RLG00000002922

Domain of unknown function (DUF3444)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
41808086 .. 41809831
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002922

Sequence Viewer

Length: 1662 bp
ATGGAAGAAGCAGAAGCATTAGAGCTAAAATGCGCAGCAGAAGCCAAATACAAAGAGTCCAACTTCAAGTCAGCCCTCAAATACGCCAAGCGAGCGATGCGCCTGAGCCCGAACCTGGACGGCGTCTCCTCCATGGTAACCGCCTTCGAGATCCTCCGCACAGCCCACAAGAACGCCGCCCCAAATCCTCCCAACTGGTACAAGATCCTCCAGGTAGAGCCCTTTGCCCACATCAACACCATTAAGACCAGATACAAGAAGCTCGCTTTTCTTCTCCACCCTGATAAGAACCCCCATTTGGGCTCCGACGAGGCCTTCAAGCTTGTAGGGGAGGCCTTTCGGTTCCTTTCGGATAGGATTAGGAGGAAGGAGTATGATATGAAGCTTAGGATTAAGATTCAGGATAGGAAGATGAAGGAGAGTGGGGGTTTAGGGTTTGGGGAGACGTTTTGGACGGCGTGCTCGACGTGCCGGCTTTTGCATCAGTTTGAGAGGAGGTATTTGGGGCATAATTTGGTTTGCCCTAGCTGTAAGAAGAGCTTTGAGGCTGTGGAGGTTGAGGGTGGGGACAATGCTGGGGTTAGGAGTAGTGAGAGGTTGAGGAAAATGGGCGGTGAAGGATCGAGAGGGAGATGGAGAGGGAGTGGTGGTGGGAATGTGGAGAAGGAAGTGAGTGATGGTAATGGTGAGTTGAGGAGTAGGCTGAGGAAGAGAATGAGTAGTGTAGGAGAGGTCATGGAGAGGTGTGAAACGAAGAAGGCGAAAGTAGATGAGGAACTGATGACATTGGCGGAATTGCAGTTGGAGATCAAGCGGAAGGCACAGCAGCAGAAGAAGAAGTTGATGAGGAAGGAGAAGGATAAAAGAGAGAAGGAGAAGGATAGGCAGAAGGATGCAAAGAAAGGTAAGAATTCAGAAGTTGAGAGACGCACTGTTTCGAAGAAAGGTAAGACTTCAGAAGTTGAGAGGCGGACTGTTTTGAAGAAGGCTAAGGATTTGGGAAGTGCTAAGAGCAGGAAAAGCAAGGGGCCAAAGAGTGAAGATTTGGAGAGTACGGAGGCGGAGGATTCACAGTTTTATAATTTCAAGAAAGATAAGAGGAGTTTTAAGAAAGGGCAGGTGAAAATTAGTTGGTTGGATCTTCAGAATAATGGGGATCAGTGGTTGGCTTCTTGGGAGAAAATGGGATTGCCTGTGCCTTGTGGAAGGTTTAAAGTTACCAGGCAGACCACCACTAATTCAGTGCATATATTTTCTCATGTTGTGGATTGTGACAGAGCTGCAAGAGAGATTTATCGGATTTATCCAAAGAAGGGATCGGTTTGGGCACTTTATAATGAAGCAGCTTTTGACGCTGATGGAGGAAATCTGTTGGTTAAAGAGAAGCGATGCTATGACATAGTTGTGTTTCTGACAAGTTACAGTGAGATGCACGGTTTGAGTATGGGGTATCTTGAGAAGGTTGATGGGTTCAACACGGTATTTAAGAGAAGGGAGATTGGAGCTCATGCTATTCGATGTTTAGAGAAAGATGATGTGAGGTTAATTTCACATGAAATTCCTGCAAAGAAGCTCTCTGGTAGCGAGGCTCCAAACCTTTCGAAAGACTGTTGGGAACTTGATCCTGCTTCTCTTCCTCTGGATTTGCTTACATTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

554

Amino Acids

63.13

Weight (kDa)

