Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0008603

Physical Location & Seq

Genomic Coordinates Forward (+)

22486552 .. 22489463

Gene Structure 2912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG235300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTTTCTCAAACCCAAACACCGAGTTCCAAAACTGGCAGAGAGAAAGAGAGAGAGAGAGGGTTCCGGAATATACAGGAAGCCACAAAACCAGAGAAGAGGGACTAGTTCAATTCAAGCGAACCAAAACCAAGAAATGGGTTGGGTATGGAGGGACGACGACGACGAAGGCGGCGACGTTAATCCGTCTGCGGCTGACATCATCCCCCGATCGGACGGCGACCGATGCTCCACGAGAAAGATGGTGAGGACGCAGTGCAAGACGGAGGAGGTGGAGCCTGGAAAGTTCATCAGAAAGTGCGAGAAGACCGAGGAGCTTCTCCGCGACTGCGTTGGCCGGCCTGTTGAAGTGGTACAATCCAACAAAGAGTACACCGAAGATGATGTCACGGACCAGGTGATGAAAGGGTCTGTGCCCTTTGGATCATCAGACAATGGAGCATTTAACTTCCCTGGACTACAGAGTGATATTGATGAAATTGAACGCAACTTCTTAGGTGGGCTCAGCCGATTCTTTGAAGCTGCTGAGGATATGAAGAATGGATTCTTCAGTTCATTTGGCATTCCACACATCTTTGATGAGGGACCCTCTACTACACTACCATCTCCGAGGAGAGAGATACCTATTGACAGCCATCGTCAGCGGGAAGCTTTTCCCAAACAAAATGGCACAAAATCTGGGGAGGTTGATCTTTCTGGGTTGGCAAGAGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

26.89

Weight (kDa)

