Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008411

Physical Location & Seq

Genomic Coordinates Reverse (-)

12342103 .. 12342958

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027516

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAAATTTCCGGCGAGGAGTTAAAGACTGTGAAGCTGAAGCCAATTGAAGCGACGCCGGAGACGTTTGGGGAGTACGGTCAGGTTGTGGAGGCCTCGCCGGACGGAGATGAGTTTGGTCCTTGTGATGCTCAGCTTGACCTTAGCCGTGGAGTTCCCAGGTTCTACATTATGCACCTTGAAAATCGACCGCTGAAATTTACCAACATTACTCACCACGCCAGCGTGACGCAGTGTCTTGGGGCCATTGGCGGCCATGTTTGGTATCTCGGAGTTGTTAAGCCTTCCATTGTGGAAAAGAAGGGCAACAATGTGGTGAAGTCTCGTTGTGCTTCTGGTCATTACTATGTGCCTCCTCCTGTCGAGGATGTTCGTGTTTTCAAGATTACAGGTCCCAAATTTCTCAAGCTTAACCGGGGGACATGGCATGCAGGGCCTTTGTTCAGGGCAGAGAGCATGGACTACTACAATTTGGAGCTCAGCAATACCAACGTGGTTGATCACACATTACATGACTTCGTGAAGGAAAATGGAGTTGAGTTTCTAATAGACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.73

Weight (kDa)

5.75

Isoelectric Point (pI)

