Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008603

Physical Location & Seq

Genomic Coordinates Forward (+)

4955328 .. 4958195

Gene Structure 2868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1044300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGATGGGTGTGGAGGGACGACGAAGAAGGCGACAGCAATTCTTCGGCGATTGACATAAACCCTAGATCGGATGGGGAGCGATGCTCGACGAGAAAGGTGGTGAAGACGCAGTGCAAGACTGAGGAGGTGGAGCCTGGAAAGTTCATGAGGAAGTGCGAGAAGACTGAGCAGCTTCTCAGGGACTGCGCCGGCCGGCCTGTTGAAGTGGTGCAATCCAACAAAGAGTGCACAGAAGATAACGTCACCGATGAGATGCTAAAACGGTCTGTCACCTTTGGGTCATCACAGCATGGAGCGTTTGACTTCCCAGGGTTACAAAGTGACATTGAAGACATTGAACGCAACTTTATGGGTGGCCTCAACCGTTTCTTTGAAGCAGCGGAGGAGTTGAAGAGTGGCTTCTTGAGTGCTTTTGGGACTCCACACATCTTTGATGAGGGACCTTCCTGCCCACTACCATCTAGGAGGCGAGAGGTGCCCATTGAAGGTCATCGTCAGCAGGAAGCTTTTCCTAAAGCAAGTGACGGCGATTCAGGACAAGTTGATCTCTCTGGGTTGGTGAGAGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.35

Weight (kDa)

4.78

Isoelectric Point (pI)