9.58

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 65 - 126 7.5e-17 DnaJ domain
Zn_ribbon_20 PF23551 150 - 184 3.2e-07 Zinc beta-ribbon domain
DUF3444 PF11926 373 - 529 2.4e-40 Domain of unknown function (DUF3444)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1080, 1335
AarI CACCTGC 1 cut(s) 1108
Acc16I TGCGCA 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 1108
AciI CCGC 8 cut(s) 141, 157, 177, 612, 791, 814, 970, 1061
AclWI GGATC 7 cut(s) 145, 199, 628, 1146, 1164, 1324, 1616
AcsI RAATTY 2 cut(s) 910, 1557
AcuI CTGAAG 2 cut(s) 939, 1127
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 2 cut(s) 200, 1054
AfiI CCNNNNNNNGG 4 cut(s) 115, 298, 299, 1313
AgsI TTSAA 5 cut(s) 67, 319, 982, 1087, 1474
AjiI CACGTC 1 cut(s) 468
AjnI CCWGG 3 cut(s) 114, 210, 1220
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
Alw21I GWGCWC 2 cut(s) 464, 1507
Alw26I GTCTC 3 cut(s) 130, 437, 919
AlwI GGATC 7 cut(s) 145, 199, 628, 1146, 1164, 1324, 1616
AoxI GGCC 3 cut(s) 312, 333, 1028
ApeKI GCWGC 4 cut(s) 35, 826, 1280, 1343
ApoI RAATTY 2 cut(s) 910, 1557
AspLEI GCGC 2 cut(s) 35, 102
AspS9I GGNCC 1 cut(s) 1028
AsuHPI GGTGA 3 cut(s) 626, 698, 1132
AsuII TTCGAA 2 cut(s) 938, 1601
BaeGI GKGCMC 1 cut(s) 1330
BanII GRGCYC 4 cut(s) 110, 222, 305, 1507
Bbv12I GWGCWC 2 cut(s) 464, 1507
BbvCI CCTCAGC 1 cut(s) 704
BbvI GCAGC 4 cut(s) 47, 838, 1267, 1355
BccI CCATC 4 cut(s) 627, 671, 1352, 1460
BceAI ACGGC 2 cut(s) 136, 471
BciT130I CCWGG 3 cut(s) 116, 212, 1222
BcoDI GTCTC 3 cut(s) 130, 437, 919
BfaI CTAG 1 cut(s) 525
BfuAI ACCTGC 1 cut(s) 1108
BisI GCNGC 5 cut(s) 36, 177, 827, 1281, 1344
BlsI GCNGC 5 cut(s) 37, 178, 828, 1282, 1345
Bme1390I CCNGG 3 cut(s) 116, 212, 1222
BmgBI CACGTC 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 1028
BmiI GGNNCC 4 cut(s) 304, 344, 1029, 1590
BmrFI CCNGG 3 cut(s) 116, 212, 1222
BmsI GCATC 5 cut(s) 87, 490, 883, 1379, 1419
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 4 cut(s) 104, 386, 704, 990
Bpu14I TTCGAA 2 cut(s) 938, 1601
BpuEI CTTGAG 1 cut(s) 1475
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 6 cut(s) 110, 140, 628, 634, 658, 664
Bsc4I CCNNNNNNNGG 4 cut(s) 115, 298, 299, 1313
Bse118I RCCGGY 1 cut(s) 471
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 3 cut(s) 116, 212, 1222
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 898
BseLI CCNNNNNNNGG 4 cut(s) 115, 298, 299, 1313
BseMII CTCAG 2 cut(s) 95, 695
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 4 cut(s) 118, 508, 709, 1114
BseSI GKGCMC 1 cut(s) 1330
BseXI GCAGC 4 cut(s) 47, 838, 1267, 1355
BseYI CCCAGC 1 cut(s) 575
BshFI GGCC 3 cut(s) 314, 335, 1030
BsiHKAI GWGCWC 2 cut(s) 464, 1507
BsiSI CCGG 1 cut(s) 472
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 4 cut(s) 115, 298, 299, 1313
