Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008411

Physical Location & Seq

Genomic Coordinates Forward (+)

16435628 .. 16437023

Gene Structure 1396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGGTGAAGAGTGTGAAGCTGAAGGCGATTGAAGCGACGCCGGAGACTTTTGGGGAGTACGGTCAGGTTGTGGAGGCGTCGCCGGACGGCGATGAGTTTGGTCCTCGGGATGCTCAGCTGGACCTTAGCCGTGGAATTCCCAGGTTCTATATTATGCATCTTGAAGATCGACCGCTGAAGTTTACGAACATTACTCACCATGCCAGCGTCACGCAGTGTCTTGGGGCTATTGGCGGCCATGTTTGGTATCTCGGAATTGCTAAGGCTTCGATTGTGGATGAAAAGGGTGACAATCTGGTGAAGTCTAGATGTGCTTCTGGTCATTACTATGTGCCTCCTTCTGTCGAGGATGTTCGCGTTTTTAAGATCACAGGCAGCAAATTTCTCAAGCTTAACCGGGGGACATGGCACGCAGGGCCTTTGTTCAGGGCAGAGAGTATGGATTTTTACAATTTGGAGCTCAGCAATACCAATGTGGTTGATCACACATTACATGACTTCGTGAAGGAAAATGGAGTGGAGTTTGTAATAGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.14

Weight (kDa)

5.6

Isoelectric Point (pI)