70.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35900 AT2G35900 AT2G35900
fragaria_vesca	FvH4_6g20830
malus_domestica	MD12G1044300.v1.1 MD14G1043200.v1.1
prunus_persica	Prupe.7G090900_v2.0.a1
pyrus_communis	pycom12g03810 pycom14g03670
rosa_chinensis	RchiOBHm_Chr3g0477081 RchiOBHm_Chr3g0477171
rosa_laevigata	RLG00000023740
rosa_multiflora	Rmu_sc0000288.1_g000001 Rmu_sc0000932.1_g000002
rosa_roxburghii	Rroxscaffold_6G00404360 Rroxscaffold_6G00404860
rosa_rugosa	Rorug03G0158500
rosa_samantha	Rh3AG208800 Rh3BG242000 Rh3BG242400 Rh3CG236500 Rh3DG235300
rosa_wichuraiana	Rw3G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	478
AciI	CCGC	1 cut(s)	383
AcoI	YGGCCR	1 cut(s)	193
AfiI	CCNNNNNNNGG	2 cut(s)	70, 488
AgsI	TTSAA	6 cut(s)	206, 332, 341, 377, 394, 488
AjnI	CCWGG	2 cut(s)	136, 310
AluBI	AGCT	2 cut(s)	175, 509
AluI	AGCT	2 cut(s)	175, 509
Alw21I	GWGCWC	1 cut(s)	233
Alw44I	GTGCAC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	186
AoxI	GGCC	3 cut(s)	193, 197, 358
ApaLI	GTGCAC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	172, 380
Asp700I	GAANNNNTTC	1 cut(s)	510
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	443
AsuHPI	GGTGA	4 cut(s)	115, 238, 265, 574
AvaII	GGWCC	1 cut(s)	443
BaeGI	GKGCMC	2 cut(s)	233, 483
BanI	GGYRCC	1 cut(s)	478
BbsI	GAAGAC	3 cut(s)	113, 170, 339
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	2 cut(s)	184, 392
BccI	CCATC	2 cut(s)	68, 469
BceAI	ACGGC	1 cut(s)	544
BciT130I	CCWGG	2 cut(s)	138, 312
BfaI	CTAG	2 cut(s)	66, 465
BisI	GCNGC	2 cut(s)	173, 381
BlsI	GCNGC	2 cut(s)	174, 382
Bme1390I	CCNGG	2 cut(s)	138, 312
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	3 cut(s)	135, 444, 480
BmrFI	CCNGG	2 cut(s)	138, 312
BmsI	GCATC	2 cut(s)	74, 246
BpiI	GAAGAC	3 cut(s)	113, 170, 339
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
BpuEI	CTTGAG	1 cut(s)	427
BsaJI	CCNNGG	2 cut(s)	310, 311
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 488
Bse118I	RCCGGY	2 cut(s)	191, 195
BseBI	CCWGG	2 cut(s)	138, 312
BseDI	CCNNGG	2 cut(s)	310, 311
BseGI	GGATG	2 cut(s)	11, 79
BseLI	CCNNNNNNNGG	2 cut(s)	70, 488
BseMII	CTCAG	3 cut(s)	114, 159, 193
BseRI	GAGGAG	2 cut(s)	140, 401
BseSI	GKGCMC	2 cut(s)	233, 483
BseX3I	CGGCCG	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	184, 392
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	3 cut(s)	195, 199, 360
BshNI	GGYRCC	1 cut(s)	478
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	233
BsiSI	CCGG	2 cut(s)	192, 196
BslFI	GGGAC	4 cut(s)	32, 197, 433, 456
BslI	CCNNNNNNNGG	2 cut(s)	70, 488
BsmFI	GGGAC	4 cut(s)	32, 197, 433, 456
BsnI	GGCC	3 cut(s)	195, 199, 360
Bsp1286I	GDGCHC	2 cut(s)	233, 483
Bsp143I	GATC	2 cut(s)	68, 547
BspACI	CCGC	1 cut(s)	383
BspANI	GGCC	3 cut(s)	195, 199, 360
BspCNI	CTCAG	3 cut(s)	115, 160, 192
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	3 cut(s)	135, 444, 480
BspT107I	GGYRCC	1 cut(s)	478
BsrFI	RCCGGY	2 cut(s)	191, 195
BssAI	RCCGGY	2 cut(s)	191, 195
BssECI	CCNNGG	2 cut(s)	310, 311
BssMI	GATC	2 cut(s)	68, 547
Bst2UI	CCWGG	2 cut(s)	138, 312
Bst4CI	ACNGT	2 cut(s)	267, 368
Bst6I	CTCTTC	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	193, 197
BstDEI	CTNAG	3 cut(s)	123, 168, 179
BstF5I	GGATG	2 cut(s)	11, 79
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	2 cut(s)	71, 550
BstMBI	GATC	2 cut(s)	68, 547
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	478
BstNI	CCWGG	2 cut(s)	138, 312
BstSCI	CCNGG	2 cut(s)	136, 310
BstSLI	GKGCMC	2 cut(s)	233, 483
BstV1I	GCAGC	2 cut(s)	184, 392
BstV2I	GAAGAC	3 cut(s)	113, 170, 339
BstZI	CGGCCG	1 cut(s)	193
BsuRI	GGCC	3 cut(s)	195, 199, 360
BtgZI	GCGATG	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	11, 79
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	193, 197
CaiI	CAGNNNCTG	1 cut(s)	186
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	1 cut(s)	191
Cfr10I	RCCGGY	2 cut(s)	191, 195
Cfr13I	GGNCC	1 cut(s)	443
CseI	GACGC	1 cut(s)	118
CviAII	CATG	2 cut(s)	148, 293
CviJI	RGCY	7 cut(s)	136, 175, 195, 199, 360, 402, 509
