Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008411

Physical Location & Seq

Genomic Coordinates Forward (+)

55531244 .. 55532090

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG321000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAAAAAGAAGAGATGGAAATTTCCGGCGAGGAGTTGAGGACTGTGAAGCTGAAGCCGATTGAAGCGACGCCGGAGGCGTTTGGGGAGTACGGTCAGGTTGTGGAGGCCTCGCCTGACGGCGACGAGTTTGGTCCTCGTGATGCTCAGCTAGACCTTAGCCGTGGAGTTCCCAGGTTCTACATTATGCACCTTGAAGATCGACCGCTGAAATTTACCAACATGACTCACCACGCCAGCGTCACGCAGTGTCTTGGGGCCATTGGTGGCCATGTTTGGTATCTCGGAGTTGCTAAGCCTTCCATTGTGGAAGAGAAGGGCAACAATGTGGTGAAGTCTCGTTGTGCTTCTGGTCATTACTATGTGCCTCCTTCTGTCGAGGATGTTCGTGTTTTCAAGATTACAGGTCCCAAATTTCTCAAGCTTAACCGGGGGACATGGCATGCAGGGCCTTTGTTCAGGGCAGAGAGCATGGACTTCTACAATTTGGAGCTCAGCAATACCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.95

Weight (kDa)

