Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008411

Physical Location & Seq

Genomic Coordinates Forward (+)

24781642 .. 24783299

Gene Structure 1658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G218200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCAATCTCTGAGGAGTCAAAGTGGGTGAAGCTGAAGCCCATCGAAGCAACAGTGGAGAGCTTTGAAGAGTACGGTCAGGTGGTGGAGGCCTCTCCAGATGGTGAGGAGTTTGGGGCTCGTGATGCTCAGTTGGACCTCAGCCATGGAGTTCCAAGGTTCTACATTATGCATCTTGAAGATAGGCCGCTCAAGTTTTCCAAAATCACACACCATGCGAGCGTGACTCAATGCCTCGGGTCGGTTGGTGGCCATGTTTGGTATCTGGGAGTGGCTAAGCCTACCATTGTAGACAAACAGACACTTGAGAGCAAGGATCGTGAAGGCAAGAATGTGGCGCAGTCTCGCTGTGCCACCGGCCATTTCTATGTGCCTCCGGCGGTGGCGAATGTTCGTGTTTTCAAGATTACAGGTCCCAAGTTTCTGAAGCTTAACCATGGGACATGGCATGCGGGGCCTTTGTTCAGGGCAGACACTATGGATTTTTTCAATCTGGAGCTCAGCAACACCAATGTGGTTGATCACACATCGCATGACTTTGTGAAGGCAAATGGAGTGGAGTTCTTGATCGATGAGCAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

21.69

Weight (kDa)

5.91

Isoelectric Point (pI)