26.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35810 AT2G35810 AT2G35820 AT2G35820 AT2G35830 AT2G35830
fragaria_vesca	FvH4_7g20150
malus_domestica	MD07G1179100.v1.1
prunus_persica	Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0364101
rosa_laevigata	RLG00000027516
rosa_multiflora	Rmu_sc0000071.1_g000020 Rmu_sc0011704.1_g000002 Rmu_sc0038795.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292640
rosa_rugosa	Rorug01G0313600
rosa_samantha	Rh1AG321000 Rh1BG284200 Rh1CG300600 Rh1DG315600
rosa_wichuraiana	Rw1G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	191, 252
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	3 cut(s)	6, 197, 398
AcuI	CTGAAG	1 cut(s)	59
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	50, 182, 382
AhdI	GACNNNNNGTC	1 cut(s)	234
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	4 cut(s)	37, 136, 409, 478
AluI	AGCT	4 cut(s)	37, 136, 409, 478
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	2 cut(s)	56, 327
AoxI	GGCC	4 cut(s)	93, 243, 253, 434
ApoI	RAATTY	3 cut(s)	6, 197, 398
AspS9I	GGNCC	4 cut(s)	119, 243, 392, 434
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	2 cut(s)	206, 328
AvaII	GGWCC	2 cut(s)	119, 392
BanII	GRGCYC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	480
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	160
BclI	TGATCA	1 cut(s)	499
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	2 cut(s)	56, 327
BisI	GCNGC	1 cut(s)	253
BlpI	GCTNAGC	2 cut(s)	132, 479
BlsI	GCNGC	1 cut(s)	254
Bme1390I	CCNGG	2 cut(s)	160, 416
Bme18I	GGWCC	2 cut(s)	119, 392
BmeRI	GACNNNNNGTC	1 cut(s)	234
BmgT120I	GGNCC	4 cut(s)	119, 243, 392, 434
BmiI	GGNNCC	2 cut(s)	244, 394
BmrFI	CCNGG	2 cut(s)	160, 416
BmsI	GCATC	1 cut(s)	118
Bpu10I	CCTNAGC	1 cut(s)	143
Bpu1102I	GCTNAGC	2 cut(s)	132, 479
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	3 cut(s)	148, 158, 415
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	3 cut(s)	148, 158, 415
BseGI	GGATG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	146, 493
BseRI	GAGGAG	2 cut(s)	32, 345
Bsh1285I	CGRYCG	1 cut(s)	191
BshFI	GGCC	4 cut(s)	95, 245, 255, 436
BsiEI	CGRYCG	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	480
BsiSI	CCGG	4 cut(s)	12, 59, 101, 415
BslFI	GGGAC	2 cut(s)	378, 433
BsmAI	GTCTC	2 cut(s)	56, 327
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	2 cut(s)	378, 433
BsnI	GGCC	4 cut(s)	95, 245, 255, 436
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	1 cut(s)	499
Bsp1720I	GCTNAGC	2 cut(s)	132, 479
BspACI	CCGC	2 cut(s)	191, 252
BspANI	GGCC	4 cut(s)	95, 245, 255, 436
BspCNI	CTCAG	2 cut(s)	145, 492
BspLI	GGNNCC	2 cut(s)	244, 394
BssECI	CCNNGG	3 cut(s)	148, 158, 415
BssMI	GATC	1 cut(s)	499
BssNI	GRCGYC	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	2 cut(s)	31, 80
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	223, 429
BstDEI	CTNAG	3 cut(s)	132, 143, 479
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	1 cut(s)	502
BstMAI	GTCTC	2 cut(s)	56, 327
BstMBI	GATC	1 cut(s)	499
BstMCI	CGRYCG	1 cut(s)	191
BstMWI	GCNNNNNNNGC	1 cut(s)	433
BstNI	CCWGG	1 cut(s)	160
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	158, 414
BsuRI	GGCC	4 cut(s)	95, 245, 255, 436
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	1 cut(s)	239
Cac8I	GCNNGC	2 cut(s)	223, 429
Cfr13I	GGNCC	4 cut(s)	119, 243, 392, 434
CseI	GACGC	2 cut(s)	64, 238
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	5 cut(s)	257, 423, 428, 457, 512
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	3 cut(s)	132, 143, 479
DpnI	GATC	1 cut(s)	501
DpnII	GATC	1 cut(s)	499
DriI	GACNNNNNGTC	1 cut(s)	234
EaeI	YGGCCR	1 cut(s)	253
Eam1105I	GACNNNNNGTC	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	478
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	480
Eco47I	GGWCC	2 cut(s)	119, 392
Eco53kI	GAGCTC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	478
EcoO109I	RGGNCCY	2 cut(s)	392, 434
EcoRII	CCWGG	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	480
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	5 cut(s)	260, 426, 431, 460, 515
FaiI	YATR	7 cut(s)	173, 258, 348, 424, 429, 458, 513
FaqI	GGGAC	2 cut(s)	378, 433
FatI	CATG	5 cut(s)	256, 422, 427, 456, 511
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	1 cut(s)	253
GluI	GCNGC	1 cut(s)	253
HaeIII	GGCC	4 cut(s)	95, 245, 255, 436
HapII	CCGG	4 cut(s)	12, 59, 101, 415
HgaI	GACGC	2 cut(s)	64, 238
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	5 cut(s)	260, 426, 431, 460, 515
HindIII	AAGCTT	1 cut(s)	407
HpaII	CCGG	4 cut(s)	12, 59, 101, 415
HphI	GGTGA	2 cut(s)	206, 328
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	2 cut(s)	382, 520
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	3 cut(s)	294, 295, 517
HpyCH4III	ACNGT	2 cut(s)	31, 80
HpyCH4IV	ACGT	2 cut(s)	65, 492
HpyCH4V	TGCA	2 cut(s)	175, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	433
HpyF3I	CTNAG	3 cut(s)	132, 143, 479
HpySE526I	ACGT	2 cut(s)	65, 492
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	5 cut(s)	260, 426, 431, 460, 515
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	1 cut(s)	499
LmnI	GCTCC	1 cut(s)	475
LweI	GCATC	1 cut(s)	118
MaeII	ACGT	2 cut(s)	65, 492
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	1 cut(s)	501
MboI	GATC	1 cut(s)	499
MfeI	CAATTG	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	480
MluCI	AATT	5 cut(s)	6, 45, 197, 398, 469
MnlI	CCTC	6 cut(s)	10, 85, 106, 358, 363, 366
MseI	TTAA	3 cut(s)	23, 279, 411
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	4 cut(s)	12, 59, 101, 415
MspR9I	CCNGG	2 cut(s)	160, 416
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	1 cut(s)	433
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	1 cut(s)	499
NlaIII	CATG	5 cut(s)	260, 426, 431, 460, 515
NlaIV	GGNNCC	2 cut(s)	244, 394
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	431
PaeI	GCATGC	1 cut(s)	431
PceI	AGGCCT	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	244, 394
PspPI	GGNCC	4 cut(s)	119, 243, 392, 434
PspPPI	RGGWCCY	1 cut(s)	392
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	480
SaqAI	TTAA	3 cut(s)	23, 279, 411
SatI	GCNGC	1 cut(s)	253
Sau3AI	GATC	1 cut(s)	499
Sau96I	GGNCC	4 cut(s)	119, 243, 392, 434
ScrFI	CCNGG	2 cut(s)	160, 416
SduI	GDGCHC	1 cut(s)	480
SfaNI	GCATC	1 cut(s)	118
SinI	GGWCC	2 cut(s)	119, 392
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	5 cut(s)	6, 45, 197, 398, 469
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	2 cut(s)	191, 252
SstI	GAGCTC	1 cut(s)	480
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	158, 414
TaaI	ACNGT	2 cut(s)	31, 80
TaiI	ACGT	2 cut(s)	68, 495
TaqI	TCGA	2 cut(s)	187, 363
TasI	AATT	5 cut(s)	6, 45, 197, 398, 469
TauI	GCSGC	1 cut(s)	255
Tru1I	TTAA	3 cut(s)	23, 279, 411
Tru9I	TTAA	3 cut(s)	23, 279, 411
TscAI	CASTG	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	119, 392
XapI	RAATTY	3 cut(s)	6, 197, 398
XceI	RCATGY	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.