Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038795.1

Orthogroup ID

OG0008411

Physical Location & Seq

Genomic Coordinates Reverse (-)

478 .. 902

Gene Structure 425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038795.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 344 bp

ctcaccacgccagcgtgacgcagtgtcttggggccattggcggccatgtttggtatctcggagttgctaagccttctattgcggaagagaagggcaacaatgtggtgaagtctcgttgtgcttctggtcattactatgtgcctccttctgtcgaggatgttcgtgttttcaagattacaggtcccaaatttctcaagcttaaccgggggacatggcatgcagggcctttgttcagggcagagagcatggacttctacaatttggagctcagcaataccaacgtggttgatcacacattacatgacttcgtgaaggaaaatggagttaagtttctaatagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.59

Weight (kDa)

8.01

Isoelectric Point (pI)

21.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35810 AT2G35810 AT2G35820 AT2G35820 AT2G35830 AT2G35830
fragaria_vesca	FvH4_7g20150
malus_domestica	MD07G1179100.v1.1
prunus_persica	Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1 Prupe.2G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0364101
rosa_laevigata	RLG00000027516
rosa_multiflora	Rmu_sc0000071.1_g000020 Rmu_sc0011704.1_g000002 Rmu_sc0038795.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292640
rosa_rugosa	Rorug01G0313600
rosa_samantha	Rh1AG321000 Rh1BG284200 Rh1CG300600 Rh1DG315600
rosa_wichuraiana	Rw1G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	41, 82
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	171
AhdI	GACNNNNNGTC	1 cut(s)	23
AluBI	AGCT	2 cut(s)	198, 267
AluI	AGCT	2 cut(s)	198, 267
Alw21I	GWGCWC	1 cut(s)	269
Alw26I	GTCTC	1 cut(s)	116
AoxI	GGCC	3 cut(s)	32, 42, 223
ApoI	RAATTY	1 cut(s)	187
AspS9I	GGNCC	3 cut(s)	32, 181, 223
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	269
BclI	TGATCA	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	116
BisI	GCNGC	1 cut(s)	42
BlpI	GCTNAGC	2 cut(s)	68, 268
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	205
Bme18I	GGWCC	1 cut(s)	181
BmeRI	GACNNNNNGTC	1 cut(s)	23
BmgT120I	GGNCC	3 cut(s)	32, 181, 223
BmiI	GGNNCC	2 cut(s)	33, 183
BmrFI	CCNGG	1 cut(s)	205
Bpu1102I	GCTNAGC	2 cut(s)	68, 268
BpuEI	CTTGAG	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	34, 44, 225
BsiHKAI	GWGCWC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	2 cut(s)	167, 222
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	2 cut(s)	167, 222
BsnI	GGCC	3 cut(s)	34, 44, 225
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	288
Bsp1720I	GCTNAGC	2 cut(s)	68, 268
BspACI	CCGC	2 cut(s)	41, 82
BspANI	GGCC	3 cut(s)	34, 44, 225
BspCNI	CTCAG	1 cut(s)	281
BspLI	GGNNCC	2 cut(s)	33, 183
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	288
Bst6I	CTCTTC	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	12, 218
BstDEI	CTNAG	2 cut(s)	68, 268
BstF5I	GGATG	1 cut(s)	162
BstKTI	GATC	1 cut(s)	291
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	288
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	203
BsuRI	GGCC	3 cut(s)	34, 44, 225
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
Cac8I	GCNNGC	2 cut(s)	12, 218
Cfr13I	GGNCC	3 cut(s)	32, 181, 223
CseI	GACGC	1 cut(s)	27
CviAII	CATG	5 cut(s)	46, 212, 217, 246, 301
CviJI	RGCY	6 cut(s)	34, 44, 72, 198, 225, 267
CviKI_1	RGCY	6 cut(s)	34, 44, 72, 198, 225, 267
DdeI	CTNAG	2 cut(s)	68, 268
DpnI	GATC	1 cut(s)	290
DpnII	GATC	1 cut(s)	288
DriI	GACNNNNNGTC	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	80
Eam1105I	GACNNNNNGTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	80
Ecl136II	GAGCTC	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	267
EcoO109I	RGGNCCY	2 cut(s)	181, 223
EcoT38I	GRGCYC	1 cut(s)	269
FaeI	CATG	5 cut(s)	49, 215, 220, 249, 304
FaiI	YATR	6 cut(s)	47, 137, 213, 218, 247, 302
FaqI	GGGAC	2 cut(s)	167, 222
FatI	CATG	5 cut(s)	45, 211, 216, 245, 300
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	169
FriOI	GRGCYC	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	34, 44, 225
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	27
Hin1II	CATG	5 cut(s)	49, 215, 220, 249, 304
HindIII	AAGCTT	1 cut(s)	196
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	1 cut(s)	117
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	171, 309
HpyAV	CCTTC	4 cut(s)	83, 84, 155, 306
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	2 cut(s)	68, 268
HpySE526I	ACGT	1 cut(s)	281
Hsp92II	CATG	5 cut(s)	49, 215, 220, 249, 304
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	6 cut(s)	24, 110, 164, 206, 217, 219
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	1 cut(s)	290
MboI	GATC	1 cut(s)	288
MboII	GAAGA	1 cut(s)	97
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	2 cut(s)	187, 258
MnlI	CCTC	2 cut(s)	147, 152
MseI	TTAA	2 cut(s)	200, 326
MslI	CAYNNNNRTG	1 cut(s)	134
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	222
NciI	CCSGG	1 cut(s)	205
NdeII	GATC	1 cut(s)	288
NlaIII	CATG	5 cut(s)	49, 215, 220, 249, 304
NlaIV	GGNNCC	2 cut(s)	33, 183
NmuCI	GTSAC	1 cut(s)	15
NspI	RCATGY	1 cut(s)	220
PaeI	GCATGC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	43
PpuMI	RGGWCCY	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	269
Psp5II	RGGWCCY	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	33, 183
PspPI	GGNCC	3 cut(s)	32, 181, 223
PspPPI	RGGWCCY	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	269
SaqAI	TTAA	2 cut(s)	200, 326
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	288
Sau96I	GGNCC	3 cut(s)	32, 181, 223
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	4 cut(s)	183, 200, 269, 284
SinI	GGWCC	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
SphI	GCATGC	1 cut(s)	220
Sse9I	AATT	2 cut(s)	187, 258
SsiI	CCGC	2 cut(s)	41, 82
SstI	GAGCTC	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	203
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	152
TasI	AATT	2 cut(s)	187, 258
TauI	GCSGC	1 cut(s)	44
Tru1I	TTAA	2 cut(s)	200, 326
Tru9I	TTAA	2 cut(s)	200, 326
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	15
Tsp45I	GTSAC	1 cut(s)	15
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.