Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004708

Physical Location & Seq

Genomic Coordinates Reverse (-)

15148259 .. 15151634

Gene Structure 3376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G36080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCAATAAACCAATACTCAAGCGATTTCCACTACCATTCTCTCATGTGGCAACAACAGCAGCAACAACAACAACACCAAAACGACGTCGTGGAAGAAAAAGAAGCTCTTTTCGAGAAACCCTTAACCCCAAGTGACGTCGGAAAACTCAACCGCCTCGTCATCCCAAAACAGCACGCCGAGAGATACTTCCCACTAGCGGCCGCCGCCGCAGACGCCGTGGAGAAAGGACTTCTCCTCTGCTTTGAGGACGAGGAAGGTAAACCATGGAGATTCAGATACTCGTACTGGAACAGTAGCCAGAGTTATGTCTTGACCAAAGGCTGGAGCAGATACGTCAAGGAGAAGCACCTTGACGCCGGAGACGTCGTTCTCTTCCATCGACACCGTTCAGACGGCGGAAGATTCTTCATTGGCTGGAGAAGACGCGGTGACTCTTCTTCCTCCTCCGACTCTTATCGCCATGTTCAATCCAATGCCTCGCTCCAATATTATCCTCATGCAGGGGCTCAAGCGGTGGAGAGCCAAAGAGGCAACTCGAAGACATTAAGACTGTTCGGAGTGAACATGGAGTGCCAGCTAGATTCGGACTGGTCCGAGCCATCCACACCTGACGGTTCTAACACATATACAACCAATCACGACCAGTTTCATTTCTACCCTCAACAACAACACTATCCTCCTCCGTACTACATGGACATAAGTTTCACAGGAGATATGAACCGGACGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

244

Amino Acids

28.43

Weight (kDa)

6.3

Isoelectric Point (pI)