23.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35810 AT2G35810 AT2G35820 AT2G35820 AT2G35830 AT2G35830
fragaria_vesca	FvH4_7g20150
malus_domestica	MD07G1179100.v1.1
prunus_persica	Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0364101
rosa_laevigata	RLG00000027516
rosa_multiflora	Rmu_sc0000071.1_g000020 Rmu_sc0011704.1_g000002 Rmu_sc0038795.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292640
rosa_rugosa	Rorug01G0313600
rosa_samantha	Rh1AG321000 Rh1BG284200 Rh1CG300600 Rh1DG315600
rosa_wichuraiana	Rw1G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	291
AciI	CCGC	3 cut(s)	188, 380, 452
AclWI	GGATC	1 cut(s)	324
AcoI	YGGCCR	2 cut(s)	250, 358
AcuI	CTGAAG	2 cut(s)	56, 446
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	4 cut(s)	68, 179, 403, 490
AleI	CACNNNNGTG	1 cut(s)	512
AluBI	AGCT	4 cut(s)	34, 63, 430, 499
AluI	AGCT	4 cut(s)	34, 63, 430, 499
Alw21I	GWGCWC	1 cut(s)	501
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	1 cut(s)	324
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	5 cut(s)	90, 185, 250, 358, 455
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	3 cut(s)	136, 413, 455
AsuHPI	GGTGA	2 cut(s)	40, 116
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	2 cut(s)	136, 413
BalI	TGGCCA	1 cut(s)	252
BanII	GRGCYC	2 cut(s)	121, 501
BauI	CACGAG	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	501
BbvCI	CCTCAGC	1 cut(s)	140
BccI	CCATC	2 cut(s)	50, 95
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	348
BisI	GCNGC	1 cut(s)	188
BlpI	GCTNAGC	2 cut(s)	276, 500
BlsI	GCNGC	1 cut(s)	189
Bme18I	GGWCC	2 cut(s)	136, 413
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	3 cut(s)	136, 413, 455
BmiI	GGNNCC	2 cut(s)	415, 456
BmsI	GCATC	2 cut(s)	115, 181
BplI	GAGNNNNNCTC	2 cut(s)	211, 243
BpmI	CTGGAG	2 cut(s)	81, 515
Bpu10I	CCTNAGC	1 cut(s)	140
Bpu1102I	GCTNAGC	2 cut(s)	276, 500
BpuEI	CTTGAG	2 cut(s)	176, 326
Bsa29I	ATCGAT	1 cut(s)	570
BsaJI	CCNNGG	4 cut(s)	145, 155, 235, 436
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse118I	RCCGGY	1 cut(s)	356
BseCI	ATCGAT	1 cut(s)	570
BseDI	CCNNGG	4 cut(s)	145, 155, 235, 436
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	3 cut(s)	143, 154, 514
BseRI	GAGGAG	2 cut(s)	29, 122
BshFI	GGCC	5 cut(s)	92, 187, 252, 360, 457
BshVI	ATCGAT	1 cut(s)	570
BsiHKAI	GWGCWC	1 cut(s)	501
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	357, 377
BslFI	GGGAC	2 cut(s)	399, 454
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	2 cut(s)	399, 454
BsnI	GGCC	5 cut(s)	92, 187, 252, 360, 457
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	121, 501
Bsp143I	GATC	3 cut(s)	316, 520, 567
Bsp1720I	GCTNAGC	2 cut(s)	276, 500
Bsp19I	CCATGG	2 cut(s)	145, 436
BspACI	CCGC	3 cut(s)	188, 380, 452
BspANI	GGCC	5 cut(s)	92, 187, 252, 360, 457
BspCNI	CTCAG	4 cut(s)	4, 142, 153, 513
BspDI	ATCGAT	1 cut(s)	570
BspLI	GGNNCC	2 cut(s)	415, 456
BspPI	GGATC	1 cut(s)	324
BsrBI	CCGCTC	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	4 cut(s)	145, 155, 235, 436
BssMI	GATC	3 cut(s)	316, 520, 567
BssSI	CACGAG	1 cut(s)	120
BssT1I	CCWWGG	3 cut(s)	145, 155, 436
Bst2BI	CACGAG	1 cut(s)	120
Bst4CI	ACNGT	3 cut(s)	55, 77, 582
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	220, 450
BstDEI	CTNAG	5 cut(s)	12, 129, 140, 276, 500
BstDSI	CCRYGG	2 cut(s)	145, 436
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	3 cut(s)	319, 523, 570
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	3 cut(s)	316, 520, 567
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 454
BstNSI	RCATGY	1 cut(s)	452
Bsu15I	ATCGAT	1 cut(s)	570
BsuRI	GGCC	5 cut(s)	92, 187, 252, 360, 457
BsuTUI	ATCGAT	1 cut(s)	570
BtgI	CCRYGG	2 cut(s)	145, 436
BtgZI	GCGATG	1 cut(s)	513
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	220, 450
CfoI	GCGC	1 cut(s)	340
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	3 cut(s)	136, 413, 455
ClaI	ATCGAT	1 cut(s)	570
Csp6I	GTAC	1 cut(s)	73
CspCI	CAANNNNNGTGG	2 cut(s)	537, 572
CviAII	CATG	7 cut(s)	146, 215, 254, 437, 444, 449, 533
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	5 cut(s)	12, 129, 140, 276, 500