BsmAI GTCTC 3 cut(s) 130, 437, 919
BsmBI CGTCTC 3 cut(s) 130, 437, 919
BsmFI GGGAC 1 cut(s) 581
BsnI GGCC 3 cut(s) 314, 335, 1030
Bsp119I TTCGAA 2 cut(s) 938, 1601
Bsp1286I GDGCHC 6 cut(s) 110, 222, 305, 464, 1330, 1507
Bsp143I GATC 8 cut(s) 150, 204, 620, 807, 1138, 1156, 1316, 1621
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 8 cut(s) 141, 157, 177, 612, 791, 814, 970, 1061
BspANI GGCC 3 cut(s) 314, 335, 1030
BspCNI CTCAG 2 cut(s) 96, 696
BspLI GGNNCC 4 cut(s) 304, 344, 1029, 1590
BspMI ACCTGC 1 cut(s) 1108
BspPI GGATC 7 cut(s) 145, 199, 628, 1146, 1164, 1324, 1616
BspQI GCTCTTC 1 cut(s) 530
BspT104I TTCGAA 2 cut(s) 938, 1601
BsrFI RCCGGY 1 cut(s) 471
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 471
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 8 cut(s) 150, 204, 620, 807, 1138, 1156, 1316, 1621
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 3 cut(s) 116, 212, 1222
Bst4CI ACNGT 7 cut(s) 934, 976, 1074, 1424, 1436, 1480, 1610
Bst6I CTCTTC 3 cut(s) 530, 704, 1638
BstACI GRCGYC 1 cut(s) 123
BstBI TTCGAA 2 cut(s) 938, 1601
BstC8I GCNNGC 4 cut(s) 93, 264, 460, 473
BstDEI CTNAG 5 cut(s) 104, 386, 704, 990, 1008
BstDSI CCRYGG 1 cut(s) 132
BstEII GGTNACC 1 cut(s) 136
BstF5I GGATG 1 cut(s) 898
BstHHI GCGC 2 cut(s) 35, 102
BstKTI GATC 8 cut(s) 153, 207, 623, 810, 1141, 1159, 1319, 1624
BstMAI GTCTC 3 cut(s) 130, 437, 919
BstMBI GATC 8 cut(s) 150, 204, 620, 807, 1138, 1156, 1316, 1621
BstMWI GCNNNNNNNGC 6 cut(s) 41, 92, 97, 468, 1020, 1352
BstNI CCWGG 3 cut(s) 116, 212, 1222
BstPI GGTNACC 1 cut(s) 136
BstSCI CCNGG 3 cut(s) 114, 210, 1220
BstSLI GKGCMC 1 cut(s) 1330
BstV1I GCAGC 4 cut(s) 47, 838, 1267, 1355
BstX2I RGATCY 3 cut(s) 150, 204, 1138
BstYI RGATCY 3 cut(s) 150, 204, 1138
BsuRI GGCC 3 cut(s) 314, 335, 1030
BtgI CCRYGG 1 cut(s) 132
BtgZI GCGATG 2 cut(s) 110, 1402
BtrI CACGTC 1 cut(s) 468
BtsCI GGATG 1 cut(s) 898
BtsIMutI CAGTG 4 cut(s) 930, 1166, 1248, 1429
BveI ACCTGC 1 cut(s) 1108
Cac8I GCNNGC 4 cut(s) 93, 264, 460, 473
CfoI GCGC 2 cut(s) 35, 102
Cfr10I RCCGGY 1 cut(s) 471
Cfr13I GGNCC 1 cut(s) 1028
CseI GACGC 3 cut(s) 112, 936, 1361
Csp6I GTAC 2 cut(s) 199, 1053
CviAII CATG 5 cut(s) 133, 736, 1259, 1508, 1553
CviQI GTAC 2 cut(s) 199, 1053
DdeI CTNAG 5 cut(s) 104, 386, 704, 990, 1008
DpnI GATC 8 cut(s) 152, 206, 622, 809, 1140, 1158, 1318, 1623
DpnII GATC 8 cut(s) 150, 204, 620, 807, 1138, 1156, 1316, 1621
DraI TTTAAA 1 cut(s) 1213
Eam1104I CTCTTC 3 cut(s) 530, 704, 1638
EarI CTCTTC 3 cut(s) 530, 704, 1638
EciI GGCGGA 3 cut(s) 806, 985, 1076
Ecl136II GAGCTC 1 cut(s) 1505
Eco130I CCWWGG 1 cut(s) 132
Eco147I AGGCCT 2 cut(s) 314, 335
Eco24I GRGCYC 4 cut(s) 110, 222, 305, 1507
Eco53kI GAGCTC 1 cut(s) 1505
Eco57I CTGAAG 2 cut(s) 939, 1127
