Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008411

Physical Location & Seq

Genomic Coordinates Forward (+)

25875095 .. 25882462

Gene Structure 7368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1179100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAAATCTCCGGCGAGTCTAAGTGGGTGAAGCTGAAGGCCGTCGAAGCCACTCCGGAGAGCTTTGGAGAGTACGGCCAGGTGGTGGAGGCTTCGCCGGACGGCGACGTGTTTGGTCCTAGCGATGCTCAGTTGGACCTCAGCCATGGAGTTCCAAGGTTCTACATAATGAATCTTCAAGGTAGGCCGCTCAAGTTCTCAACGATCACACACCATGCGAGCGTGACGCAGTGCCTCGGTTCAATCGGCGGCCACGTTTGGTATCTTGGAGTGGCCAAGCCTTCCATTGTTGAAAGCAAGGACCGTGAAGGCAACAATGTGGTGCAGTCTCATTGTGCCTCCGGCCATTTCTACGTGCCACCGGCTGTGGCAGACGTTCGGGTTTTCAAGATTACGGGTCCCAAGTTCCTGAAGCTTAATGTCGGGACGTGGCATGCGGGGCCTTTGTTCATGGCAGGGACTATGGACTTCTACAATCTGGAGCTGAGCGATACCAATGTGGTTGATCACACGACACATGACTTTCTGAAGGAGAATGGAGTGAAGTTCTTGATCGACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

20.51

Weight (kDa)

5.67

Isoelectric Point (pI)