DpnI	GATC	3 cut(s)	318, 522, 569
DpnII	GATC	3 cut(s)	316, 520, 567
EaeI	YGGCCR	2 cut(s)	250, 358
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	499
Eco130I	CCWWGG	3 cut(s)	145, 155, 436
Eco147I	AGGCCT	1 cut(s)	92
Eco24I	GRGCYC	2 cut(s)	121, 501
Eco47I	GGWCC	2 cut(s)	136, 413
Eco53kI	GAGCTC	1 cut(s)	499
Eco57I	CTGAAG	2 cut(s)	56, 446
Eco88I	CYCGRG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	499
EcoO109I	RGGNCCY	2 cut(s)	413, 455
EcoT14I	CCWWGG	3 cut(s)	145, 155, 436
EcoT22I	ATGCAT	1 cut(s)	174
EcoT38I	GRGCYC	2 cut(s)	121, 501
ErhI	CCWWGG	3 cut(s)	145, 155, 436
FaeI	CATG	7 cut(s)	149, 218, 257, 440, 447, 452, 536
FaqI	GGGAC	2 cut(s)	399, 454
FatI	CATG	7 cut(s)	145, 214, 253, 436, 443, 448, 532
FauI	CCCGC	1 cut(s)	445
FbaI	TGATCA	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	188
FriOI	GRGCYC	2 cut(s)	121, 501
Fsp4HI	GCNGC	1 cut(s)	188
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	188
GsuI	CTGGAG	2 cut(s)	81, 515
HaeIII	GGCC	5 cut(s)	92, 187, 252, 360, 457
HapII	CCGG	2 cut(s)	357, 377
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	7 cut(s)	149, 218, 257, 440, 447, 452, 536
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	2 cut(s)	17, 226
HpaII	CCGG	2 cut(s)	357, 377
HphI	GGTGA	2 cut(s)	40, 116
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	13, 426
Hpy188III	TCNNGA	7 cut(s)	98, 122, 176, 320, 403, 494, 565
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	2 cut(s)	317, 538
HpyCH4III	ACNGT	3 cut(s)	55, 77, 582
HpyCH4V	TGCA	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 454
HpyF3I	CTNAG	5 cut(s)	12, 129, 140, 276, 500
Hsp92II	CATG	7 cut(s)	149, 218, 257, 440, 447, 452, 536
HspAI	GCGC	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	3 cut(s)	316, 520, 567
LmnI	GCTCC	1 cut(s)	496
LpnPI	CCDG	8 cut(s)	65, 111, 251, 370, 390, 396, 451, 479
LweI	GCATC	2 cut(s)	115, 181
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	318, 522, 569
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	3 cut(s)	316, 520, 567
MboII	GAAGA	2 cut(s)	80, 191
MhlI	GDGCHC	2 cut(s)	121, 501
MlsI	TGGCCA	1 cut(s)	252
MluNI	TGGCCA	1 cut(s)	252
MlyI	GAGTC	2 cut(s)	26, 220
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	7 cut(s)	7, 82, 100, 103, 149, 245, 384
Mox20I	TGGCCA	1 cut(s)	252
Mph1103I	ATGCAT	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	2 cut(s)	366, 512
Msp20I	TGGCCA	1 cut(s)	252
MspI	CCGG	2 cut(s)	357, 377
MwoI	GCNNNNNNNGC	2 cut(s)	125, 454
NcoI	CCATGG	2 cut(s)	145, 436
NdeII	GATC	3 cut(s)	316, 520, 567
NlaIII	CATG	7 cut(s)	149, 218, 257, 440, 447, 452, 536
NlaIV	GGNNCC	2 cut(s)	415, 456
NmuCI	GTSAC	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	174
NspI	RCATGY	1 cut(s)	452
OliI	CACNNNNGTG	1 cut(s)	512
PaeI	GCATGC	1 cut(s)	452
PceI	AGGCCT	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	2 cut(s)	25, 220
PpsI	GAGTC	2 cut(s)	25, 220
PpuMI	RGGWCCY	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	501
Psp5II	RGGWCCY	1 cut(s)	413
PspN4I	GGNNCC	2 cut(s)	415, 456
PspPI	GGNCC	3 cut(s)	136, 413, 455
PspPPI	RGGWCCY	1 cut(s)	413
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
RseI	CAYNNNNRTG	2 cut(s)	366, 512
SacI	GAGCTC	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	3 cut(s)	316, 520, 567
Sau96I	GGNCC	3 cut(s)	136, 413, 455
SchI	GAGTC	2 cut(s)	26, 220
SduI	GDGCHC	2 cut(s)	121, 501
SetI	ASST	8 cut(s)	36, 65, 84, 141, 161, 415, 432, 501
SfaNI	GCATC	2 cut(s)	115, 181
SinI	GGWCC	2 cut(s)	136, 413
SmiMI	CAYNNNNRTG	2 cut(s)	366, 512
SmlI	CTYRAG	2 cut(s)	191, 305
SmoI	CTYRAG	2 cut(s)	191, 305
SphI	GCATGC	1 cut(s)	452
SseBI	AGGCCT	1 cut(s)	92
SsiI	CCGC	3 cut(s)	188, 380, 452
SstI	GAGCTC	1 cut(s)	501
StuI	AGGCCT	1 cut(s)	92
StyI	CCWWGG	3 cut(s)	145, 155, 436
TaaI	ACNGT	3 cut(s)	55, 77, 582
TaqI	TCGA	2 cut(s)	45, 570
TauI	GCSGC	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	1 cut(s)	60
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspRI	CASTG	1 cut(s)	60
VpaK11BI	GGWCC	2 cut(s)	136, 413
XceI	RCATGY	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.