Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008411

Physical Location & Seq

Genomic Coordinates Forward (+)

15052199 .. 15053276

Gene Structure 1078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCGAAATCTCCGGTGGAAGTGAATTTGATTCCTATCGAAGCTACTCCGGAGAACTTCGCAGAGTATGGTCAAGTCATTGAAGCCTCTCGTGATGGTGCTGGTTTCGGTCCCCACGACGCTCAACTAGATCTCTCTAGAGGAACCCCACGGCTGAAAGAAACACCCTTAGGGTTTTTCAAGATCACACATCACGCAAAGGTGACACAGTGTCTAGGATCAATAGGAGGTGATGTTTGGTATATGGGAGTGGCTAAGCCGTCTCTTATTGAAGATGATGACGATGATGGAAGGAGCGTAGATACAGTAAAATCAAAGTCTGGTCACTTATACATTCCACCTGAGGTGGAAGAGATTCGCGTCTTCAGGTTCTCGGGACCAAAGTTTGTGAAACTGCACCGTGGTACATGGCATGCTGGACCCTTGTTTAGTGGCAGCTCCTTCATGGATTTCTACAACTTAGAGCTCAGCAACACAAATGTGGTGGATCACACGTCACATGATTTCACCAAGAATAATGGAGTCAGCTTCGGATTTGACACATTGTCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.23

Weight (kDa)

5.4

Isoelectric Point (pI)