CviKI_1	RGCY	7 cut(s)	136, 175, 195, 199, 360, 402, 509
DdeI	CTNAG	3 cut(s)	123, 168, 179
DpnI	GATC	2 cut(s)	70, 549
DpnII	GATC	2 cut(s)	68, 547
EaeI	YGGCCR	1 cut(s)	193
EagI	CGGCCG	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
EclXI	CGGCCG	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	443
Eco52I	CGGCCG	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	136, 310
FaeI	CATG	2 cut(s)	151, 296
FaiI	YATR	4 cut(s)	59, 149, 294, 353
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	4 cut(s)	32, 197, 433, 456
FatI	CATG	2 cut(s)	147, 292
Fnu4HI	GCNGC	2 cut(s)	173, 381
FokI	GGATG	2 cut(s)	18, 86
FseI	GGCCGGCC	1 cut(s)	199
Fsp4HI	GCNGC	2 cut(s)	173, 381
FspBI	CTAG	2 cut(s)	66, 465
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	2 cut(s)	173, 381
HaeIII	GGCC	3 cut(s)	195, 199, 360
HapII	CCGG	2 cut(s)	192, 196
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	151, 296
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	507
HinfI	GANTC	2 cut(s)	421, 533
HpaII	CCGG	2 cut(s)	192, 196
HphI	GGTGA	4 cut(s)	115, 238, 265, 574
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	3 cut(s)	148, 406, 537
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	2 cut(s)	26, 94
HpyAV	CCTTC	3 cut(s)	23, 456, 482
HpyCH4III	ACNGT	2 cut(s)	267, 368
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	3 cut(s)	117, 214, 231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	478
HpyF3I	CTNAG	3 cut(s)	123, 168, 179
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	151, 296
HspAI	GCGC	1 cut(s)	189
KroI	GCCGGC	2 cut(s)	191, 195
KroNI	GCCGGC	2 cut(s)	193, 197
Kzo9I	GATC	2 cut(s)	68, 547
LmnI	GCTCC	3 cut(s)	79, 133, 296
Lsp1109I	GCAGC	2 cut(s)	184, 392
LweI	GCATC	2 cut(s)	74, 246
MaeI	CTAG	2 cut(s)	66, 465
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	5 cut(s)	244, 271, 315, 323, 524
MalI	GATC	2 cut(s)	70, 549
MboI	GATC	2 cut(s)	68, 547
MboII	GAAGA	7 cut(s)	36, 38, 118, 175, 248, 344, 406
MhlI	GDGCHC	2 cut(s)	233, 483
MluCI	AATT	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	9 cut(s)	9, 118, 121, 144, 371, 379, 433, 462, 469
MroNI	GCCGGC	2 cut(s)	191, 195
MroXI	GAANNNNTTC	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	2 cut(s)	192, 196
MspR9I	CCNGG	2 cut(s)	138, 312
MvaI	CCWGG	2 cut(s)	138, 312
MwoI	GCNNNNNNNGC	1 cut(s)	478
NaeI	GCCGGC	2 cut(s)	193, 197
NdeII	GATC	2 cut(s)	68, 547
NgoMIV	GCCGGC	2 cut(s)	191, 195
NlaIII	CATG	2 cut(s)	151, 296
NlaIV	GGNNCC	3 cut(s)	135, 444, 480
NmuCI	GTSAC	4 cut(s)	244, 271, 323, 524
PagI	TCATGA	1 cut(s)	147
PasI	CCCWGGG	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PdiI	GCCGGC	2 cut(s)	193, 197
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	533
PkrI	GCNGC	2 cut(s)	174, 382
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PpuMI	RGGWCCY	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	443
Psp6I	CCWGG	2 cut(s)	136, 310
PspGI	CCWGG	2 cut(s)	136, 310
PspN4I	GGNNCC	3 cut(s)	135, 444, 480
PspPI	GGNCC	1 cut(s)	443
PspPPI	RGGWCCY	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	186
RigI	GGCCGGCC	1 cut(s)	199
SatI	GCNGC	2 cut(s)	173, 381
Sau3AI	GATC	2 cut(s)	68, 547
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	2 cut(s)	138, 312
SduI	GDGCHC	2 cut(s)	233, 483
SetI	ASST	9 cut(s)	102, 132, 177, 246, 278, 448, 480, 493, 511
SfaNI	GCATC	2 cut(s)	74, 246
SinI	GGWCC	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	1 cut(s)	383
SspMI	CTAG	2 cut(s)	66, 465
StyD4I	CCNGG	2 cut(s)	136, 310
TaaI	ACNGT	2 cut(s)	267, 368
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	89
TasI	AATT	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	533
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	4 cut(s)	244, 271, 323, 524
TseI	GCWGC	2 cut(s)	172, 380
Tsp45I	GTSAC	4 cut(s)	244, 271, 323, 524
TspDTI	ATGAA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	119
VneI	GTGCAC	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	2 cut(s)	66, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.