Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008411

Physical Location & Seq

Genomic Coordinates Forward (+)

15050498 .. 15052239

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCGAAATCCCCGGTAGAGGTGAAACTGATCCCGATCGAAGCTACTCCTGAGAATTTCGCAGACTATGGTCAAGTCATCGAAGCCTCTCGTGACGGTGCAGGTTTCGGTCCCAACGACGCTCAACTGGATCTCTCCAGAGGAATCCCACGGTTCTATATAATGCGGATCAGAGATACACCCTTTGACTTTTCCGTACTCACTCACCACGCGAGCGTGACACAGTGTCTAGGATCAATAGGAGGTCATGTTTGGTACCTTGGAGTGGCTAAACCGACACTTATTGAAGATGGTGATGATGGAAAGATGGTAGATAAATTGAAATCAAGGTCTGGTCACTTGTACGCTCCTCCTGCGGTTGAAGAGATTCGCGTCTTCAGGGTCTCGGGACCAAAGTTTATTAAACTGAACCACGGTACGTGGCATGTTGGACCACTCTTCAGTGACAGCTACATGGACTTCTACAACCTTGAGCTCAGCAACACAAATGCGGTGGATCGCACGACATATGATTTCATCAAAAATAAAGGAGTCACCATCCGAGTTGACCCCAACGATGTTGACACATCGTCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.28

Weight (kDa)

