Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008603

Physical Location & Seq

Genomic Coordinates Reverse (-)

15069872 .. 15071829

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGTTGGATCTGGATTGACGATTCATCCGCCTCTAAAGCCGGTGCTGATCTCACCGATAAACCGCTCGGAGATTCTGCCGCCGCCGCCGAAAATTGCTCCACGACCACGGTGGTAAGATCTCAGTGCAAGACGGAGGAGGTCGAGCCTGGAAAGTTCGTCAGGAAATGCGACAAAACAGAAGAAATCCTCCGCCACTGTTTTGGGAAGCCCTCTGAAGTCGTTCAATCCAACACAGAGCACACAGAAGAGGATGTGACAGACCAGATGGTGGGAAGATCCGCTCTTCCGAATCAGTTTGAGGATAAAAACCCGCTAAACTTCCCGGGACTCCGCAGAGATGTAGACGCCATCGAACGCCATTTCTTGAGCGGAATGAAGAGTTTCTTTGATGCGGCTGAAGAGATGACAAGCAGCTTATTTGATATCATGGGAGACCATCACCCAAGCACCAGGAGAGGAGGGATACCCATTGAAAACCATCCCAAGGTAGAGGAGCACCGCAATGACGAAACTGCCCCTACACGACCACACTCCTCTGGCGAGATTGATCTCTCGGGCTTGGCCAAGGACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.24

Weight (kDa)

4.94

Isoelectric Point (pI)