Eco91I GGTNACC 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 1505
EcoO65I GGTNACC 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 910
EcoRII CCWGG 3 cut(s) 114, 210, 1220
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 4 cut(s) 110, 222, 305, 1507
ErhI CCWWGG 1 cut(s) 132
Esp3I CGTCTC 3 cut(s) 130, 437, 919
FaeI CATG 5 cut(s) 136, 739, 1262, 1511, 1556
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FaqI GGGAC 1 cut(s) 581
FatI CATG 5 cut(s) 132, 735, 1258, 1507, 1552
Fnu4HI GCNGC 5 cut(s) 36, 177, 827, 1281, 1344
FokI GGATG 1 cut(s) 905
FriOI GRGCYC 4 cut(s) 110, 222, 305, 1507
Fsp4HI GCNGC 5 cut(s) 36, 177, 827, 1281, 1344
FspBI CTAG 1 cut(s) 525
FspI TGCGCA 1 cut(s) 34
GlaI GCGC 2 cut(s) 34, 101
GluI GCNGC 5 cut(s) 36, 177, 827, 1281, 1344
GsaI CCCAGC 1 cut(s) 579
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 3 cut(s) 314, 335, 1030
HapII CCGG 1 cut(s) 472
HgaI GACGC 3 cut(s) 112, 936, 1361
HhaI GCGC 2 cut(s) 35, 102
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 5 cut(s) 136, 739, 1262, 1511, 1556
Hin6I GCGC 2 cut(s) 33, 100
HinP1I GCGC 2 cut(s) 33, 100
HindIII AAGCTT 2 cut(s) 320, 383
HinfI GANTC 3 cut(s) 56, 397, 1067
HpaII CCGG 1 cut(s) 472
HphI GGTGA 3 cut(s) 626, 698, 1132
Hpy188I TCNGA 7 cut(s) 307, 352, 916, 958, 1146, 1299, 1413
Hpy188III TCNNGA 6 cut(s) 148, 401, 624, 1087, 1454, 1640
Hpy99I CGWCG 2 cut(s) 311, 469
HpyCH4III ACNGT 7 cut(s) 934, 976, 1074, 1424, 1436, 1480, 1610
HpyCH4IV ACGT 2 cut(s) 446, 467
HpyCH4V TGCA 7 cut(s) 481, 799, 896, 1246, 1283, 1432, 1565
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 92, 97, 468, 1020, 1352
HpyF3I CTNAG 5 cut(s) 104, 386, 704, 990, 1008
HpySE526I ACGT 2 cut(s) 446, 467
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 5 cut(s) 136, 739, 1262, 1511, 1556
HspAI GCGC 2 cut(s) 33, 100
KroI GCCGGC 1 cut(s) 471
KroNI GCCGGC 1 cut(s) 473
Kzo9I GATC 8 cut(s) 150, 204, 620, 807, 1138, 1156, 1316, 1621
LguI GCTCTTC 1 cut(s) 530
LmnI GCTCC 3 cut(s) 308, 1502, 1594
Lsp1109I GCAGC 4 cut(s) 47, 838, 1267, 1355
LweI GCATC 5 cut(s) 87, 490, 883, 1379, 1419
MaeI CTAG 1 cut(s) 525
MaeII ACGT 2 cut(s) 446, 467
MaeIII GTNAC 4 cut(s) 136, 1216, 1271, 1418
MalI GATC 8 cut(s) 152, 206, 622, 809, 1140, 1158, 1318, 1623
MboI GATC 8 cut(s) 150, 204, 620, 807, 1138, 1156, 1316, 1621
MflI RGATCY 3 cut(s) 150, 204, 1138
MhlI GDGCHC 6 cut(s) 110, 222, 305, 464, 1330, 1507
MluCI AATT 8 cut(s) 511, 794, 910, 1081, 1125, 1237, 1545, 1557
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 4 cut(s) 84, 330, 783, 1116
MroNI GCCGGC 1 cut(s) 471
MseI TTAA 7 cut(s) 243, 393, 1107, 1212, 1377, 1485, 1544
MslI CAYNNNNRTG 1 cut(s) 1403
MspI CCGG 1 cut(s) 472
MspR9I CCNGG 3 cut(s) 116, 212, 1222