56.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	38 - 143	1.2e-27	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36080 AT2G36080 AT2G36080 AT2G36080 AT3G11580 AT3G11580 AT3G11580 AT3G11580 AT3G11580 AT5G06250 AT5G06250 AT5G06250 AT5G06250 AT5G06250
fragaria_vesca	FvH4_6g19560 FvH4_6g19560
malus_domestica	MD12G1032000.v1.1 MD14G1032300.v1.1
prunus_persica	Prupe.7G100600_v2.0.a1
pyrus_communis	pycom12g02970 pycom14g02910
rosa_chinensis	RchiOBHm_Chr3g0474911
rosa_laevigata	RLG00000023881
rosa_multiflora	Rmu_sc0008866.1_g000008
rosa_roxburghii	Rroxscaffold_6G00406740
rosa_rugosa	Rorug03G0145500
rosa_samantha	Rh3AG195000 Rh3BG224900 Rh3CG219900 Rh3DG220400
rosa_wichuraiana	Rw3G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	90, 141, 369
AccB7I	CCANNNNNTGG	1 cut(s)	324
AccII	CGCG	1 cut(s)	429
AciI	CCGC	8 cut(s)	154, 200, 204, 207, 210, 399, 429, 515
AcoI	YGGCCR	1 cut(s)	201
AcyI	GRCGYC	5 cut(s)	87, 138, 216, 357, 366
AfaI	GTAC	2 cut(s)	287, 689
AfiI	CCNNNNNNNGG	3 cut(s)	199, 324, 503
AgsI	TTSAA	1 cut(s)	470
AloI	GAACNNNNNNTCC	2 cut(s)	354, 386
AluBI	AGCT	3 cut(s)	107, 580, 732
AluI	AGCT	3 cut(s)	107, 580, 732
Alw26I	GTCTC	1 cut(s)	357
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	594
AsuHPI	GGTGA	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	511
BbsI	GAAGAC	2 cut(s)	430, 548
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	2 cut(s)	387, 610
BceAI	ACGGC	2 cut(s)	203, 412
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	3 cut(s)	197, 581, 733
BglI	GCCNNNNNGGC	1 cut(s)	531
BisI	GCNGC	5 cut(s)	62, 201, 204, 207, 210
BlsI	GCNGC	5 cut(s)	63, 202, 205, 208, 211
Bme18I	GGWCC	1 cut(s)	594
BmgT120I	GGNCC	1 cut(s)	594
BpiI	GAAGAC	2 cut(s)	430, 548
BpmI	CTGGAG	2 cut(s)	346, 439
BpuEI	CTTGAG	2 cut(s)	4, 495
BsaHI	GRCGYC	5 cut(s)	87, 138, 216, 357, 366
BsaJI	CCNNGG	2 cut(s)	219, 266
BsaWI	WCCGGW	1 cut(s)	723
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 324, 503
Bse1I	ACTGG	3 cut(s)	293, 596, 646
BseDI	CCNNGG	2 cut(s)	219, 266
BseGI	GGATG	2 cut(s)	162, 602
BseLI	CCNNNNNNNGG	3 cut(s)	199, 324, 503
BseNI	ACTGG	3 cut(s)	293, 596, 646
BseRI	GAGGAG	3 cut(s)	227, 436, 672
BseX3I	CGGCCG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	73
Bsh1236I	CGCG	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	203
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	360, 724
BslI	CCNNNNNNNGG	3 cut(s)	199, 324, 503
BsmAI	GTCTC	1 cut(s)	357
BsmBI	CGTCTC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp19I	CCATGG	1 cut(s)	266
BspACI	CCGC	8 cut(s)	154, 200, 204, 207, 210, 399, 429, 515
BspANI	GGCC	1 cut(s)	203
BspFNI	CGCG	1 cut(s)	429
BsrI	ACTGG	3 cut(s)	293, 596, 646
BssECI	CCNNGG	2 cut(s)	219, 266
BssNI	GRCGYC	5 cut(s)	87, 138, 216, 357, 366
BssT1I	CCWWGG	1 cut(s)	266
Bst4CI	ACNGT	4 cut(s)	296, 389, 555, 617
Bst6I	CTCTTC	2 cut(s)	380, 442
BstACI	GRCGYC	5 cut(s)	87, 138, 216, 357, 366
BstC8I	GCNNGC	2 cut(s)	177, 578
BstDSI	CCRYGG	2 cut(s)	219, 266
BstENI	CCTNNNNNAGG	1 cut(s)	501
BstF5I	GGATG	2 cut(s)	162, 602
BstFNI	CGCG	1 cut(s)	429
BstMAI	GTCTC	1 cut(s)	357
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 206, 209, 215, 531
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	2 cut(s)	430, 548
BstZI	CGGCCG	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	2 cut(s)	219, 266
BtsCI	GGATG	2 cut(s)	162, 602
Cac8I	GCNNGC	2 cut(s)	177, 578
CciNI	GCGGCCGC	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	594
CseI	GACGC	3 cut(s)	224, 365, 435