18.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35810 AT2G35810 AT2G35820 AT2G35820 AT2G35830 AT2G35830
fragaria_vesca	FvH4_7g20150
malus_domestica	MD07G1179100.v1.1
prunus_persica	Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0364101
rosa_laevigata	RLG00000027516
rosa_multiflora	Rmu_sc0000071.1_g000020 Rmu_sc0011704.1_g000002 Rmu_sc0038795.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292640
rosa_rugosa	Rorug01G0313600
rosa_samantha	Rh1AG321000 Rh1BG284200 Rh1CG300600 Rh1DG315600
rosa_wichuraiana	Rw1G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccBSI	CCGCTC	1 cut(s)	190
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	3 cut(s)	188, 249, 437
AcoI	YGGCCR	4 cut(s)	76, 250, 273, 343
AcuI	CTGAAG	3 cut(s)	56, 431, 548
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	4 cut(s)	179, 243, 293, 388
AjiI	CACGTC	2 cut(s)	109, 429
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	4 cut(s)	34, 63, 415, 484
AluI	AGCT	4 cut(s)	34, 63, 415, 484
Alw26I	GTCTC	1 cut(s)	333
Aor13HI	TCCGGA	1 cut(s)	55
AoxI	GGCC	7 cut(s)	39, 76, 185, 250, 273, 343, 440
AspS9I	GGNCC	5 cut(s)	116, 136, 301, 398, 440
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	4 cut(s)	116, 136, 301, 398
BaeI	ACNNNNGTAYC	2 cut(s)	483, 516
BalI	TGGCCA	1 cut(s)	275
BbvCI	CCTCAGC	1 cut(s)	140
BceAI	ACGGC	3 cut(s)	26, 91, 118
BciT130I	CCWGG	1 cut(s)	80
BclI	TGATCA	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	1 cut(s)	120
BisI	GCNGC	2 cut(s)	188, 250
BlpI	GCTNAGC	1 cut(s)	485
BlsI	GCNGC	2 cut(s)	189, 251
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	4 cut(s)	116, 136, 301, 398
BmgBI	CACGTC	2 cut(s)	109, 429
BmgT120I	GGNCC	5 cut(s)	116, 136, 301, 398, 440
BmiI	GGNNCC	3 cut(s)	399, 400, 441
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	500
Bpu10I	CCTNAGC	1 cut(s)	140
Bpu1102I	GCTNAGC	1 cut(s)	485
BpuEI	CTTGAG	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	355
BsaJI	CCNNGG	3 cut(s)	145, 155, 235
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse118I	RCCGGY	1 cut(s)	361
BseAI	TCCGGA	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	3 cut(s)	145, 155, 235
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	3 cut(s)	143, 154, 476
BsgI	GTGCAG	1 cut(s)	344
BshFI	GGCC	7 cut(s)	41, 78, 187, 252, 275, 345, 442
BsiSI	CCGG	5 cut(s)	12, 56, 98, 342, 362
BslFI	GGGAC	3 cut(s)	384, 439, 472
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	333
BsmFI	GGGAC	3 cut(s)	384, 439, 472
BsnI	GGCC	7 cut(s)	41, 78, 187, 252, 275, 345, 442
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	3 cut(s)	204, 505, 552
Bsp1720I	GCTNAGC	1 cut(s)	485
Bsp19I	CCATGG	1 cut(s)	145
BspACI	CCGC	3 cut(s)	188, 249, 437
BspANI	GGCC	7 cut(s)	41, 78, 187, 252, 275, 345, 442
BspCNI	CTCAG	3 cut(s)	142, 153, 477
BspEI	TCCGGA	1 cut(s)	55
BspLI	GGNNCC	3 cut(s)	399, 400, 441
BsrBI	CCGCTC	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	361
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	3 cut(s)	145, 155, 235
BssMI	GATC	3 cut(s)	204, 505, 552
BssT1I	CCWWGG	2 cut(s)	145, 155
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	355
BstC8I	GCNNGC	2 cut(s)	220, 435
BstDEI	CTNAG	4 cut(s)	21, 129, 140, 485
BstDSI	CCRYGG	1 cut(s)	145
BstKTI	GATC	3 cut(s)	207, 508, 555
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	3 cut(s)	204, 505, 552
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 439
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	78
BsuRI	GGCC	7 cut(s)	41, 78, 187, 252, 275, 345, 442
BtgI	CCRYGG	1 cut(s)	145
BtgZI	GCGATG	1 cut(s)	138
BtrI	CACGTC	2 cut(s)	109, 429
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	236
Cac8I	GCNNGC	2 cut(s)	220, 435
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	5 cut(s)	116, 136, 301, 398, 440
CseI	GACGC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	5 cut(s)	146, 215, 434, 451, 518
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	4 cut(s)	21, 129, 140, 485
DpnI	GATC	3 cut(s)	206, 507, 554
DpnII	GATC	3 cut(s)	204, 505, 552
EaeI	YGGCCR	4 cut(s)	76, 250, 273, 343
Eco130I	CCWWGG	2 cut(s)	145, 155
Eco47I	GGWCC	4 cut(s)	116, 136, 301, 398
Eco57I	CTGAAG	3 cut(s)	56, 431, 548
EcoO109I	RGGNCCY	2 cut(s)	398, 440
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	2 cut(s)	145, 155
ErhI	CCWWGG	2 cut(s)	145, 155
FaeI	CATG	5 cut(s)	149, 218, 437, 454, 521
FaiI	YATR	7 cut(s)	147, 167, 216, 435, 452, 464, 519
FaqI	GGGAC	3 cut(s)	384, 439, 472
FatI	CATG	5 cut(s)	145, 214, 433, 450, 517
FauI	CCCGC	1 cut(s)	430
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	188, 250
Fsp4HI	GCNGC	2 cut(s)	188, 250
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	2 cut(s)	188, 250
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	7 cut(s)	41, 78, 187, 252, 275, 345, 442
HapII	CCGG	5 cut(s)	12, 56, 98, 342, 362
HgaI	GACGC	1 cut(s)	235
Hin1II	CATG	5 cut(s)	149, 218, 437, 454, 521
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	2 cut(s)	17, 172
HpaII	CCGG	5 cut(s)	12, 56, 98, 342, 362
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	528
Hpy188III	TCNNGA	6 cut(s)	56, 388, 409, 424, 479, 550
Hpy99I	CGWCG	3 cut(s)	47, 110, 560
HpyAV	CCTTC	4 cut(s)	31, 291, 302, 523
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	5 cut(s)	108, 255, 354, 375, 428
HpyCH4V	TGCA	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 439
HpyF3I	CTNAG	4 cut(s)	21, 129, 140, 485
HpySE526I	ACGT	5 cut(s)	108, 255, 354, 375, 428
Hsp92II	CATG	5 cut(s)	149, 218, 437, 454, 521
KflI	GGGWCCC	1 cut(s)	398
Kpn2I	TCCGGA	1 cut(s)	55
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	204, 505, 552
LmnI	GCTCC	1 cut(s)	481
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	5 cut(s)	108, 255, 354, 375, 428
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	206, 507, 554
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	3 cut(s)	204, 505, 552
MboII	GAAGA	1 cut(s)	167
MlsI	TGGCCA	1 cut(s)	275
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	4 cut(s)	82, 149, 245, 349
Mox20I	TGGCCA	1 cut(s)	275
MroI	TCCGGA	1 cut(s)	55
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	1 cut(s)	417
Msp20I	TGGCCA	1 cut(s)	275
MspI	CCGG	5 cut(s)	12, 56, 98, 342, 362
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	47, 439
NcoI	CCATGG	1 cut(s)	145
NdeII	GATC	3 cut(s)	204, 505, 552
NlaIII	CATG	5 cut(s)	149, 218, 437, 454, 521
NlaIV	GGNNCC	3 cut(s)	399, 400, 441
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	172
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	189, 251
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Ppu21I	YACGTR	1 cut(s)	355
PpuMI	RGGWCCY	1 cut(s)	398
Psp5II	RGGWCCY	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	399, 400, 441
PspPI	GGNCC	5 cut(s)	116, 136, 301, 398, 440
PspPPI	RGGWCCY	1 cut(s)	398
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	2 cut(s)	188, 250
Sau3AI	GATC	3 cut(s)	204, 505, 552
Sau96I	GGNCC	5 cut(s)	116, 136, 301, 398, 440
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	80
SfaNI	GCATC	1 cut(s)	115
SinI	GGWCC	4 cut(s)	116, 136, 301, 398
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SphI	GCATGC	1 cut(s)	437
SsiI	CCGC	3 cut(s)	188, 249, 437
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	2 cut(s)	145, 155
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	5 cut(s)	111, 258, 357, 378, 431
TaqI	TCGA	2 cut(s)	45, 555
TauI	GCSGC	2 cut(s)	190, 252
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	236
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	185, 439
TspRI	CASTG	1 cut(s)	236
Van91I	CCANNNNNTGG	1 cut(s)	85
VpaK11BI	GGWCC	4 cut(s)	116, 136, 301, 398
XceI	RCATGY	1 cut(s)	437
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.