54.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35900 AT2G35900 AT2G35900
fragaria_vesca	FvH4_6g20830
malus_domestica	MD12G1044300.v1.1 MD14G1043200.v1.1
prunus_persica	Prupe.7G090900_v2.0.a1
pyrus_communis	pycom12g03810 pycom14g03670
rosa_chinensis	RchiOBHm_Chr3g0477081 RchiOBHm_Chr3g0477171
rosa_laevigata	RLG00000023740
rosa_multiflora	Rmu_sc0000288.1_g000001 Rmu_sc0000932.1_g000002
rosa_roxburghii	Rroxscaffold_6G00404360 Rroxscaffold_6G00404860
rosa_rugosa	Rorug03G0158500
rosa_samantha	Rh3AG208800 Rh3BG242000 Rh3BG242400 Rh3CG236500 Rh3DG235300
rosa_wichuraiana	Rw3G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccBSI	CCGCTC	3 cut(s)	67, 284, 372
AccI	GTMKAC	1 cut(s)	345
AclWI	GGATC	2 cut(s)	17, 273
AcoI	YGGCCR	1 cut(s)	564
AcuI	CTGAAG	2 cut(s)	237, 420
AcyI	GRCGYC	1 cut(s)	348
AfiI	CCNNNNNNNGG	2 cut(s)	271, 487
AgsI	TTSAA	2 cut(s)	227, 476
AjnI	CCWGG	2 cut(s)	148, 452
AluBI	AGCT	1 cut(s)	417
AluI	AGCT	1 cut(s)	417
Alw21I	GWGCWC	2 cut(s)	243, 501
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	2 cut(s)	17, 273
Ama87I	CYCGRG	2 cut(s)	325, 556
AoxI	GGCC	1 cut(s)	564
ApeKI	GCWGC	1 cut(s)	414
Asp700I	GAANNNNTTC	2 cut(s)	222, 383
AsuC2I	CCSGG	2 cut(s)	326, 327
AsuHPI	GGTGA	2 cut(s)	46, 434
AvaI	CYCGRG	2 cut(s)	325, 556
BalI	TGGCCA	1 cut(s)	566
Bbv12I	GWGCWC	2 cut(s)	243, 501
BbvI	GCAGC	1 cut(s)	426
BccI	CCATC	4 cut(s)	262, 359, 447, 489
BciT130I	CCWGG	2 cut(s)	150, 454
BciVI	GTATCC	1 cut(s)	459
BcnI	CCSGG	2 cut(s)	326, 327
BcoDI	GTCTC	1 cut(s)	429
BfuI	GTATCC	1 cut(s)	459
BglII	AGATCT	1 cut(s)	119
BisI	GCNGC	5 cut(s)	81, 84, 87, 396, 415
BlsI	GCNGC	5 cut(s)	82, 85, 88, 397, 416
Bme1390I	CCNGG	4 cut(s)	150, 326, 327, 454
BmeT110I	CYCGRG	2 cut(s)	325, 556
BmrFI	CCNGG	4 cut(s)	150, 326, 327, 454
BmsI	GCATC	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	388
BpuMI	CCSGG	2 cut(s)	326, 327
BsaHI	GRCGYC	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	429
BsaJI	CCNNGG	4 cut(s)	108, 325, 486, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 487
Bse118I	RCCGGY	1 cut(s)	41
Bse3DI	GCAATG	1 cut(s)	511
BseBI	CCWGG	2 cut(s)	150, 454
BseDI	CCNNGG	4 cut(s)	108, 325, 486, 567
BseGI	GGATG	3 cut(s)	26, 259, 481
BseLI	CCNNNNNNNGG	2 cut(s)	271, 487
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	1 cut(s)	137
BseRI	GAGGAG	4 cut(s)	152, 474, 509, 526
BseXI	GCAGC	1 cut(s)	426
BshFI	GGCC	1 cut(s)	566
BsiHKAI	GWGCWC	2 cut(s)	243, 501
BsiHKCI	CYCGRG	2 cut(s)	325, 556
BsiSI	CCGG	2 cut(s)	42, 326
BslFI	GGGAC	1 cut(s)	342
BslI	CCNNNNNNNGG	2 cut(s)	271, 487
BsmAI	GTCTC	1 cut(s)	429
BsmFI	GGGAC	1 cut(s)	342
BsnI	GGCC	1 cut(s)	566
Bso31I	GGTCTC	1 cut(s)	429
BsoBI	CYCGRG	2 cut(s)	325, 556
Bsp1286I	GDGCHC	2 cut(s)	243, 501
Bsp143I	GATC	5 cut(s)	9, 49, 119, 278, 550
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	1 cut(s)	136
BspPI	GGATC	2 cut(s)	17, 273
BspQI	GCTCTTC	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	429
BsrBI	CCGCTC	3 cut(s)	67, 284, 372
BsrDI	GCAATG	1 cut(s)	511
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	4 cut(s)	108, 325, 486, 567
BssMI	GATC	5 cut(s)	9, 49, 119, 278, 550
BssNI	GRCGYC	1 cut(s)	348
BssT1I	CCWWGG	2 cut(s)	486, 567
Bst2UI	CCWGG	2 cut(s)	150, 454
Bst4CI	ACNGT	2 cut(s)	112, 200
Bst6I	CTCTTC	4 cut(s)	243, 291, 374, 396
BstACI	GRCGYC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	3 cut(s)	26, 259, 481
BstKTI	GATC	5 cut(s)	12, 52, 122, 281, 553
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	5 cut(s)	9, 49, 119, 278, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 86
BstNI	CCWGG	2 cut(s)	150, 454
BstSCI	CCNGG	4 cut(s)	148, 324, 325, 452
BstV1I	GCAGC	1 cut(s)	426
BstX2I	RGATCY	3 cut(s)	9, 119, 278
BstXI	CCANNNNNNTGG	1 cut(s)	203
BstYI	RGATCY	3 cut(s)	9, 119, 278
BsuI	GTATCC	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	566
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	3 cut(s)	26, 259, 481
BtsIMutI	CAGTG	2 cut(s)	131, 196
Cfr10I	RCCGGY	1 cut(s)	41
Cfr9I	CCCGGG	1 cut(s)	325
CseI	GACGC	1 cut(s)	356
CviAII	CATG	1 cut(s)	430
