Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008411

Physical Location & Seq

Genomic Coordinates Forward (+)

15048885 .. 15050323

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCAATCATCACTTTCATTTTCTTGTGGTGTCAAGTCAACGATGGCGAAATCTCCGGTGGAAGTGAATCTGATACCAATCGAAGCTACACCTGAGACCTTCGCAGAGTATGGTCAAGTCATCGAAGCCTCTCGTGATGGGGCCGGTTACGGTCCCAACGACGCTCAATTGGATCTCTCTAAAGGAATCCCACGGCTCTATATACTTAGGCTGAAAGAAACACCCTTAGGGTTTTTCAAGATCACGCATCACGCAAAGGTGACACAGTGTCTAGGATCAATAGGAGGTGATATTTGGTATATGGGAGTGGCTAAGCCATCTCTTATTGAAGATGATGATGATGGAAGGAGAGTAGATACAGTAAAAGCAAAGTCTGGTCACTTGTACATTCCACCTGAGGTGGAAGAGATTCGCGTCTTCAGGTTCTCGGGACCAAAGTTTGTGAAACTGCACCGTGGTACATGGCATGCTGGACCCTTGTTTAGTGGCAGCTCCATCATGGATTTCTACAACTTAGAACTCAGCAACACAAATGTGGTGGATCACACGTCACATGATTTCACGAAGAATAATGGAGTCAGCTTCCGCTTTGACACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.03

Weight (kDa)