5.64

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35810 AT2G35810 AT2G35820 AT2G35820 AT2G35830 AT2G35830
fragaria_vesca	FvH4_7g20150
malus_domestica	MD07G1179100.v1.1
prunus_persica	Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0364101
rosa_laevigata	RLG00000027516
rosa_multiflora	Rmu_sc0000071.1_g000020 Rmu_sc0011704.1_g000002 Rmu_sc0038795.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292640
rosa_rugosa	Rorug01G0313600
rosa_samantha	Rh1AG321000 Rh1BG284200 Rh1CG300600 Rh1DG315600
rosa_wichuraiana	Rw1G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	92
Acc65I	GGTACC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	255
AccII	CGCG	2 cut(s)	212, 372
AciI	CCGC	3 cut(s)	166, 356, 491
AclWI	GGATC	5 cut(s)	25, 138, 176, 241, 504
AcsI	RAATTY	1 cut(s)	55
AcuI	CTGAAG	2 cut(s)	361, 424
AfaI	GTAC	4 cut(s)	198, 257, 344, 418
AfiI	CCNNNNNNNGG	2 cut(s)	19, 265
AgsI	TTSAA	3 cut(s)	287, 322, 362
AhdI	GACNNNNNGTC	2 cut(s)	225, 568
AluBI	AGCT	3 cut(s)	44, 450, 475
AluI	AGCT	3 cut(s)	44, 450, 475
Alw21I	GWGCWC	1 cut(s)	477
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	5 cut(s)	25, 138, 176, 241, 504
Ama87I	CYCGRG	1 cut(s)	385
ApoI	RAATTY	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	366
Asp718I	GGTACC	1 cut(s)	255
AspS9I	GGNCC	3 cut(s)	110, 389, 431
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	4 cut(s)	34, 197, 305, 526
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	3 cut(s)	110, 389, 431
BanI	GGYRCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	477
BauI	CACGAG	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	477
BccI	CCATC	4 cut(s)	284, 293, 301, 545
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	92
BlpI	GCTNAGC	1 cut(s)	476
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	3 cut(s)	110, 389, 431
BmeRI	GACNNNNNGTC	2 cut(s)	225, 568
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	3 cut(s)	110, 389, 431
BmiI	GGNNCC	3 cut(s)	112, 257, 390
BmrFI	CCNGG	1 cut(s)	14
BoxI	GACNNNNGTC	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	367
BpmI	CTGGAG	1 cut(s)	121
Bpu1102I	GCTNAGC	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	1 cut(s)	14
BsaAI	YACGTR	1 cut(s)	420
BsaBI	GATNNNNATC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	4 cut(s)	12, 149, 259, 412
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 265
Bse1I	ACTGG	1 cut(s)	132
Bse8I	GATNNNNATC	1 cut(s)	35
BseDI	CCNNGG	4 cut(s)	12, 149, 259, 412
BseGI	GGATG	1 cut(s)	537
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	2 cut(s)	19, 265
BseMII	CTCAG	2 cut(s)	42, 490
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	339
BsgI	GTGCAG	1 cut(s)	120
Bsh1236I	CGCG	2 cut(s)	212, 372
Bsh1285I	CGRYCG	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	477
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	2 cut(s)	96, 402
BslI	CCNNNNNNNGG	2 cut(s)	19, 265
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	2 cut(s)	96, 402
Bso31I	GGTCTC	1 cut(s)	388
BsoBI	CYCGRG	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	6 cut(s)	30, 36, 130, 168, 233, 496
Bsp1720I	GCTNAGC	1 cut(s)	476
BspACI	CCGC	3 cut(s)	166, 356, 491
BspCNI	CTCAG	2 cut(s)	43, 489
BspFNI	CGCG	2 cut(s)	212, 372
BspLI	GGNNCC	3 cut(s)	112, 257, 390
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	5 cut(s)	25, 138, 176, 241, 504
BspT107I	GGYRCC	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	4 cut(s)	12, 149, 259, 412
BssMI	GATC	6 cut(s)	30, 36, 130, 168, 233, 496
BssSI	CACGAG	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	259
Bst2BI	CACGAG	1 cut(s)	90
Bst4CI	ACNGT	4 cut(s)	98, 153, 225, 416
Bst6I	CTCTTC	2 cut(s)	357, 443
BstBAI	YACGTR	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	51, 476
BstDSI	CCRYGG	2 cut(s)	149, 412
BstF5I	GGATG	1 cut(s)	537
BstFNI	CGCG	2 cut(s)	212, 372
BstKTI	GATC	6 cut(s)	33, 39, 133, 171, 236, 499
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	6 cut(s)	30, 36, 130, 168, 233, 496
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNSI	RCATGY	1 cut(s)	428
BstPAI	GACNNNNGTC	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	12
BstUI	CGCG	2 cut(s)	212, 372
BstV2I	GAAGAC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BtgI	CCRYGG	2 cut(s)	149, 412
BtsCI	GGATG	1 cut(s)	537
BtsIMutI	CAGTG	2 cut(s)	230, 448
