupe.8G141600_v2.0.a1 Prupe.8G141600_v2.0.a1 Prupe.8G141600_v2.0.a1 Prupe.8G141600_v2.0.a1
pyrus_communis	pycom12g07150 pycom14g06770
rosa_chinensis	RchiOBHm_Chr7g0212151
rosa_laevigata	RLG00000002922
rosa_multiflora	Rmu_co8425879.1_g000001 Rmu_sc0002283.1_g000051 Rmu_sc0013167.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247070
rosa_rugosa	Rorug07G0131600
rosa_samantha	Rh7AG264500 Rh7BG258400 Rh7CG281000 Rh7DG270900
rosa_wichuraiana	Rw7G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
AasI	GACNNNNNNGTC	1 cut(s)	83
Acc36I	ACCTGC	1 cut(s)	202
AccII	CGCG	1 cut(s)	266
AciI	CCGC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	592
AfaI	GTAC	5 cut(s)	169, 200, 709, 760, 835
AfeI	AGCGCT	1 cut(s)	787
AfiI	CCNNNNNNNGG	3 cut(s)	136, 214, 299
AgsI	TTSAA	4 cut(s)	486, 512, 581, 598
AhlI	ACTAGT	1 cut(s)	608
AjuI	GAANNNNNNNTTGG	2 cut(s)	617, 649
AloI	GAACNNNNNNTCC	2 cut(s)	466, 498
AluBI	AGCT	7 cut(s)	38, 135, 262, 358, 385, 561, 857
AluI	AGCT	7 cut(s)	38, 135, 262, 358, 385, 561, 857
Ama87I	CYCGRG	1 cut(s)	544
Aor51HI	AGCGCT	1 cut(s)	787
AoxI	GGCC	2 cut(s)	63, 333
ApoI	RAATTY	1 cut(s)	592
AspLEI	GCGC	2 cut(s)	123, 788
AsuHPI	GGTGA	6 cut(s)	599, 704, 761, 776, 836, 937
AvaI	CYCGRG	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	131
BccI	CCATC	1 cut(s)	922
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BcuI	ACTAGT	1 cut(s)	608
BfaI	CTAG	2 cut(s)	444, 609
BfmI	CTRYAG	2 cut(s)	54, 209
BfoI	RGCGCY	2 cut(s)	124, 789
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	1 cut(s)	44
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	45
BmcAI	AGTACT	2 cut(s)	709, 835
BmeT110I	CYCGRG	1 cut(s)	544
BmiI	GGNNCC	3 cut(s)	219, 304, 879
BmrI	ACTGGG	1 cut(s)	846
BmsI	GCATC	3 cut(s)	153, 647, 859
BmuI	ACTGGG	1 cut(s)	846
BpmI	CTGGAG	1 cut(s)	593
Bpu10I	CCTNAGC	3 cut(s)	125, 359, 386
Bpu1102I	GCTNAGC	1 cut(s)	117
BsaXI	ACNNNNNCTCC	6 cut(s)	62, 92, 667, 697, 895, 925
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 214, 299
Bse118I	RCCGGY	1 cut(s)	492
Bse1I	ACTGG	5 cut(s)	200, 505, 715, 766, 841
BseGI	GGATG	2 cut(s)	162, 409
BseLI	CCNNNNNNNGG	3 cut(s)	136, 214, 299
BseMII	CTCAG	3 cut(s)	108, 116, 400
BseNI	ACTGG	5 cut(s)	200, 505, 715, 766, 841
BseRI	GAGGAG	2 cut(s)	913, 916
BseYI	CCCAGC	2 cut(s)	788, 872
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	65, 335
BsiHKCI	CYCGRG	1 cut(s)	544
BsiSI	CCGG	1 cut(s)	493
BslI	CCNNNNNNNGG	3 cut(s)	136, 214, 299
BsnI	GGCC	2 cut(s)	65, 335
BsoBI	CYCGRG	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	159
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	2 cut(s)	65, 335
BspCNI	CTCAG	3 cut(s)	109, 117, 399
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	3 cut(s)	219, 304, 879
BspMAI	CTGCAG	1 cut(s)	213
BspMI	ACCTGC	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	551
BsrFI	RCCGGY	1 cut(s)	492
BsrI	ACTGG	5 cut(s)	200, 505, 715, 766, 841
BssAI	RCCGGY	1 cut(s)	492
BssMI	GATC	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	689, 776
Bst6I	CTCTTC	3 cut(s)	154, 303, 551
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	264, 494
BstDEI	CTNAG	4 cut(s)	117, 125, 359, 386
BstF5I	GGATG	2 cut(s)	162, 409
BstFNI	CGCG	1 cut(s)	266
BstH2I	RGCGCY	2 cut(s)	124, 789
BstHHI	GCGC	2 cut(s)	123, 788
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 141
BstNSI	RCATGY	1 cut(s)	492
BstSFI	CTRYAG	2 cut(s)	54, 209
BstUI	CGCG	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	65, 335
BtsCI	GGATG	2 cut(s)	162, 409
BtsIMutI	CAGTG	1 cut(s)	694
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	264, 494
CfoI	GCGC	2 cut(s)	123, 788
Cfr10I	RCCGGY	1 cut(s)	492
Csp6I	GTAC	5 cut(s)	168, 199, 708, 759, 834
CviAII	CATG	2 cut(s)	296, 489
CviQI	GTAC	5 cut(s)	168, 199, 708, 759, 834
DdeI	CTNAG	4 cut(s)	117, 125, 359, 386
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eam1104I	CTCTTC	3 cut(s)	154, 303, 551