5.46

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35900 AT2G35900 AT2G35900
fragaria_vesca	FvH4_6g20830
malus_domestica	MD12G1044300.v1.1 MD14G1043200.v1.1
prunus_persica	Prupe.7G090900_v2.0.a1
pyrus_communis	pycom12g03810 pycom14g03670
rosa_chinensis	RchiOBHm_Chr3g0477081 RchiOBHm_Chr3g0477171
rosa_laevigata	RLG00000023740
rosa_multiflora	Rmu_sc0000288.1_g000001 Rmu_sc0000932.1_g000002
rosa_roxburghii	Rroxscaffold_6G00404360 Rroxscaffold_6G00404860
rosa_rugosa	Rorug03G0158500
rosa_samantha	Rh3AG208800 Rh3BG242000 Rh3BG242400 Rh3CG236500 Rh3DG235300
rosa_wichuraiana	Rw3G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccII	CGCG	1 cut(s)	324
AccIII	TCCGGA	1 cut(s)	65
AciI	CCGC	4 cut(s)	171, 191, 322, 643
AclWI	GGATC	1 cut(s)	430
AcoI	YGGCCR	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	532
AfaI	GTAC	2 cut(s)	354, 371
AfiI	CCNNNNNNNGG	2 cut(s)	136, 211
AgsI	TTSAA	5 cut(s)	111, 116, 347, 482, 518
AhlI	ACTAGT	1 cut(s)	104
AjnI	CCWGG	3 cut(s)	277, 393, 451
AluBI	AGCT	3 cut(s)	316, 521, 650
AluI	AGCT	3 cut(s)	316, 521, 650
AlwI	GGATC	1 cut(s)	430
Aor13HI	TCCGGA	1 cut(s)	65
AoxI	GGCC	2 cut(s)	334, 338
ApeKI	GCWGC	1 cut(s)	521
ArsI	GACNNNNNNTTYG	2 cut(s)	369, 401
Asp700I	GAANNNNTTC	2 cut(s)	542, 651
AspS9I	GGNCC	2 cut(s)	391, 584
AsuHPI	GGTGA	2 cut(s)	256, 409
AvaII	GGWCC	2 cut(s)	391, 584
BaeGI	GKGCMC	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	504
BauI	CACGAG	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	311
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	3 cut(s)	235, 610, 642
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	3 cut(s)	279, 395, 453
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	458
BisI	GCNGC	3 cut(s)	172, 192, 522
BlpI	GCTNAGC	1 cut(s)	503
BlsI	GCNGC	3 cut(s)	173, 193, 523
Bme1390I	CCNGG	3 cut(s)	279, 395, 453
Bme18I	GGWCC	2 cut(s)	391, 584
BmgT120I	GGNCC	2 cut(s)	391, 584
BmiI	GGNNCC	4 cut(s)	64, 276, 585, 586
BmrFI	CCNGG	3 cut(s)	279, 395, 453
BmsI	GCATC	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	311
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
Bpu10I	CCTNAGC	1 cut(s)	525
Bpu1102I	GCTNAGC	1 cut(s)	503
BsaJI	CCNNGG	3 cut(s)	309, 451, 608
BsaWI	WCCGGW	1 cut(s)	65
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 211
Bse118I	RCCGGY	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	39
BseAI	TCCGGA	1 cut(s)	65
BseBI	CCWGG	3 cut(s)	279, 395, 453
BseDI	CCNNGG	3 cut(s)	309, 451, 608
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	2 cut(s)	136, 211
BseMII	CTCAG	2 cut(s)	516, 517
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	3 cut(s)	281, 326, 625
BseSI	GKGCMC	1 cut(s)	417
BseXI	GCAGC	1 cut(s)	508
Bsh1236I	CGCG	1 cut(s)	324
Bsh1285I	CGRYCG	2 cut(s)	212, 223
BshFI	GGCC	2 cut(s)	336, 340
BsiEI	CGRYCG	2 cut(s)	212, 223
BsiSI	CCGG	2 cut(s)	66, 337
BslFI	GGGAC	3 cut(s)	115, 167, 597
BslI	CCNNNNNNNGG	2 cut(s)	136, 211
BsmFI	GGGAC	3 cut(s)	115, 167, 597
BsmI	GAATGC	1 cut(s)	561
BsnI	GGCC	2 cut(s)	336, 340
Bsp1286I	GDGCHC	2 cut(s)	417, 504
Bsp13I	TCCGGA	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	209, 422, 688
Bsp1720I	GCTNAGC	1 cut(s)	503
BspACI	CCGC	4 cut(s)	171, 191, 322, 643
BspANI	GGCC	2 cut(s)	336, 340
BspCNI	CTCAG	2 cut(s)	516, 517
BspEI	TCCGGA	1 cut(s)	65
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	4 cut(s)	64, 276, 585, 586
BspPI	GGATC	1 cut(s)	430
BsrFI	RCCGGY	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	39
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	3 cut(s)	309, 451, 608
BssMI	GATC	3 cut(s)	209, 422, 688
BssSI	CACGAG	1 cut(s)	232
Bst2BI	CACGAG	1 cut(s)	232
Bst2UI	CCWGG	3 cut(s)	279, 395, 453
Bst6I	CTCTTC	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	3 cut(s)	493, 503, 525
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	324
BstKTI	GATC	3 cut(s)	212, 425, 691
BstMBI	GATC	3 cut(s)	209, 422, 688
BstMCI	CGRYCG	2 cut(s)	212, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	3 cut(s)	279, 395, 453
BstSCI	CCNGG	3 cut(s)	277, 393, 451
BstSFI	CTRYAG	1 cut(s)	458
BstSLI	GKGCMC	1 cut(s)	417
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	1 cut(s)	508
BstV2I	GAAGAC	1 cut(s)	311
BsuRI	GGCC	2 cut(s)	336, 340