26.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35810 AT2G35810 AT2G35820 AT2G35820 AT2G35830 AT2G35830
fragaria_vesca	FvH4_7g20150
malus_domestica	MD07G1179100.v1.1
prunus_persica	Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0364101
rosa_laevigata	RLG00000027516
rosa_multiflora	Rmu_sc0000071.1_g000020 Rmu_sc0011704.1_g000002 Rmu_sc0038795.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292640
rosa_rugosa	Rorug01G0313600
rosa_samantha	Rh1AG321000 Rh1BG284200 Rh1CG300600 Rh1DG315600
rosa_wichuraiana	Rw1G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	360
AccIII	TCCGGA	1 cut(s)	49
AclWI	GGATC	2 cut(s)	226, 495
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	349
AfaI	GTAC	1 cut(s)	406
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	3 cut(s)	83, 181, 272
AhdI	GACNNNNNGTC	2 cut(s)	210, 544
AjiI	CACGTC	1 cut(s)	495
AleI	CACNNNNGTG	1 cut(s)	479
AluBI	AGCT	4 cut(s)	44, 438, 466, 528
AluI	AGCT	4 cut(s)	44, 438, 466, 528
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	2 cut(s)	226, 495
Ama87I	CYCGRG	1 cut(s)	373
Aor13HI	TCCGGA	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	435
ApoI	RAATTY	1 cut(s)	25
Asp700I	GAANNNNTTC	1 cut(s)	354
AspS9I	GGNCC	3 cut(s)	110, 377, 419
AsuHPI	GGTGA	3 cut(s)	214, 242, 499
AvaI	CYCGRG	1 cut(s)	373
AvaII	GGWCC	3 cut(s)	110, 377, 419
AxyI	CCTNAGG	2 cut(s)	169, 342
BanII	GRGCYC	1 cut(s)	468
BauI	CACGAG	1 cut(s)	90
BbsI	GAAGAC	2 cut(s)	355, 540
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	447
BccI	CCATC	2 cut(s)	89, 281
BceAI	ACGGC	2 cut(s)	167, 244
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	4 cut(s)	128, 138, 215, 553
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	1 cut(s)	436
BlpI	GCTNAGC	2 cut(s)	255, 467
BlsI	GCNGC	1 cut(s)	437
Bme18I	GGWCC	3 cut(s)	110, 377, 419
BmeRI	GACNNNNNGTC	2 cut(s)	210, 544
BmeT110I	CYCGRG	1 cut(s)	373
BmgBI	CACGTC	1 cut(s)	495
BmgT120I	GGNCC	3 cut(s)	110, 377, 419
BmiI	GGNNCC	4 cut(s)	112, 145, 378, 421
BpiI	GAAGAC	2 cut(s)	355, 540
Bpu1102I	GCTNAGC	2 cut(s)	255, 467
BsaBI	GATNNNNATC	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	149, 400
BsaWI	WCCGGW	2 cut(s)	13, 49
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bse21I	CCTNAGG	2 cut(s)	169, 342
Bse8I	GATNNNNATC	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	49
BseDI	CCNNGG	2 cut(s)	149, 400
BseJI	GATNNNNATC	1 cut(s)	35
BseMII	CTCAG	2 cut(s)	333, 481
BseXI	GCAGC	1 cut(s)	447
BsgI	GTGCAG	1 cut(s)	380
Bsh1236I	CGCG	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	468
BsiHKCI	CYCGRG	1 cut(s)	373
BsiSI	CCGG	2 cut(s)	14, 50
BslFI	GGGAC	2 cut(s)	96, 390
BsmAI	GTCTC	1 cut(s)	267
BsmBI	CGTCTC	1 cut(s)	267
BsmFI	GGGAC	2 cut(s)	96, 390
BsoBI	CYCGRG	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	130, 183, 218, 487
Bsp1720I	GCTNAGC	2 cut(s)	255, 467
BspCNI	CTCAG	2 cut(s)	334, 480
BspEI	TCCGGA	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	4 cut(s)	112, 145, 378, 421
BspPI	GGATC	2 cut(s)	226, 495
BssECI	CCNNGG	2 cut(s)	149, 400
BssMI	GATC	4 cut(s)	130, 183, 218, 487
BssSI	CACGAG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	90
Bst4CI	ACNGT	3 cut(s)	210, 307, 401
Bst6I	CTCTTC	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	5 cut(s)	169, 255, 342, 460, 467
BstDSI	CCRYGG	2 cut(s)	149, 400
BstFNI	CGCG	1 cut(s)	360
BstKTI	GATC	4 cut(s)	133, 186, 221, 490
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	4 cut(s)	130, 183, 218, 487
BstNSI	RCATGY	1 cut(s)	416
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	447
BstV2I	GAAGAC	2 cut(s)	355, 540
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
Bsu36I	CCTNAGG	2 cut(s)	169, 342
BtgI	CCRYGG	2 cut(s)	149, 400
BtrI	CACGTC	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	215
Cac8I	GCNNGC	1 cut(s)	414
Cfr13I	GGNCC	3 cut(s)	110, 377, 419
CseI	GACGC	2 cut(s)	128, 349