MvaI CCWGG 3 cut(s) 116, 212, 1222
MwoI GCNNNNNNNGC 6 cut(s) 41, 92, 97, 468, 1020, 1352
NaeI GCCGGC 1 cut(s) 473
NcoI CCATGG 1 cut(s) 132
NdeII GATC 8 cut(s) 150, 204, 620, 807, 1138, 1156, 1316, 1621
NgoMIV GCCGGC 1 cut(s) 471
NlaIII CATG 5 cut(s) 136, 739, 1262, 1511, 1556
NlaIV GGNNCC 4 cut(s) 304, 344, 1029, 1590
NmuCI GTSAC 1 cut(s) 1271
NsbI TGCGCA 1 cut(s) 34
NspV TTCGAA 2 cut(s) 938, 1601
PaqCI CACCTGC 1 cut(s) 1108
PceI AGGCCT 2 cut(s) 314, 335
PciSI GCTCTTC 1 cut(s) 530
PcsI WCGNNNNNNNCGW 2 cut(s) 461, 758
PdiI GCCGGC 1 cut(s) 473
PfeI GAWTC 2 cut(s) 397, 1067
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 5 cut(s) 37, 178, 828, 1282, 1345
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PsiI TTATAA 2 cut(s) 1080, 1335
Psp124BI GAGCTC 1 cut(s) 1507
Psp6I CCWGG 3 cut(s) 114, 210, 1220
PspEI GGTNACC 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 575
PspGI CCWGG 3 cut(s) 114, 210, 1220
PspN4I GGNNCC 4 cut(s) 304, 344, 1029, 1590
PspPI GGNCC 1 cut(s) 1028
PsuI RGATCY 3 cut(s) 150, 204, 1138
PsyI GACNNNGTC 1 cut(s) 122
RsaI GTAC 2 cut(s) 200, 1054
RsaNI GTAC 2 cut(s) 199, 1053
RseI CAYNNNNRTG 1 cut(s) 1403
SacI GAGCTC 1 cut(s) 1507
SapI GCTCTTC 1 cut(s) 530
SaqAI TTAA 7 cut(s) 243, 393, 1107, 1212, 1377, 1485, 1544
SatI GCNGC 5 cut(s) 36, 177, 827, 1281, 1344
Sau3AI GATC 8 cut(s) 150, 204, 620, 807, 1138, 1156, 1316, 1621
Sau96I GGNCC 1 cut(s) 1028
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 3 cut(s) 116, 212, 1222
SduI GDGCHC 6 cut(s) 110, 222, 305, 464, 1330, 1507
SfaNI GCATC 5 cut(s) 87, 490, 883, 1379, 1419
SfuI TTCGAA 2 cut(s) 938, 1601
SmiMI CAYNNNNRTG 1 cut(s) 1403
SmlI CTYRAG 1 cut(s) 1454
SmoI CTYRAG 1 cut(s) 1454
Sse9I AATT 8 cut(s) 511, 794, 910, 1081, 1125, 1237, 1545, 1557
SseBI AGGCCT 2 cut(s) 314, 335
SsiI CCGC 8 cut(s) 141, 157, 177, 612, 791, 814, 970, 1061
SspMI CTAG 1 cut(s) 525
SstI GAGCTC 1 cut(s) 1507
StuI AGGCCT 2 cut(s) 314, 335
StyD4I CCNGG 3 cut(s) 114, 210, 1220
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 7 cut(s) 934, 976, 1074, 1424, 1436, 1480, 1610
TaiI ACGT 2 cut(s) 449, 470
TaqI TCGA 6 cut(s) 147, 464, 623, 938, 1516, 1601
TasI AATT 8 cut(s) 511, 794, 910, 1081, 1125, 1237, 1545, 1557
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 2 cut(s) 397, 1067
Tru1I TTAA 7 cut(s) 243, 393, 1107, 1212, 1377, 1485, 1544
Tru9I TTAA 7 cut(s) 243, 393, 1107, 1212, 1377, 1485, 1544
TscAI CASTG 4 cut(s) 937, 1166, 1248, 1429
TseFI GTSAC 1 cut(s) 1271
TseI GCWGC 4 cut(s) 35, 826, 1280, 1343
Tsp45I GTSAC 1 cut(s) 1271
TspDTI ATGAA 4 cut(s) 395, 428, 1353, 1569
TspGWI ACGGA 1 cut(s) 1070
TspRI CASTG 4 cut(s) 937, 1166, 1248, 1429
Tth111I GACNNNGTC 1 cut(s) 122
XapI RAATTY 2 cut(s) 910, 1557
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.