EarI	CTCTTC	3 cut(s)	154, 303, 551
Eco24I	GRGCYC	1 cut(s)	131
Eco47III	AGCGCT	1 cut(s)	787
Eco88I	CYCGRG	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	2 cut(s)	299, 492
FaiI	YATR	7 cut(s)	105, 297, 375, 380, 449, 490, 531
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FatI	CATG	2 cut(s)	295, 488
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	2 cut(s)	149, 416
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	2 cut(s)	444, 609
GlaI	GCGC	2 cut(s)	122, 787
GluI	GCNGC	1 cut(s)	44
GsaI	CCCAGC	2 cut(s)	792, 876
GsuI	CTGGAG	1 cut(s)	593
HaeII	RGCGCY	2 cut(s)	124, 789
HaeIII	GGCC	2 cut(s)	65, 335
HapII	CCGG	1 cut(s)	493
HhaI	GCGC	2 cut(s)	123, 788
Hin1II	CATG	2 cut(s)	299, 492
Hin6I	GCGC	2 cut(s)	121, 786
HinP1I	GCGC	2 cut(s)	121, 786
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	2 cut(s)	133, 356
HinfI	GANTC	4 cut(s)	77, 289, 342, 397
HpaII	CCGG	1 cut(s)	493
HphI	GGTGA	6 cut(s)	599, 704, 761, 776, 836, 937
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	2 cut(s)	307, 352
Hpy188III	TCNNGA	4 cut(s)	191, 388, 401, 572
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	4 cut(s)	134, 361, 656, 739
HpyCH4III	ACNGT	2 cut(s)	689, 776
HpyCH4IV	ACGT	2 cut(s)	112, 204
HpyCH4V	TGCA	4 cut(s)	107, 211, 502, 739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 141
HpyF3I	CTNAG	4 cut(s)	117, 125, 359, 386
HpySE526I	ACGT	2 cut(s)	112, 204
Hsp92II	CATG	2 cut(s)	299, 492
HspAI	GCGC	2 cut(s)	121, 786
KroI	GCCGGC	1 cut(s)	492
KroNI	GCCGGC	1 cut(s)	494
Kzo9I	GATC	1 cut(s)	159
LguI	GCTCTTC	1 cut(s)	551
LweI	GCATC	3 cut(s)	153, 647, 859
MaeI	CTAG	2 cut(s)	444, 609
MaeII	ACGT	2 cut(s)	112, 204
MaeIII	GTNAC	2 cut(s)	461, 683
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	7 cut(s)	32, 141, 259, 263, 320, 568, 829
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	3 cut(s)	411, 532, 592
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	869, 898
MroNI	GCCGGC	1 cut(s)	492
MseI	TTAA	5 cut(s)	155, 243, 414, 564, 620
MspI	CCGG	1 cut(s)	493
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	113, 141
NaeI	GCCGGC	1 cut(s)	494
NdeII	GATC	1 cut(s)	159
NgoMIV	GCCGGC	1 cut(s)	492
NlaIII	CATG	2 cut(s)	299, 492
NlaIV	GGNNCC	3 cut(s)	219, 304, 879
NmeAIII	GCCGAG	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	461
NspI	RCATGY	1 cut(s)	492
PaqCI	CACCTGC	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	551
PdiI	GCCGGC	1 cut(s)	494
PfeI	GAWTC	3 cut(s)	289, 342, 397
PkrI	GCNGC	1 cut(s)	45
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PspFI	CCCAGC	2 cut(s)	788, 872
PspN4I	GGNNCC	3 cut(s)	219, 304, 879
PstI	CTGCAG	1 cut(s)	213
RsaI	GTAC	5 cut(s)	169, 200, 709, 760, 835
RsaNI	GTAC	5 cut(s)	168, 199, 708, 759, 834
SapI	GCTCTTC	1 cut(s)	551
SaqAI	TTAA	5 cut(s)	155, 243, 414, 564, 620
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	159
SbfI	CCTGCAGG	1 cut(s)	213
ScaI	AGTACT	2 cut(s)	709, 835
SchI	GAGTC	1 cut(s)	71
SdaI	CCTGCAGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	131
SfaNI	GCATC	3 cut(s)	153, 647, 859
SfcI	CTRYAG	2 cut(s)	54, 209
SpeI	ACTAGT	1 cut(s)	608
Sse8387I	CCTGCAGG	1 cut(s)	213
Sse9I	AATT	3 cut(s)	411, 532, 592
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	2 cut(s)	444, 609
TaaI	ACNGT	2 cut(s)	689, 776
TaiI	ACGT	2 cut(s)	115, 207
TaqI	TCGA	1 cut(s)	340
TasI	AATT	3 cut(s)	411, 532, 592
TatI	WGTACW	2 cut(s)	707, 833
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	3 cut(s)	289, 342, 397
Tru1I	TTAA	5 cut(s)	155, 243, 414, 564, 620
Tru9I	TTAA	5 cut(s)	155, 243, 414, 564, 620
TscAI	CASTG	1 cut(s)	694
TseFI	GTSAC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	2 cut(s)	17, 395
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	694
XapI	RAATTY	1 cut(s)	592
XceI	RCATGY	1 cut(s)	492
XspI	CTAG	2 cut(s)	444, 609
ZrmI	AGTACT	2 cut(s)	709, 835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.