Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008603

Physical Location & Seq

Genomic Coordinates Forward (+)

21462931 .. 21465551

Gene Structure 2621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G019040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGTTGGGTATGGAGGGACGACGACGACGACGAAGGCGGCGACGTTAATCCGTCTGCGGCTGACATCATCCCCCGATCGGACGGCGACCGATGCTCCACGAGAAAGATGGTGAGGACGCAGTGCAAGACGGAGGAGGTGGAGCCTGGAAAGTTCATCAGAAAGTGCGAGAAGACCGAGGAGCTTCTCCGCGACTGCGTTGGCCGGCCCGTTGAAGTGGTACAATCCAACAAAGAGTACACCGAAGATGATGTCACGGACCAGGTGATGAAAGGGTCTGTGTCCTTTGGATCATCAGATAATGGAGCATTTAACTTCCCTGGACTACAGAGTGATATTGATGAAATTGAACGCAACTTCTTAGGTGGGCTCAGCCGATTCTTTGAAGCTGCTGAGGATATGAAGAATGGATTCTTCAGTTCATTTGGCATTCCACACATCTTTGATGAGGGACCCTCTACTACACTACCATCTTCAAGGAGAGAGATACCTATTGACAGCCATCGTCAGCGGGAAGCTTTTCCCAAACAAAATGGCACAAAATCTGGGGAGGTTGATCTTTCTGGGTTGGCAAGAGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

21.65

Weight (kDa)