6.08

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35810 AT2G35810 AT2G35820 AT2G35820 AT2G35830 AT2G35830
fragaria_vesca	FvH4_7g20150
malus_domestica	MD07G1179100.v1.1
prunus_persica	Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0364101
rosa_laevigata	RLG00000027516
rosa_multiflora	Rmu_sc0000071.1_g000020 Rmu_sc0011704.1_g000002 Rmu_sc0038795.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292640
rosa_rugosa	Rorug01G0313600
rosa_samantha	Rh1AG321000 Rh1BG284200 Rh1CG300600 Rh1DG315600
rosa_wichuraiana	Rw1G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	206
AcoI	YGGCCR	1 cut(s)	268
AcsI	RAATTY	3 cut(s)	21, 212, 413
AcuI	CTGAAG	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	71
AdeI	CACNNNGTG	1 cut(s)	249
AfaI	GTAC	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	65, 197, 397
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	4 cut(s)	52, 151, 424, 493
AluI	AGCT	4 cut(s)	52, 151, 424, 493
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	1 cut(s)	342
AoxI	GGCC	4 cut(s)	108, 258, 268, 449
ApoI	RAATTY	3 cut(s)	21, 212, 413
AspS9I	GGNCC	4 cut(s)	134, 258, 407, 449
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	2 cut(s)	221, 343
AvaII	GGWCC	2 cut(s)	134, 407
BalI	TGGCCA	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	495
BauI	CACGAG	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	495
BccI	CCATC	1 cut(s)	10
BceAI	ACGGC	2 cut(s)	136, 147
BciT130I	CCWGG	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	2 cut(s)	152, 508
BlpI	GCTNAGC	3 cut(s)	147, 294, 494
Bme1390I	CCNGG	2 cut(s)	175, 431
Bme18I	GGWCC	2 cut(s)	134, 407
BmgT120I	GGNCC	4 cut(s)	134, 258, 407, 449
BmiI	GGNNCC	2 cut(s)	259, 409
BmrFI	CCNGG	2 cut(s)	175, 431
BmsI	GCATC	1 cut(s)	133
Bpu10I	CCTNAGC	1 cut(s)	158
Bpu1102I	GCTNAGC	3 cut(s)	147, 294, 494
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	3 cut(s)	163, 173, 430
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	3 cut(s)	163, 173, 430
BseGI	GGATG	1 cut(s)	388
BseMII	CTCAG	2 cut(s)	161, 508
BseRI	GAGGAG	1 cut(s)	47
Bsh1285I	CGRYCG	1 cut(s)	206
BshFI	GGCC	4 cut(s)	110, 260, 270, 451
BsiEI	CGRYCG	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	495
BsiSI	CCGG	3 cut(s)	27, 74, 430
BslFI	GGGAC	2 cut(s)	393, 448
BsmAI	GTCTC	1 cut(s)	342
BsmFI	GGGAC	2 cut(s)	393, 448
BsnI	GGCC	4 cut(s)	110, 260, 270, 451
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	1 cut(s)	199
Bsp1720I	GCTNAGC	3 cut(s)	147, 294, 494
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	4 cut(s)	110, 260, 270, 451
BspCNI	CTCAG	2 cut(s)	160, 507
BspLI	GGNNCC	2 cut(s)	259, 409
BssECI	CCNNGG	3 cut(s)	163, 173, 430
BssMI	GATC	1 cut(s)	199
BssNI	GRCGYC	1 cut(s)	71
BssSI	CACGAG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	2 cut(s)	46, 95
Bst6I	CTCTTC	2 cut(s)	6, 306
BstACI	GRCGYC	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	238, 444
BstDEI	CTNAG	4 cut(s)	147, 158, 294, 494
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	1 cut(s)	199
BstMCI	CGRYCG	1 cut(s)	206
BstMWI	GCNNNNNNNGC	1 cut(s)	448
BstNI	CCWGG	1 cut(s)	175
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	173, 429
BsuRI	GGCC	4 cut(s)	110, 260, 270, 451
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	388
BtsI	GCAGTG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	2 cut(s)	238, 444
Cfr13I	GGNCC	4 cut(s)	134, 258, 407, 449
CseI	GACGC	2 cut(s)	79, 229
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	5 cut(s)	223, 272, 438, 443, 472
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	4 cut(s)	147, 158, 294, 494
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DraIII	CACNNNGTG	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	268
Eam1104I	CTCTTC	2 cut(s)	6, 306
EarI	CTCTTC	2 cut(s)	6, 306
Ecl136II	GAGCTC	1 cut(s)	493
Eco147I	AGGCCT	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	495
Eco47I	GGWCC	2 cut(s)	134, 407
Eco53kI	GAGCTC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	493
EcoO109I	RGGNCCY	2 cut(s)	407, 449
EcoRII	CCWGG	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	495
FaeI	CATG	5 cut(s)	226, 275, 441, 446, 475
FaiI	YATR	7 cut(s)	188, 224, 273, 363, 439, 444, 473
FaqI	GGGAC	2 cut(s)	393, 448
FatI	CATG	5 cut(s)	222, 271, 437, 442, 471
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	495
FspBI	CTAG	2 cut(s)	152, 508
HaeIII	GGCC	4 cut(s)	110, 260, 270, 451
HapII	CCGG	3 cut(s)	27, 74, 430
HgaI	GACGC	2 cut(s)	79, 229
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	5 cut(s)	226, 275, 441, 446, 475
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	1 cut(s)	226
HpaII	CCGG	3 cut(s)	27, 74, 430
HphI	GGTGA	2 cut(s)	221, 343
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	2 cut(s)	140, 397
Hpy99I	CGWCG	2 cut(s)	73, 128
HpyAV	CCTTC	3 cut(s)	309, 310, 381
HpyCH4III	ACNGT	2 cut(s)	46, 95
HpyCH4V	TGCA	2 cut(s)	190, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	448
HpyF3I	CTNAG	4 cut(s)	147, 158, 294, 494
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	5 cut(s)	226, 275, 441, 446, 475
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	490
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	2 cut(s)	152, 508
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	3 cut(s)	23, 209, 323
MhlI	GDGCHC	1 cut(s)	495
MlsI	TGGCCA	1 cut(s)	270
MluCI	AATT	4 cut(s)	21, 212, 413, 484
MluNI	TGGCCA	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	8 cut(s)	25, 33, 70, 100, 121, 147, 373, 378
Mox20I	TGGCCA	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	270
MseI	TTAA	1 cut(s)	426
MslI	CAYNNNNRTG	1 cut(s)	360
Msp20I	TGGCCA	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	208
MspI	CCGG	3 cut(s)	27, 74, 430
MspR9I	CCNGG	2 cut(s)	175, 431
MvaI	CCWGG	1 cut(s)	175
MwoI	GCNNNNNNNGC	1 cut(s)	448
NciI	CCSGG	1 cut(s)	431
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	5 cut(s)	226, 275, 441, 446, 475
NlaIV	GGNNCC	2 cut(s)	259, 409
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	446
PaeI	GCATGC	1 cut(s)	446
PceI	AGGCCT	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PpuMI	RGGWCCY	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	495
Psp5II	RGGWCCY	1 cut(s)	407
Psp6I	CCWGG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	259, 409
PspPI	GGNCC	4 cut(s)	134, 258, 407, 449
PspPPI	RGGWCCY	1 cut(s)	407
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	360
SacI	GAGCTC	1 cut(s)	495
SaqAI	TTAA	1 cut(s)	426
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	4 cut(s)	134, 258, 407, 449
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	175, 431
SduI	GDGCHC	1 cut(s)	495
SetI	ASST	9 cut(s)	54, 102, 153, 159, 179, 195, 409, 426, 495
SfaNI	GCATC	1 cut(s)	133
SinI	GGWCC	2 cut(s)	134, 407
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SphI	GCATGC	1 cut(s)	446
Sse9I	AATT	4 cut(s)	21, 212, 413, 484
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	2 cut(s)	152, 508
SstI	GAGCTC	1 cut(s)	495
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	173, 429
TaaI	ACNGT	2 cut(s)	46, 95
TaqI	TCGA	2 cut(s)	202, 378
TasI	AATT	4 cut(s)	21, 212, 413, 484
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	1 cut(s)	254
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	134, 407
XapI	RAATTY	3 cut(s)	21, 212, 413
XceI	RCATGY	1 cut(s)	446
XspI	CTAG	2 cut(s)	152, 508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.