21.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35810 AT2G35810 AT2G35820 AT2G35820 AT2G35830 AT2G35830
fragaria_vesca	FvH4_7g20150
malus_domestica	MD07G1179100.v1.1
prunus_persica	Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0364101
rosa_laevigata	RLG00000027516
rosa_multiflora	Rmu_sc0000071.1_g000020 Rmu_sc0011704.1_g000002 Rmu_sc0038795.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292640
rosa_rugosa	Rorug01G0313600
rosa_samantha	Rh1AG321000 Rh1BG284200 Rh1CG300600 Rh1DG315600
rosa_wichuraiana	Rw1G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	360
AciI	CCGC	2 cut(s)	176, 237
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	2 cut(s)	138, 383
AcuI	CTGAAG	2 cut(s)	44, 200
AcyI	GRCGYC	2 cut(s)	41, 80
AdeI	CACNNNGTG	1 cut(s)	219
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	2 cut(s)	35, 167
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	4 cut(s)	22, 121, 394, 463
AluI	AGCT	4 cut(s)	22, 121, 394, 463
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	2 cut(s)	238, 419
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	2 cut(s)	138, 383
AspS9I	GGNCC	3 cut(s)	104, 124, 419
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	4 cut(s)	19, 191, 302, 313
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	2 cut(s)	104, 124
BanII	GRGCYC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	390
BceAI	ACGGC	2 cut(s)	106, 117
BciT130I	CCWGG	1 cut(s)	145
BclI	TGATCA	1 cut(s)	484
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	309
BisI	GCNGC	2 cut(s)	238, 379
BlpI	GCTNAGC	2 cut(s)	117, 464
BlsI	GCNGC	2 cut(s)	239, 380
Bme1390I	CCNGG	2 cut(s)	145, 401
Bme18I	GGWCC	2 cut(s)	104, 124
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	3 cut(s)	104, 124, 419
BmrFI	CCNGG	2 cut(s)	145, 401
BmsI	GCATC	2 cut(s)	103, 169
Bpu10I	CCTNAGC	2 cut(s)	128, 264
Bpu1102I	GCTNAGC	2 cut(s)	117, 464
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	401
BsaHI	GRCGYC	2 cut(s)	41, 80
BsaJI	CCNNGG	4 cut(s)	107, 133, 143, 400
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	4 cut(s)	107, 133, 143, 400
BseGI	GGATG	3 cut(s)	118, 286, 358
BseMII	CTCAG	2 cut(s)	131, 478
BseXI	GCAGC	1 cut(s)	390
Bsh1236I	CGCG	1 cut(s)	360
Bsh1285I	CGRYCG	1 cut(s)	176
BshFI	GGCC	2 cut(s)	240, 421
BsiEI	CGRYCG	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	465
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	3 cut(s)	44, 86, 400
BslFI	GGGAC	1 cut(s)	418
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	418
BsnI	GGCC	2 cut(s)	240, 421
BsoBI	CYCGRG	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	3 cut(s)	169, 369, 484
Bsp1720I	GCTNAGC	2 cut(s)	117, 464
BspACI	CCGC	2 cut(s)	176, 237
BspANI	GGCC	2 cut(s)	240, 421
BspCNI	CTCAG	2 cut(s)	130, 477
BspFNI	CGCG	1 cut(s)	360
BssECI	CCNNGG	4 cut(s)	107, 133, 143, 400
BssMI	GATC	3 cut(s)	169, 369, 484
BssNI	GRCGYC	2 cut(s)	41, 80
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	5
BstACI	GRCGYC	2 cut(s)	41, 80
BstC8I	GCNNGC	2 cut(s)	208, 414
BstDEI	CTNAG	4 cut(s)	117, 128, 264, 464
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	3 cut(s)	118, 286, 358
BstFNI	CGCG	1 cut(s)	360
BstKTI	GATC	3 cut(s)	172, 372, 487
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	3 cut(s)	169, 369, 484
BstMCI	CGRYCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 418
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	2 cut(s)	143, 399
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	240, 421
BtgI	CCRYGG	1 cut(s)	133
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	3 cut(s)	118, 286, 358
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	208, 414
Cfr13I	GGNCC	3 cut(s)	104, 124, 419
CseI	GACGC	3 cut(s)	49, 69, 199
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	4 cut(s)	203, 242, 408, 497
CviJI	RGCY	9 cut(s)	22, 121, 132, 230, 240, 269, 394, 421, 463
CviKI_1	RGCY	9 cut(s)	22, 121, 132, 230, 240, 269, 394, 421, 463
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	4 cut(s)	117, 128, 264, 464
DpnI	GATC	3 cut(s)	171, 371, 486
DpnII	GATC	3 cut(s)	169, 369, 484
DraIII	CACNNNGTG	1 cut(s)	219
EaeI	YGGCCR	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Ecl136II	GAGCTC	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	465
Eco47I	GGWCC	2 cut(s)	104, 124
Eco53kI	GAGCTC	1 cut(s)	463
Eco57I	CTGAAG	2 cut(s)	44, 200
Eco88I	CYCGRG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	463
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	465
FaeI	CATG	4 cut(s)	206, 245, 411, 500
FaiI	YATR	8 cut(s)	153, 158, 204, 243, 333, 409, 443, 498
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	4 cut(s)	202, 241, 407, 496
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	2 cut(s)	238, 379
FokI	GGATG	3 cut(s)	125, 293, 365
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	2 cut(s)	238, 379
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	2 cut(s)	238, 379
HaeIII	GGCC	2 cut(s)	240, 421
HapII	CCGG	3 cut(s)	44, 86, 400
HgaI	GACGC	3 cut(s)	49, 69, 199
Hin1I	GRCGYC	2 cut(s)	41, 80
Hin1II	CATG	4 cut(s)	206, 245, 411, 500
HindIII	AAGCTT	1 cut(s)	392
HpaII	CCGG	3 cut(s)	44, 86, 400
HphI	GGTGA	4 cut(s)	19, 191, 302, 313
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	4 cut(s)	110, 164, 309, 505
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	2 cut(s)	43, 85
HpyAV	CCTTC	3 cut(s)	19, 351, 502
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 418
HpyF3I	CTNAG	4 cut(s)	117, 128, 264, 464
Hsp92I	GRCGYC	2 cut(s)	41, 80
Hsp92II	CATG	4 cut(s)	206, 245, 411, 500
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	3 cut(s)	169, 369, 484
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	2 cut(s)	103, 169
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	211, 290
MalI	GATC	3 cut(s)	171, 371, 486
MboI	GATC	3 cut(s)	169, 369, 484
MboII	GAAGA	2 cut(s)	22, 179
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	4 cut(s)	138, 258, 383, 454
MnlI	CCTC	4 cut(s)	70, 117, 343, 348
Mph1103I	ATGCAT	1 cut(s)	162
MseI	TTAA	2 cut(s)	366, 396
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	2 cut(s)	121, 178
MspI	CCGG	3 cut(s)	44, 86, 400
MspR9I	CCNGG	2 cut(s)	145, 401
MvaI	CCWGG	1 cut(s)	145
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	35, 418
NciI	CCSGG	1 cut(s)	401
NdeII	GATC	3 cut(s)	169, 369, 484
NlaIII	CATG	4 cut(s)	206, 245, 411, 500
NmuCI	GTSAC	2 cut(s)	211, 290
NsiI	ATGCAT	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	239, 380
Psp124BI	GAGCTC	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspPI	GGNCC	3 cut(s)	104, 124, 419
PvuII	CAGCTG	1 cut(s)	121
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	330
SacI	GAGCTC	1 cut(s)	465
SaqAI	TTAA	2 cut(s)	366, 396
SatI	GCNGC	2 cut(s)	238, 379
Sau3AI	GATC	3 cut(s)	169, 369, 484
Sau96I	GGNCC	3 cut(s)	104, 124, 419
ScrFI	CCNGG	2 cut(s)	145, 401
SduI	GDGCHC	1 cut(s)	465
SetI	ASST	8 cut(s)	9, 24, 72, 123, 129, 149, 396, 465
SfaNI	GCATC	2 cut(s)	103, 169
SinI	GGWCC	2 cut(s)	104, 124
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	4 cut(s)	138, 258, 383, 454
SsiI	CCGC	2 cut(s)	176, 237
SspMI	CTAG	1 cut(s)	309
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	2 cut(s)	143, 399
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	172, 272, 348
TasI	AATT	4 cut(s)	138, 258, 383, 454
TauI	GCSGC	1 cut(s)	240
Tru1I	TTAA	2 cut(s)	366, 396
Tru9I	TTAA	2 cut(s)	366, 396
TscAI	CASTG	1 cut(s)	224
TseFI	GTSAC	2 cut(s)	211, 290
TseI	GCWGC	1 cut(s)	378
Tsp45I	GTSAC	2 cut(s)	211, 290
TspDTI	ATGAA	1 cut(s)	297
TspRI	CASTG	1 cut(s)	224
VpaK11BI	GGWCC	2 cut(s)	104, 124
XapI	RAATTY	2 cut(s)	138, 383
XbaI	TCTAGA	1 cut(s)	308
XspI	CTAG	1 cut(s)	309
Zsp2I	ATGCAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.