Rh1BG284200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0008411
Physical Location & Seq
Forward (+)
42060471 .. 42061292
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG284200.1

Sequence Viewer

Length: 495 bp
ATGGAAATTTCCGGCGAGGAGTTGAGGACTGTGAAGCTGAAGCCGATTGAAGCGACGCCGGAGACGTTTGGGGAGTACGGTCAGGTTGTGGAGGCCTCGCCGGACGGCGACGAGTTTGGTCCTCGTGATGCTCAGCTAGACCTTAGCCGTGGAGTTCCCAGGTTCTACATTATGCACCTTGAAAATCGACCGCTGAAGTTTACCAACATTACTCACCACGCCAGCGTCACGCAGTGTCTTGGGGCCATTGGCGGTCATGTTTGGTATCTCGGAGTTGCTAAGCCTTCCATTGTGGAAGAGAAGGGCAACAATGTGGTGAAGTCTCGTTGTGCTTCTGGTCATTACTATGTGCCTCCTTCTGTCGAGGATGTTCGTGTTTTCAAGATTACAGGTCCCAAATTTCTCAAGCTTAACCGGGGGACATGGCATGCAGGGCCGCTGTTCAGGGGAGCTAGCATGGACTTTTACAATTTGGAGCTCAGCAATACCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.25

Weight (kDa)