BtsCI	GGATG	1 cut(s)	201
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	2 cut(s)	391, 584
CseI	GACGC	1 cut(s)	259
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	353, 370
CviQI	GTAC	2 cut(s)	353, 370
DdeI	CTNAG	3 cut(s)	493, 503, 525
DpnI	GATC	3 cut(s)	211, 424, 690
DpnII	GATC	3 cut(s)	209, 422, 688
EaeI	YGGCCR	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	504
Eco47I	GGWCC	2 cut(s)	391, 584
Eco57I	CTGAAG	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRII	CCWGG	3 cut(s)	277, 393, 451
EcoT38I	GRGCYC	1 cut(s)	504
FaiI	YATR	3 cut(s)	73, 148, 533
FaqI	GGGAC	3 cut(s)	115, 167, 597
FauI	CCCGC	1 cut(s)	636
Fnu4HI	GCNGC	3 cut(s)	172, 192, 522
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	504
FseI	GGCCGGCC	1 cut(s)	340
Fsp4HI	GCNGC	3 cut(s)	172, 192, 522
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	3 cut(s)	172, 192, 522
HaeIII	GGCC	2 cut(s)	336, 340
HapII	CCGG	2 cut(s)	66, 337
HgaI	GACGC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	648
HinfI	GANTC	2 cut(s)	510, 543
HpaII	CCGG	2 cut(s)	66, 337
HphI	GGTGA	2 cut(s)	256, 409
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	4 cut(s)	214, 293, 430, 609
Hpy188III	TCNNGA	1 cut(s)	66
Hpy8I	GTNNAC	1 cut(s)	372
Hpy99I	CGWCG	4 cut(s)	161, 164, 167, 179
HpyAV	CCTTC	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	3 cut(s)	493, 503, 525
HpySE526I	ACGT	1 cut(s)	177
KflI	GGGWCCC	1 cut(s)	584
Kpn2I	TCCGGA	1 cut(s)	65
KroI	GCCGGC	1 cut(s)	336
KroNI	GCCGGC	1 cut(s)	338
Kzo9I	GATC	3 cut(s)	209, 422, 688
LmnI	GCTCC	4 cut(s)	233, 274, 313, 437
Lsp1109I	GCAGC	1 cut(s)	508
LweI	GCATC	1 cut(s)	215
MabI	ACCWGGT	1 cut(s)	393
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	3 cut(s)	211, 424, 690
MboI	GATC	3 cut(s)	209, 422, 688
MboII	GAAGA	5 cut(s)	108, 316, 389, 538, 547
MhlI	GDGCHC	2 cut(s)	417, 504
MluCI	AATT	2 cut(s)	111, 477
MmeI	TCCRAC	1 cut(s)	384
MroI	TCCGGA	1 cut(s)	65
MroNI	GCCGGC	1 cut(s)	336
MroXI	GAANNNNTTC	2 cut(s)	542, 651
MseI	TTAA	2 cut(s)	180, 444
MspA1I	CMGCKG	1 cut(s)	643
MspI	CCGG	2 cut(s)	66, 337
MspR9I	CCNGG	3 cut(s)	279, 395, 453
Mva1269I	GAATGC	1 cut(s)	561
MvaI	CCWGG	3 cut(s)	279, 395, 453
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	225
NaeI	GCCGGC	1 cut(s)	338
NdeII	GATC	3 cut(s)	209, 422, 688
NgoMIV	GCCGGC	1 cut(s)	336
NlaIV	GGNNCC	4 cut(s)	64, 276, 585, 586
NmuCI	GTSAC	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	2 cut(s)	162, 171
PctI	GAATGC	1 cut(s)	561
PdiI	GCCGGC	1 cut(s)	338
PdmI	GAANNNNTTC	2 cut(s)	542, 651
PfeI	GAWTC	2 cut(s)	510, 543
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	173, 193, 523
Ple19I	CGATCG	1 cut(s)	212
PpuMI	RGGWCCY	1 cut(s)	584
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	3 cut(s)	277, 393, 451
PspGI	CCWGG	3 cut(s)	277, 393, 451
PspN4I	GGNNCC	4 cut(s)	64, 276, 585, 586
PspPI	GGNCC	2 cut(s)	391, 584
PspPPI	RGGWCCY	1 cut(s)	584
PvuI	CGATCG	1 cut(s)	212
RigI	GGCCGGCC	1 cut(s)	340
RsaI	GTAC	2 cut(s)	354, 371
RsaNI	GTAC	2 cut(s)	353, 370
SaqAI	TTAA	2 cut(s)	180, 444
SatI	GCNGC	3 cut(s)	172, 192, 522
Sau3AI	GATC	3 cut(s)	209, 422, 688
Sau96I	GGNCC	2 cut(s)	391, 584
ScrFI	CCNGG	3 cut(s)	279, 395, 453
SduI	GDGCHC	2 cut(s)	417, 504
SetI	ASST	9 cut(s)	180, 273, 318, 399, 499, 523, 625, 652, 687
SexAI	ACCWGGT	1 cut(s)	393
SfaNI	GCATC	1 cut(s)	215
SfcI	CTRYAG	1 cut(s)	458
SinI	GGWCC	2 cut(s)	391, 584
SpeI	ACTAGT	1 cut(s)	104
Sse9I	AATT	2 cut(s)	111, 477
SsiI	CCGC	4 cut(s)	171, 191, 322, 643
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	3 cut(s)	277, 393, 451
TaiI	ACGT	1 cut(s)	180
TaqII	GACCGA	2 cut(s)	237, 323
TasI	AATT	2 cut(s)	111, 477
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	2 cut(s)	174, 194
TfiI	GAWTC	2 cut(s)	510, 543
Tru1I	TTAA	2 cut(s)	180, 444
Tru9I	TTAA	2 cut(s)	180, 444
TscAI	CASTG	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	521
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	5 cut(s)	277, 416, 489, 543, 548
TspGWI	ACGGA	3 cut(s)	174, 278, 404
TspRI	CASTG	1 cut(s)	260
Van91I	CCANNNNNTGG	1 cut(s)	136
VpaK11BI	GGWCC	2 cut(s)	391, 584
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmnI	GAANNNNTTC	2 cut(s)	542, 651
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.