Csp6I	GTAC	1 cut(s)	405
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	4 cut(s)	408, 413, 445, 500
CviJI	RGCY	8 cut(s)	44, 86, 154, 254, 259, 438, 466, 528
CviKI_1	RGCY	8 cut(s)	44, 86, 154, 254, 259, 438, 466, 528
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	5 cut(s)	169, 255, 342, 460, 467
DpnI	GATC	4 cut(s)	132, 185, 220, 489
DpnII	GATC	4 cut(s)	130, 183, 218, 487
DriI	GACNNNNNGTC	2 cut(s)	210, 544
Eam1104I	CTCTTC	1 cut(s)	345
Eam1105I	GACNNNNNGTC	2 cut(s)	210, 544
EarI	CTCTTC	1 cut(s)	345
Ecl136II	GAGCTC	1 cut(s)	466
Eco24I	GRGCYC	1 cut(s)	468
Eco47I	GGWCC	3 cut(s)	110, 377, 419
Eco53kI	GAGCTC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	349
Eco81I	CCTNAGG	2 cut(s)	169, 342
Eco88I	CYCGRG	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	468
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	4 cut(s)	411, 416, 448, 503
FaiI	YATR	8 cut(s)	69, 243, 245, 331, 409, 414, 446, 501
FaqI	GGGAC	2 cut(s)	96, 390
FatI	CATG	4 cut(s)	407, 412, 444, 499
Fnu4HI	GCNGC	1 cut(s)	436
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	1 cut(s)	436
FspBI	CTAG	4 cut(s)	128, 138, 215, 553
GluI	GCNGC	1 cut(s)	436
HapII	CCGG	2 cut(s)	14, 50
HgaI	GACGC	2 cut(s)	128, 349
Hin1II	CATG	4 cut(s)	411, 416, 448, 503
HinfI	GANTC	3 cut(s)	31, 355, 522
HpaII	CCGG	2 cut(s)	14, 50
HphI	GGTGA	3 cut(s)	214, 242, 499
Hpy188I	TCNGA	1 cut(s)	533
Hpy188III	TCNNGA	5 cut(s)	50, 92, 138, 181, 375
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	285, 451
HpyCH4III	ACNGT	3 cut(s)	210, 307, 401
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	1 cut(s)	397
HpyF3I	CTNAG	5 cut(s)	169, 255, 342, 460, 467
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	4 cut(s)	411, 416, 448, 503
Kpn2I	TCCGGA	1 cut(s)	49
Kzo9I	GATC	4 cut(s)	130, 183, 218, 487
LmnI	GCTCC	2 cut(s)	294, 443
LpnPI	CCDG	7 cut(s)	27, 63, 87, 306, 352, 354, 402
Lsp1109I	GCAGC	1 cut(s)	447
MaeI	CTAG	4 cut(s)	128, 138, 215, 553
MaeII	ACGT	1 cut(s)	494
MaeIII	GTNAC	3 cut(s)	202, 323, 495
MalI	GATC	4 cut(s)	132, 185, 220, 489
MboI	GATC	4 cut(s)	130, 183, 218, 487
MboII	GAAGA	4 cut(s)	284, 355, 362, 540
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	531
MnlI	CCTC	4 cut(s)	97, 134, 221, 337
MroI	TCCGGA	1 cut(s)	49
MroXI	GAANNNNTTC	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	479
MspI	CCGG	2 cut(s)	14, 50
MvnI	CGCG	1 cut(s)	360
NdeII	GATC	4 cut(s)	130, 183, 218, 487
NlaIII	CATG	4 cut(s)	411, 416, 448, 503
NlaIV	GGNNCC	4 cut(s)	112, 145, 378, 421
NmuCI	GTSAC	3 cut(s)	202, 323, 495
NspI	RCATGY	1 cut(s)	416
OliI	CACNNNNGTG	1 cut(s)	479
PaeI	GCATGC	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	2 cut(s)	31, 355
PkrI	GCNGC	1 cut(s)	437
PleI	GAGTC	1 cut(s)	530
PpsI	GAGTC	1 cut(s)	530
Psp124BI	GAGCTC	1 cut(s)	468
PspN4I	GGNNCC	4 cut(s)	112, 145, 378, 421
PspPI	GGNCC	3 cut(s)	110, 377, 419
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	479
SacI	GAGCTC	1 cut(s)	468
SatI	GCNGC	1 cut(s)	436
Sau3AI	GATC	4 cut(s)	130, 183, 218, 487
Sau96I	GGNCC	3 cut(s)	110, 377, 419
SchI	GAGTC	1 cut(s)	531
SduI	GDGCHC	1 cut(s)	468
SinI	GGWCC	3 cut(s)	110, 377, 419
SmiMI	CAYNNNNRTG	1 cut(s)	479
SphI	GCATGC	1 cut(s)	416
Sse9I	AATT	1 cut(s)	25
SspMI	CTAG	4 cut(s)	128, 138, 215, 553
SstI	GAGCTC	1 cut(s)	468
TaaI	ACNGT	3 cut(s)	210, 307, 401
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	1 cut(s)	39
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	1 cut(s)	25
TfiI	GAWTC	2 cut(s)	31, 355
TscAI	CASTG	1 cut(s)	215
TseFI	GTSAC	3 cut(s)	202, 323, 495
TseI	GCWGC	1 cut(s)	435
Tsp45I	GTSAC	3 cut(s)	202, 323, 495
TspDTI	ATGAA	1 cut(s)	433
TspRI	CASTG	1 cut(s)	215
VpaK11BI	GGWCC	3 cut(s)	110, 377, 419
XapI	RAATTY	1 cut(s)	25
XbaI	TCTAGA	1 cut(s)	137
XceI	RCATGY	1 cut(s)	416
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	4 cut(s)	128, 138, 215, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.