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	214
Cfr13I	GGNCC	3 cut(s)	110, 389, 431
CseI	GACGC	2 cut(s)	128, 361
Csp6I	GTAC	4 cut(s)	197, 256, 343, 417
CspCI	CAANNNNNGTGG	2 cut(s)	474, 509
CviAII	CATG	3 cut(s)	248, 425, 454
CviJI	RGCY	5 cut(s)	44, 86, 269, 450, 475
CviKI_1	RGCY	5 cut(s)	44, 86, 269, 450, 475
CviQI	GTAC	4 cut(s)	197, 256, 343, 417
DdeI	CTNAG	2 cut(s)	51, 476
DpnI	GATC	6 cut(s)	32, 38, 132, 170, 235, 498
DpnII	GATC	6 cut(s)	30, 36, 130, 168, 233, 496
DriI	GACNNNNNGTC	2 cut(s)	225, 568
Eam1104I	CTCTTC	2 cut(s)	357, 443
Eam1105I	GACNNNNNGTC	2 cut(s)	225, 568
EarI	CTCTTC	2 cut(s)	357, 443
Ecl136II	GAGCTC	1 cut(s)	475
Eco130I	CCWWGG	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	477
Eco31I	GGTCTC	1 cut(s)	388
Eco47I	GGWCC	3 cut(s)	110, 389, 431
Eco53kI	GAGCTC	1 cut(s)	475
Eco57I	CTGAAG	2 cut(s)	361, 424
Eco88I	CYCGRG	1 cut(s)	385
EcoICRI	GAGCTC	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	3 cut(s)	251, 428, 457
FaiI	YATR	8 cut(s)	69, 159, 161, 249, 426, 455, 508, 510
FaqI	GGGAC	2 cut(s)	96, 402
FatI	CATG	3 cut(s)	247, 424, 453
FauNDI	CATATG	1 cut(s)	508
FokI	GGATG	1 cut(s)	524
FriOI	GRGCYC	1 cut(s)	477
FspBI	CTAG	1 cut(s)	230
GsuI	CTGGAG	1 cut(s)	121
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	2 cut(s)	128, 361
Hin1II	CATG	3 cut(s)	251, 428, 457
HincII	GTYRAC	2 cut(s)	547, 562
HindII	GTYRAC	2 cut(s)	547, 562
HinfI	GANTC	3 cut(s)	144, 367, 531
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	4 cut(s)	34, 197, 305, 526
Hpy166II	GTNNAC	2 cut(s)	547, 562
Hpy188I	TCNGA	2 cut(s)	173, 542
Hpy188III	TCNNGA	5 cut(s)	34, 50, 92, 138, 387
Hpy8I	GTNNAC	2 cut(s)	547, 562
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4III	ACNGT	4 cut(s)	98, 153, 225, 416
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	2 cut(s)	51, 476
HpySE526I	ACGT	1 cut(s)	419
Hsp92II	CATG	3 cut(s)	251, 428, 457
KpnI	GGTACC	1 cut(s)	259
Kzo9I	GATC	6 cut(s)	30, 36, 130, 168, 233, 496
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	8 cut(s)	27, 63, 87, 113, 151, 318, 364, 366
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	5 cut(s)	92, 217, 335, 443, 532
MalI	GATC	6 cut(s)	32, 38, 132, 170, 235, 498
MboI	GATC	6 cut(s)	30, 36, 130, 168, 233, 496
MboII	GAAGA	4 cut(s)	299, 367, 374, 430
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	2 cut(s)	55, 317
MlyI	GAGTC	1 cut(s)	540
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	5 cut(s)	13, 97, 134, 236, 360
MroXI	GAANNNNTTC	1 cut(s)	366
MseI	TTAA	1 cut(s)	402
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	14
MvnI	CGCG	2 cut(s)	212, 372
MwoI	GCNNNNNNNGC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	14
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	6 cut(s)	30, 36, 130, 168, 233, 496
NlaIII	CATG	3 cut(s)	251, 428, 457
NlaIV	GGNNCC	3 cut(s)	112, 257, 390
NmuCI	GTSAC	5 cut(s)	92, 217, 335, 443, 532
NspI	RCATGY	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	144, 367
Ple19I	CGATCG	1 cut(s)	39
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
Ppu21I	YACGTR	1 cut(s)	420
PshAI	GACNNNNGTC	1 cut(s)	69
Psp124BI	GAGCTC	1 cut(s)	477
PspN4I	GGNNCC	3 cut(s)	112, 257, 390
PspPI	GGNCC	3 cut(s)	110, 389, 431
PsuI	RGATCY	1 cut(s)	130
PvuI	CGATCG	1 cut(s)	39
RsaI	GTAC	4 cut(s)	198, 257, 344, 418
RsaNI	GTAC	4 cut(s)	197, 256, 343, 417
SacI	GAGCTC	1 cut(s)	477
SaqAI	TTAA	1 cut(s)	402
Sau3AI	GATC	6 cut(s)	30, 36, 130, 168, 233, 496
Sau96I	GGNCC	3 cut(s)	110, 389, 431
SchI	GAGTC	1 cut(s)	540
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	477
SinI	GGWCC	3 cut(s)	110, 389, 431
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	2 cut(s)	55, 317
SsiI	CCGC	3 cut(s)	166, 356, 491
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	4 cut(s)	98, 153, 225, 416
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	2 cut(s)	39, 81
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	2 cut(s)	55, 317
TfiI	GAWTC	2 cut(s)	144, 367
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	2 cut(s)	230, 448
TseFI	GTSAC	5 cut(s)	92, 217, 335, 443, 532
Tsp45I	GTSAC	5 cut(s)	92, 217, 335, 443, 532
TspDTI	ATGAA	1 cut(s)	505
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	2 cut(s)	230, 448
VpaK11BI	GGWCC	3 cut(s)	110, 389, 431
XapI	RAATTY	1 cut(s)	55
XceI	RCATGY	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.