CviJI	RGCY	7 cut(s)	41, 148, 211, 398, 417, 561, 566
CviKI_1	RGCY	7 cut(s)	41, 148, 211, 398, 417, 561, 566
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	5 cut(s)	11, 51, 121, 280, 552
DpnII	GATC	5 cut(s)	9, 49, 119, 278, 550
EaeI	YGGCCR	1 cut(s)	564
Eam1104I	CTCTTC	4 cut(s)	243, 291, 374, 396
EarI	CTCTTC	4 cut(s)	243, 291, 374, 396
EciI	GGCGGA	2 cut(s)	19, 182
Eco130I	CCWWGG	2 cut(s)	486, 567
Eco31I	GGTCTC	1 cut(s)	429
Eco32I	GATATC	1 cut(s)	427
Eco57I	CTGAAG	2 cut(s)	237, 420
Eco88I	CYCGRG	2 cut(s)	325, 556
EcoRII	CCWGG	2 cut(s)	148, 452
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	2 cut(s)	486, 567
ErhI	CCWWGG	2 cut(s)	486, 567
FaeI	CATG	1 cut(s)	433
FaiI	YATR	1 cut(s)	431
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	1 cut(s)	429
FauI	CCCGC	1 cut(s)	321
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	5 cut(s)	81, 84, 87, 396, 415
FokI	GGATG	3 cut(s)	13, 266, 468
Fsp4HI	GCNGC	5 cut(s)	81, 84, 87, 396, 415
GluI	GCNGC	5 cut(s)	81, 84, 87, 396, 415
HaeIII	GGCC	1 cut(s)	566
HapII	CCGG	2 cut(s)	42, 326
HgaI	GACGC	1 cut(s)	356
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	433
HinfI	GANTC	4 cut(s)	23, 74, 292, 330
HpaII	CCGG	2 cut(s)	42, 326
HphI	GGTGA	2 cut(s)	46, 434
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	3 cut(s)	71, 217, 291
Hpy188III	TCNNGA	3 cut(s)	13, 163, 367
Hpy8I	GTNNAC	1 cut(s)	346
HpyCH4III	ACNGT	2 cut(s)	112, 200
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 86
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	573
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	1 cut(s)	433
Kzo9I	GATC	5 cut(s)	9, 49, 119, 278, 550
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	104, 496
LpnPI	CCDG	9 cut(s)	55, 135, 148, 162, 278, 339, 439, 466, 525
Lsp1109I	GCAGC	1 cut(s)	426
LweI	GCATC	1 cut(s)	382
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	5 cut(s)	11, 51, 121, 280, 552
MbiI	CCGCTC	3 cut(s)	67, 284, 372
MboI	GATC	5 cut(s)	9, 49, 119, 278, 550
MboII	GAAGA	6 cut(s)	194, 260, 278, 288, 391, 413
MflI	RGATCY	3 cut(s)	9, 119, 278
MhlI	GDGCHC	2 cut(s)	243, 501
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	1 cut(s)	94
MluNI	TGGCCA	1 cut(s)	566
MlyI	GAGTC	1 cut(s)	324
MmeI	TCCRAC	1 cut(s)	255
Mox20I	TGGCCA	1 cut(s)	566
MroXI	GAANNNNTTC	2 cut(s)	222, 383
MscI	TGGCCA	1 cut(s)	566
MslI	CAYNNNNRTG	1 cut(s)	504
Msp20I	TGGCCA	1 cut(s)	566
MspI	CCGG	2 cut(s)	42, 326
MspR9I	CCNGG	4 cut(s)	150, 326, 327, 454
MvaI	CCWGG	2 cut(s)	150, 454
MwoI	GCNNNNNNNGC	2 cut(s)	38, 86
NciI	CCSGG	2 cut(s)	326, 327
NdeII	GATC	5 cut(s)	9, 49, 119, 278, 550
NlaIII	CATG	1 cut(s)	433
NmuCI	GTSAC	1 cut(s)	256
PciSI	GCTCTTC	1 cut(s)	291
PdmI	GAANNNNTTC	2 cut(s)	222, 383
PfeI	GAWTC	3 cut(s)	23, 74, 292
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	5 cut(s)	82, 85, 88, 397, 416
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	148, 452
PspGI	CCWGG	2 cut(s)	148, 452
PsuI	RGATCY	3 cut(s)	9, 119, 278
RseI	CAYNNNNRTG	1 cut(s)	504
SapI	GCTCTTC	1 cut(s)	291
SatI	GCNGC	5 cut(s)	81, 84, 87, 396, 415
Sau3AI	GATC	5 cut(s)	9, 49, 119, 278, 550
SchI	GAGTC	1 cut(s)	324
ScrFI	CCNGG	4 cut(s)	150, 326, 327, 454
SduI	GDGCHC	2 cut(s)	243, 501
SetI	ASST	4 cut(s)	144, 419, 492, 576
SfaNI	GCATC	1 cut(s)	382
SmaI	CCCGGG	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	1 cut(s)	94
StyD4I	CCNGG	4 cut(s)	148, 324, 325, 452
StyI	CCWWGG	2 cut(s)	486, 567
TaaI	ACNGT	2 cut(s)	112, 200
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	2 cut(s)	144, 354
TasI	AATT	1 cut(s)	94
TauI	GCSGC	4 cut(s)	83, 86, 89, 398
TfiI	GAWTC	3 cut(s)	23, 74, 292
TscAI	CASTG	2 cut(s)	131, 203
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	414
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	15, 392
TspGWI	ACGGA	1 cut(s)	149
TspMI	CCCGGG	1 cut(s)	325
TspRI	CASTG	2 cut(s)	131, 203
Van91I	CCANNNNNTGG	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmaI	CCCGGG	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	345
XmnI	GAANNNNTTC	2 cut(s)	222, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.