6.59

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 191, 252, 437
AcsI RAATTY 2 cut(s) 6, 398
AcuI CTGAAG 2 cut(s) 59, 215
AcyI GRCGYC 1 cut(s) 56
AdeI CACNNNGTG 1 cut(s) 234
AfaI GTAC 1 cut(s) 77
AgsI TTSAA 3 cut(s) 50, 182, 382
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 5 cut(s) 37, 136, 409, 452, 478
AluI AGCT 5 cut(s) 37, 136, 409, 452, 478
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 2 cut(s) 56, 327
AoxI GGCC 3 cut(s) 93, 243, 434
ApoI RAATTY 2 cut(s) 6, 398
AspS9I GGNCC 4 cut(s) 119, 243, 392, 434
AsuC2I CCSGG 1 cut(s) 416
AsuHPI GGTGA 2 cut(s) 206, 328
AsuNHI GCTAGC 1 cut(s) 452
AvaII GGWCC 2 cut(s) 119, 392
BanII GRGCYC 1 cut(s) 480
BauI CACGAG 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 480
BceAI ACGGC 2 cut(s) 121, 132
BciT130I CCWGG 1 cut(s) 160
BcnI CCSGG 1 cut(s) 416
BcoDI GTCTC 2 cut(s) 56, 327
BfaI CTAG 2 cut(s) 137, 453
BisI GCNGC 1 cut(s) 437
BlpI GCTNAGC 3 cut(s) 132, 279, 479
BlsI GCNGC 1 cut(s) 438
Bme1390I CCNGG 2 cut(s) 160, 416
Bme18I GGWCC 2 cut(s) 119, 392
BmgT120I GGNCC 4 cut(s) 119, 243, 392, 434
BmiI GGNNCC 2 cut(s) 244, 394
BmrFI CCNGG 2 cut(s) 160, 416
BmsI GCATC 1 cut(s) 118
BmtI GCTAGC 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 143
Bpu1102I GCTNAGC 3 cut(s) 132, 279, 479
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 416
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 3 cut(s) 148, 158, 415
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 3 cut(s) 148, 158, 415
BseGI GGATG 1 cut(s) 373
BseMII CTCAG 2 cut(s) 146, 493
BseRI GAGGAG 1 cut(s) 32
Bsh1285I CGRYCG 1 cut(s) 191
BshFI GGCC 3 cut(s) 95, 245, 436
BsiEI CGRYCG 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 480
BsiSI CCGG 4 cut(s) 12, 59, 101, 415
BslFI GGGAC 2 cut(s) 378, 433
BsmAI GTCTC 2 cut(s) 56, 327
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 2 cut(s) 378, 433
BsnI GGCC 3 cut(s) 95, 245, 436
Bsp1286I GDGCHC 1 cut(s) 480
Bsp1720I GCTNAGC 3 cut(s) 132, 279, 479
BspACI CCGC 3 cut(s) 191, 252, 437
BspANI GGCC 3 cut(s) 95, 245, 436
BspCNI CTCAG 2 cut(s) 145, 492
BspLI GGNNCC 2 cut(s) 244, 394
BspOI GCTAGC 1 cut(s) 456
BssECI CCNNGG 3 cut(s) 148, 158, 415
BssNI GRCGYC 1 cut(s) 56
BssSI CACGAG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 2 cut(s) 31, 80
Bst6I CTCTTC 1 cut(s) 291
BstACI GRCGYC 1 cut(s) 56
BstC8I GCNNGC 3 cut(s) 223, 429, 454
BstDEI CTNAG 4 cut(s) 132, 143, 279, 479
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 1 cut(s) 373
BstMAI GTCTC 2 cut(s) 56, 327
BstMCI CGRYCG 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 433
BstNI CCWGG 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 2 cut(s) 158, 414
BsuRI GGCC 3 cut(s) 95, 245, 436
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 3 cut(s) 223, 429, 454
Cfr13I GGNCC 4 cut(s) 119, 243, 392, 434
CseI GACGC 2 cut(s) 64, 214
Csp6I GTAC 1 cut(s) 76
CviAII CATG 4 cut(s) 257, 423, 428, 457
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 4 cut(s) 132, 143, 279, 479
DraIII CACNNNGTG 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 478
Eco147I AGGCCT 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 480
Eco47I GGWCC 2 cut(s) 119, 392
Eco53kI GAGCTC 1 cut(s) 478
Eco57I CTGAAG 2 cut(s) 59, 215
EcoICRI GAGCTC 1 cut(s) 478
EcoO109I RGGNCCY 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 480
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 4 cut(s) 260, 426, 431, 460
FaiI YATR 6 cut(s) 173, 258, 348, 424, 429, 458
FaqI GGGAC 2 cut(s) 378, 433
FatI CATG 4 cut(s) 256, 422, 427, 456
Fnu4HI GCNGC 1 cut(s) 437
FokI GGATG 1 cut(s) 380
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 1 cut(s) 437
FspBI CTAG 2 cut(s) 137, 453
GluI GCNGC 1 cut(s) 437
HaeIII GGCC 3 cut(s) 95, 245, 436
HapII CCGG 4 cut(s) 12, 59, 101, 415
HgaI GACGC 2 cut(s) 64, 214
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 4 cut(s) 260, 426, 431, 460
HindIII AAGCTT 1 cut(s) 407
HpaII CCGG 4 cut(s) 12, 59, 101, 415
HphI GGTGA 2 cut(s) 206, 328
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 1 cut(s) 272
Hpy188III TCNNGA 2 cut(s) 125, 382
Hpy8I GTNNAC 1 cut(s) 201
Hpy99I CGWCG 2 cut(s) 58, 113
HpyAV CCTTC 3 cut(s) 294, 295, 366
HpyCH4III ACNGT 2 cut(s) 31, 80
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 175, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 433
HpyF3I CTNAG 4 cut(s) 132, 143, 279, 479
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 4 cut(s) 260, 426, 431, 460
LmnI GCTCC 2 cut(s) 449, 475
LweI GCATC 1 cut(s) 118
MaeI CTAG 2 cut(s) 137, 453
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 226
MboII GAAGA 1 cut(s) 308
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 4 cut(s) 6, 398, 469, 490
MnlI CCTC 7 cut(s) 10, 18, 85, 106, 132, 358, 363
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 2 cut(s) 193, 439
MspI CCGG 4 cut(s) 12, 59, 101, 415
MspR9I CCNGG 2 cut(s) 160, 416
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 433
NciI CCSGG 1 cut(s) 416
NheI GCTAGC 1 cut(s) 452
NlaIII CATG 4 cut(s) 260, 426, 431, 460
NlaIV GGNNCC 2 cut(s) 244, 394
NmuCI GTSAC 1 cut(s) 226
NspI RCATGY 1 cut(s) 431
PaeI GCATGC 1 cut(s) 431
PceI AGGCCT 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PkrI GCNGC 1 cut(s) 438
PpuMI RGGWCCY 1 cut(s) 392
Psp124BI GAGCTC 1 cut(s) 480
Psp5II RGGWCCY 1 cut(s) 392
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 2 cut(s) 244, 394
PspPI GGNCC 4 cut(s) 119, 243, 392, 434
PspPPI RGGWCCY 1 cut(s) 392
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 1 cut(s) 437
Sau96I GGNCC 4 cut(s) 119, 243, 392, 434
ScrFI CCNGG 2 cut(s) 160, 416
SduI GDGCHC 1 cut(s) 480
SfaNI GCATC 1 cut(s) 118
SinI GGWCC 2 cut(s) 119, 392
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
SphI GCATGC 1 cut(s) 431
Sse9I AATT 4 cut(s) 6, 398, 469, 490
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 3 cut(s) 191, 252, 437
SspMI CTAG 2 cut(s) 137, 453
SstI GAGCTC 1 cut(s) 480
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 158, 414
TaaI ACNGT 2 cut(s) 31, 80
TaiI ACGT 1 cut(s) 68
TaqI TCGA 2 cut(s) 187, 363
TasI AATT 4 cut(s) 6, 398, 469, 490
TauI GCSGC 1 cut(s) 439
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 1 cut(s) 239
TseFI GTSAC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 226
TspRI CASTG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 119, 392
XapI RAATTY 2 cut(s) 6, 398
XceI RCATGY 1 cut(s) 431
XspI CTAG 2 cut(s) 137, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.