4.6

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35900 AT2G35900 AT2G35900
fragaria_vesca	FvH4_6g20830
malus_domestica	MD12G1044300.v1.1 MD14G1043200.v1.1
prunus_persica	Prupe.7G090900_v2.0.a1
pyrus_communis	pycom12g03810 pycom14g03670
rosa_chinensis	RchiOBHm_Chr3g0477081 RchiOBHm_Chr3g0477171
rosa_laevigata	RLG00000023740
rosa_multiflora	Rmu_sc0000288.1_g000001 Rmu_sc0000932.1_g000002
rosa_roxburghii	Rroxscaffold_6G00404360 Rroxscaffold_6G00404860
rosa_rugosa	Rorug03G0158500
rosa_samantha	Rh3AG208800 Rh3BG242000 Rh3BG242400 Rh3CG236500 Rh3DG235300
rosa_wichuraiana	Rw3G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	192
AciI	CCGC	4 cut(s)	39, 59, 190, 511
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	400
AfaI	GTAC	2 cut(s)	222, 239
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	4 cut(s)	215, 350, 386, 477
AjnI	CCWGG	3 cut(s)	145, 261, 319
AluBI	AGCT	3 cut(s)	184, 389, 518
AluI	AGCT	3 cut(s)	184, 389, 518
AlwI	GGATC	1 cut(s)	298
AoxI	GGCC	2 cut(s)	202, 206
ApeKI	GCWGC	1 cut(s)	389
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
Asp700I	GAANNNNTTC	2 cut(s)	410, 519
AspS9I	GGNCC	3 cut(s)	207, 259, 452
AsuHPI	GGTGA	2 cut(s)	124, 277
AvaII	GGWCC	2 cut(s)	259, 452
BanII	GRGCYC	1 cut(s)	372
BauI	CACGAG	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	179
BbvCI	CCTCAGC	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	3 cut(s)	103, 478, 510
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	3 cut(s)	147, 263, 321
BfmI	CTRYAG	1 cut(s)	326
BisI	GCNGC	3 cut(s)	40, 60, 390
BlpI	GCTNAGC	1 cut(s)	371
BlsI	GCNGC	3 cut(s)	41, 61, 391
Bme1390I	CCNGG	3 cut(s)	147, 263, 321
Bme18I	GGWCC	2 cut(s)	259, 452
BmgT120I	GGNCC	3 cut(s)	207, 259, 452
BmiI	GGNNCC	3 cut(s)	144, 453, 454
BmrFI	CCNGG	3 cut(s)	147, 263, 321
BmsI	GCATC	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	179
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
Bpu10I	CCTNAGC	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	177, 319
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse118I	RCCGGY	1 cut(s)	204
BseBI	CCWGG	3 cut(s)	147, 263, 321
BseDI	CCNNGG	2 cut(s)	177, 319
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	384, 385
BseRI	GAGGAG	2 cut(s)	149, 194
BseXI	GCAGC	1 cut(s)	376
Bsh1236I	CGCG	1 cut(s)	192
Bsh1285I	CGRYCG	2 cut(s)	80, 91
BshFI	GGCC	2 cut(s)	204, 208
BsiEI	CGRYCG	2 cut(s)	80, 91
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	2 cut(s)	32, 465
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmFI	GGGAC	2 cut(s)	32, 465
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	2 cut(s)	204, 208
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	77, 290, 556
Bsp1720I	GCTNAGC	1 cut(s)	371
BspACI	CCGC	4 cut(s)	39, 59, 190, 511
BspANI	GGCC	2 cut(s)	204, 208
BspCNI	CTCAG	2 cut(s)	384, 385
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	3 cut(s)	144, 453, 454
BspPI	GGATC	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	177, 319
BssMI	GATC	3 cut(s)	77, 290, 556
BssSI	CACGAG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	100
Bst2UI	CCWGG	3 cut(s)	147, 263, 321
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	3 cut(s)	361, 371, 393
BstF5I	GGATG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	3 cut(s)	80, 293, 559
BstMBI	GATC	3 cut(s)	77, 290, 556
BstMCI	CGRYCG	2 cut(s)	80, 91
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNI	CCWGG	3 cut(s)	147, 263, 321
BstSCI	CCNGG	3 cut(s)	145, 261, 319
BstSFI	CTRYAG	1 cut(s)	326
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	376
BstV2I	GAAGAC	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	204, 208
BtsCI	GGATG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	204
Cfr13I	GGNCC	3 cut(s)	207, 259, 452
CseI	GACGC	1 cut(s)	127
CsiI	ACCWGGT	1 cut(s)	261
Csp6I	GTAC	2 cut(s)	221, 238