6.15

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35810 AT2G35810 AT2G35820 AT2G35820 AT2G35830 AT2G35830
fragaria_vesca	FvH4_7g20150
malus_domestica	MD07G1179100.v1.1
prunus_persica	Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0364101
rosa_laevigata	RLG00000027516
rosa_multiflora	Rmu_sc0000071.1_g000020 Rmu_sc0011704.1_g000002 Rmu_sc0038795.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292640
rosa_rugosa	Rorug01G0313600
rosa_samantha	Rh1AG321000 Rh1BG284200 Rh1CG300600 Rh1DG315600
rosa_wichuraiana	Rw1G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	414
AciI	CCGC	1 cut(s)	586
AclWI	GGATC	3 cut(s)	180, 283, 549
AcuI	CTGAAG	1 cut(s)	403
AfaI	GTAC	2 cut(s)	386, 460
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	2 cut(s)	238, 329
AhdI	GACNNNNNGTC	1 cut(s)	267
AjiI	CACGTC	1 cut(s)	549
AleI	CACNNNNGTG	1 cut(s)	533
AluBI	AGCT	3 cut(s)	86, 492, 582
AluI	AGCT	3 cut(s)	86, 492, 582
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	3 cut(s)	180, 283, 549
Ama87I	CYCGRG	1 cut(s)	427
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	489
Asp700I	GAANNNNTTC	1 cut(s)	408
AspS9I	GGNCC	4 cut(s)	141, 152, 431, 473
AsuHPI	GGTGA	2 cut(s)	271, 299
AvaI	CYCGRG	1 cut(s)	427
AvaII	GGWCC	3 cut(s)	152, 431, 473
AxyI	CCTNAGG	2 cut(s)	226, 396
BauI	CACGAG	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	5 cut(s)	37, 131, 325, 335, 503
BceAI	ACGGC	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	1 cut(s)	272
BisI	GCNGC	1 cut(s)	490
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	491
Bme18I	GGWCC	3 cut(s)	152, 431, 473
BmeRI	GACNNNNNGTC	1 cut(s)	267
BmeT110I	CYCGRG	1 cut(s)	427
BmgBI	CACGTC	1 cut(s)	549
BmgT120I	GGNCC	4 cut(s)	141, 152, 431, 473
BmiI	GGNNCC	4 cut(s)	142, 154, 432, 475
BmsI	GCATC	1 cut(s)	256
BpiI	GAAGAC	1 cut(s)	409
Bpu1102I	GCTNAGC	1 cut(s)	312
BsaBI	GATNNNNATC	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	191, 454
BsaWI	WCCGGW	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	143
Bse21I	CCTNAGG	2 cut(s)	226, 396
Bse8I	GATNNNNATC	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	191, 454
BseJI	GATNNNNATC	1 cut(s)	77
BseMII	CTCAG	3 cut(s)	84, 387, 535
BseXI	GCAGC	1 cut(s)	501
BsgI	GTGCAG	1 cut(s)	434
Bsh1236I	CGCG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	427
BsiSI	CCGG	2 cut(s)	56, 144
BslFI	GGGAC	2 cut(s)	138, 444
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	2 cut(s)	138, 444
BsnI	GGCC	1 cut(s)	143
Bso31I	GGTCTC	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	427
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	4 cut(s)	172, 240, 275, 541
Bsp1720I	GCTNAGC	1 cut(s)	312
BspACI	CCGC	1 cut(s)	586
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	3 cut(s)	85, 388, 534
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	4 cut(s)	142, 154, 432, 475
BspPI	GGATC	3 cut(s)	180, 283, 549
BspTNI	GGTCTC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	384
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	191, 454
BssMI	GATC	4 cut(s)	172, 240, 275, 541
BssSI	CACGAG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	132
Bst4CI	ACNGT	4 cut(s)	152, 267, 361, 455
Bst6I	CTCTTC	1 cut(s)	399
BstAUI	TGTACA	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	7 cut(s)	93, 206, 226, 312, 396, 514, 521
BstDSI	CCRYGG	2 cut(s)	191, 454
BstFNI	CGCG	1 cut(s)	414
BstKTI	GATC	4 cut(s)	175, 243, 278, 544
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	4 cut(s)	172, 240, 275, 541
BstNSI	RCATGY	1 cut(s)	470
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	501
BstV2I	GAAGAC	1 cut(s)	409
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
Bsu36I	CCTNAGG	2 cut(s)	226, 396
BsuRI	GGCC	1 cut(s)	143
BtgI	CCRYGG	2 cut(s)	191, 454
BtrI	CACGTC	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	468
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	4 cut(s)	141, 152, 431, 473
CseI	GACGC	2 cut(s)	170, 403
Csp6I	GTAC	2 cut(s)	385, 459
CspCI	CAANNNNNGTGG	2 cut(s)	519, 554
CviAII	CATG	4 cut(s)	462, 467, 499, 554
CviJI	RGCY	9 cut(s)	86, 128, 143, 196, 211, 311, 316, 492, 582
CviKI_1	RGCY	9 cut(s)	86, 128, 143, 196, 211, 311, 316, 492, 582
CviQI	GTAC	2 cut(s)	385, 459
DdeI	CTNAG	7 cut(s)	93, 206, 226, 312, 396, 514, 521
DpnI	GATC	4 cut(s)	174, 242, 277, 543
DpnII	GATC	4 cut(s)	172, 240, 275, 541
DriI	GACNNNNNGTC	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	399
Eam1105I	GACNNNNNGTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	89
Eco47I	GGWCC	3 cut(s)	152, 431, 473
Eco57I	CTGAAG	1 cut(s)	403
Eco81I	CCTNAGG	2 cut(s)	226, 396
Eco88I	CYCGRG	1 cut(s)	427
FaeI	CATG	4 cut(s)	465, 470, 502, 557
FaiI	YATR	9 cut(s)	111, 201, 203, 300, 302, 463, 468, 500, 555
FaqI	GGGAC	2 cut(s)	138, 444
FatI	CATG	4 cut(s)	461, 466, 498, 553
Fnu4HI	GCNGC	1 cut(s)	490
Fsp4HI	GCNGC	1 cut(s)	490
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	1 cut(s)	490
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	2 cut(s)	56, 144
HgaI	GACGC	2 cut(s)	170, 403
Hin1II	CATG	4 cut(s)	465, 470, 502, 557
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	4 cut(s)	67, 186, 409, 576
HpaII	CCGG	2 cut(s)	56, 144
HphI	GGTGA	2 cut(s)	271, 299
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	4 cut(s)	134, 238, 429, 562
Hpy8I	GTNNAC	1 cut(s)	39
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	109, 339
HpyCH4III	ACNGT	4 cut(s)	152, 267, 361, 455
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	2 cut(s)	4, 451
HpyF3I	CTNAG	7 cut(s)	93, 206, 226, 312, 396, 514, 521
HpySE526I	ACGT	1 cut(s)	548
Hsp92II	CATG	4 cut(s)	465, 470, 502, 557
Kzo9I	GATC	4 cut(s)	172, 240, 275, 541
LmnI	GCTCC	1 cut(s)	497
LpnPI	CCDG	7 cut(s)	69, 105, 157, 360, 406, 408, 456
Lsp1109I	GCAGC	1 cut(s)	501
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	1 cut(s)	548
MaeIII	GTNAC	4 cut(s)	146, 259, 377, 549
MalI	GATC	4 cut(s)	174, 242, 277, 543
MboI	GATC	4 cut(s)	172, 240, 275, 541
MboII	GAAGA	4 cut(s)	341, 409, 416, 577
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	585
MnlI	CCTC	3 cut(s)	139, 278, 391
MroXI	GAANNNNTTC	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	533
MspI	CCGG	2 cut(s)	56, 144
MunI	CAATTG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	414
NdeII	GATC	4 cut(s)	172, 240, 275, 541
NlaIII	CATG	4 cut(s)	465, 470, 502, 557
NlaIV	GGNNCC	4 cut(s)	142, 154, 432, 475
NmuCI	GTSAC	3 cut(s)	259, 377, 549
NspI	RCATGY	1 cut(s)	470
OliI	CACNNNNGTG	1 cut(s)	533
PaeI	GCATGC	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	3 cut(s)	67, 186, 409
PkrI	GCNGC	1 cut(s)	491
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
PspN4I	GGNNCC	4 cut(s)	142, 154, 432, 475
PspPI	GGNCC	4 cut(s)	141, 152, 431, 473
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	2 cut(s)	386, 460
RsaNI	GTAC	2 cut(s)	385, 459
RseI	CAYNNNNRTG	1 cut(s)	533
SatI	GCNGC	1 cut(s)	490
Sau3AI	GATC	4 cut(s)	172, 240, 275, 541
Sau96I	GGNCC	4 cut(s)	141, 152, 431, 473
SchI	GAGTC	1 cut(s)	585
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	3 cut(s)	152, 431, 473
SmiMI	CAYNNNNRTG	1 cut(s)	533
SphI	GCATGC	1 cut(s)	470
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	586
SspMI	CTAG	1 cut(s)	272
TaaI	ACNGT	4 cut(s)	152, 267, 361, 455
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	2 cut(s)	81, 123
TasI	AATT	1 cut(s)	167
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	3 cut(s)	67, 186, 409
TscAI	CASTG	1 cut(s)	272
TseFI	GTSAC	3 cut(s)	259, 377, 549
TseI	GCWGC	1 cut(s)	489
Tsp45I	GTSAC	3 cut(s)	259, 377, 549
TspDTI	ATGAA	1 cut(s)	6
TspRI	CASTG	1 cut(s)	272
VpaK11BI	GGWCC	3 cut(s)	152, 431, 473
XceI	RCATGY	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.