CviQI	GTAC	2 cut(s)	221, 238
DdeI	CTNAG	3 cut(s)	361, 371, 393
DpnI	GATC	3 cut(s)	79, 292, 558
DpnII	GATC	3 cut(s)	77, 290, 556
EaeI	YGGCCR	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	372
Eco47I	GGWCC	2 cut(s)	259, 452
Eco57I	CTGAAG	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRII	CCWGG	3 cut(s)	145, 261, 319
EcoT38I	GRGCYC	1 cut(s)	372
FaiI	YATR	2 cut(s)	13, 401
FaqI	GGGAC	2 cut(s)	32, 465
FauI	CCCGC	1 cut(s)	504
Fnu4HI	GCNGC	3 cut(s)	40, 60, 390
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	1 cut(s)	372
FseI	GGCCGGCC	1 cut(s)	208
Fsp4HI	GCNGC	3 cut(s)	40, 60, 390
GluI	GCNGC	3 cut(s)	40, 60, 390
HaeIII	GGCC	2 cut(s)	204, 208
HapII	CCGG	1 cut(s)	205
HgaI	GACGC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	2 cut(s)	378, 411
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	2 cut(s)	124, 277
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	3 cut(s)	82, 161, 298
Hpy8I	GTNNAC	1 cut(s)	240
Hpy99I	CGWCG	5 cut(s)	26, 29, 32, 35, 47
HpyAV	CCTTC	1 cut(s)	29
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	3 cut(s)	361, 371, 393
HpySE526I	ACGT	1 cut(s)	45
KflI	GGGWCCC	1 cut(s)	452
KroI	GCCGGC	1 cut(s)	204
KroNI	GCCGGC	1 cut(s)	206
Kzo9I	GATC	3 cut(s)	77, 290, 556
LmnI	GCTCC	4 cut(s)	101, 142, 181, 305
LpnPI	CCDG	9 cut(s)	132, 159, 218, 248, 275, 306, 333, 531, 549
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	1 cut(s)	83
MabI	ACCWGGT	1 cut(s)	261
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	79, 292, 558
MboI	GATC	3 cut(s)	77, 290, 556
MboII	GAAGA	5 cut(s)	184, 257, 406, 415, 465
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	1 cut(s)	345
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	9 cut(s)	9, 108, 127, 130, 172, 388, 442, 466, 544
MroNI	GCCGGC	1 cut(s)	204
MroXI	GAANNNNTTC	2 cut(s)	410, 519
MseI	TTAA	2 cut(s)	48, 312
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	3 cut(s)	147, 263, 321
Mva1269I	GAATGC	1 cut(s)	429
MvaI	CCWGG	3 cut(s)	147, 263, 321
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	93
NaeI	GCCGGC	1 cut(s)	206
NdeII	GATC	3 cut(s)	77, 290, 556
NgoMIV	GCCGGC	1 cut(s)	204
NlaIV	GGNNCC	3 cut(s)	144, 453, 454
NmuCI	GTSAC	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 30, 39
PctI	GAATGC	1 cut(s)	429
PdiI	GCCGGC	1 cut(s)	206
PdmI	GAANNNNTTC	2 cut(s)	410, 519
PfeI	GAWTC	2 cut(s)	378, 411
PkrI	GCNGC	3 cut(s)	41, 61, 391
Ple19I	CGATCG	1 cut(s)	80
PpuMI	RGGWCCY	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	3 cut(s)	145, 261, 319
PspGI	CCWGG	3 cut(s)	145, 261, 319
PspN4I	GGNNCC	3 cut(s)	144, 453, 454
PspPI	GGNCC	3 cut(s)	207, 259, 452
PspPPI	RGGWCCY	1 cut(s)	452
PvuI	CGATCG	1 cut(s)	80
RigI	GGCCGGCC	1 cut(s)	208
RsaI	GTAC	2 cut(s)	222, 239
RsaNI	GTAC	2 cut(s)	221, 238
SaqAI	TTAA	2 cut(s)	48, 312
SatI	GCNGC	3 cut(s)	40, 60, 390
Sau3AI	GATC	3 cut(s)	77, 290, 556
Sau96I	GGNCC	3 cut(s)	207, 259, 452
ScrFI	CCNGG	3 cut(s)	147, 263, 321
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	9 cut(s)	48, 141, 186, 267, 367, 391, 493, 520, 555
SexAI	ACCWGGT	1 cut(s)	261
SfaNI	GCATC	1 cut(s)	83
SfcI	CTRYAG	1 cut(s)	326
SinI	GGWCC	2 cut(s)	259, 452
Sse9I	AATT	1 cut(s)	345
SsiI	CCGC	4 cut(s)	39, 59, 190, 511
StyD4I	CCNGG	3 cut(s)	145, 261, 319
TaiI	ACGT	1 cut(s)	48
TaqII	GACCGA	2 cut(s)	105, 191
TasI	AATT	1 cut(s)	345
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	2 cut(s)	42, 62
TfiI	GAWTC	2 cut(s)	378, 411
Tru1I	TTAA	2 cut(s)	48, 312
Tru9I	TTAA	2 cut(s)	48, 312
TscAI	CASTG	1 cut(s)	128
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	5 cut(s)	145, 284, 357, 411, 416
TspGWI	ACGGA	3 cut(s)	42, 146, 272
TspRI	CASTG	1 cut(s)	128
VpaK11BI	GGWCC	2 cut(s)	259, 452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmnI	GAANNNNTTC	2 cut(s)	410, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.