Csp6I	GTAC	2 cut(s)	286, 688
CviAII	CATG	6 cut(s)	46, 267, 464, 500, 568, 694
CviQI	GTAC	2 cut(s)	286, 688
EaeI	YGGCCR	1 cut(s)	201
EagI	CGGCCG	1 cut(s)	201
Eam1104I	CTCTTC	2 cut(s)	380, 442
EarI	CTCTTC	2 cut(s)	380, 442
EciI	GGCGGA	1 cut(s)	414
EclXI	CGGCCG	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	594
Eco52I	CGGCCG	1 cut(s)	201
EcoNI	CCTNNNNNAGG	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	266
Esp3I	CGTCTC	1 cut(s)	357
FaeI	CATG	6 cut(s)	49, 270, 467, 503, 571, 697
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FatI	CATG	6 cut(s)	45, 266, 463, 499, 567, 693
Fnu4HI	GCNGC	5 cut(s)	62, 201, 204, 207, 210
FokI	GGATG	2 cut(s)	149, 589
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	5 cut(s)	62, 201, 204, 207, 210
FspBI	CTAG	3 cut(s)	197, 581, 733
GluI	GCNGC	5 cut(s)	62, 201, 204, 207, 210
GsuI	CTGGAG	2 cut(s)	346, 439
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	2 cut(s)	360, 724
HgaI	GACGC	3 cut(s)	224, 365, 435
Hin1I	GRCGYC	5 cut(s)	87, 138, 216, 357, 366
Hin1II	CATG	6 cut(s)	49, 270, 467, 503, 571, 697
HinfI	GANTC	5 cut(s)	273, 405, 434, 452, 584
HpaII	CCGG	2 cut(s)	360, 724
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	2 cut(s)	263, 565
Hpy188I	TCNGA	7 cut(s)	143, 278, 394, 451, 560, 589, 598
Hpy188III	TCNNGA	3 cut(s)	115, 313, 641
Hpy8I	GTNNAC	2 cut(s)	263, 565
Hpy99I	CGWCG	4 cut(s)	89, 92, 143, 371
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	4 cut(s)	296, 389, 555, 617
HpyCH4IV	ACGT	4 cut(s)	87, 138, 336, 366
HpyCH4V	TGCA	1 cut(s)	503
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 206, 209, 215, 531
HpySE526I	ACGT	4 cut(s)	87, 138, 336, 366
Hsp92I	GRCGYC	5 cut(s)	87, 138, 216, 357, 366
Hsp92II	CATG	6 cut(s)	49, 270, 467, 503, 571, 697
LmnI	GCTCC	2 cut(s)	327, 489
Lsp1109I	GCAGC	1 cut(s)	73
MaeI	CTAG	3 cut(s)	197, 581, 733
MaeII	ACGT	4 cut(s)	87, 138, 336, 366
MaeIII	GTNAC	2 cut(s)	134, 431
MboII	GAAGA	8 cut(s)	107, 367, 400, 414, 429, 432, 435, 553
MhlI	GDGCHC	1 cut(s)	511
MlyI	GAGTC	2 cut(s)	428, 446
MmeI	TCCRAC	2 cut(s)	121, 474
MseI	TTAA	2 cut(s)	125, 548
MspI	CCGG	2 cut(s)	360, 724
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	5 cut(s)	58, 206, 209, 215, 531
NcoI	CCATGG	1 cut(s)	266
NlaIII	CATG	6 cut(s)	49, 270, 467, 503, 571, 697
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	2 cut(s)	134, 431
NotI	GCGGCCGC	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PfeI	GAWTC	3 cut(s)	273, 405, 584
PflMI	CCANNNNNTGG	1 cut(s)	324
PkrI	GCNGC	5 cut(s)	63, 202, 205, 208, 211
PleI	GAGTC	2 cut(s)	428, 446
PpsI	GAGTC	2 cut(s)	428, 446
PspPI	GGNCC	1 cut(s)	594
RsaI	GTAC	2 cut(s)	287, 689
RsaNI	GTAC	2 cut(s)	286, 688
SaqAI	TTAA	2 cut(s)	125, 548
SatI	GCNGC	5 cut(s)	62, 201, 204, 207, 210
Sau96I	GGNCC	1 cut(s)	594
SchI	GAGTC	2 cut(s)	428, 446
SduI	GDGCHC	1 cut(s)	511
SinI	GGWCC	1 cut(s)	594
SmlI	CTYRAG	2 cut(s)	19, 510
SmoI	CTYRAG	2 cut(s)	19, 510
SsiI	CCGC	8 cut(s)	154, 200, 204, 207, 210, 399, 429, 515
SspI	AATATT	1 cut(s)	491
SspMI	CTAG	3 cut(s)	197, 581, 733
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	4 cut(s)	296, 389, 555, 617
TaiI	ACGT	4 cut(s)	90, 141, 339, 369
TaqI	TCGA	3 cut(s)	114, 382, 539
TauI	GCSGC	4 cut(s)	203, 206, 209, 212
TfiI	GAWTC	3 cut(s)	273, 405, 584
Tru1I	TTAA	2 cut(s)	125, 548
Tru9I	TTAA	2 cut(s)	125, 548
TseFI	GTSAC	2 cut(s)	134, 431
TseI	GCWGC	1 cut(s)	61
Tsp45I	GTSAC	2 cut(s)	134, 431
TspDTI	ATGAA	3 cut(s)	400, 641, 734
TspGWI	ACGGA	1 cut(s)	675
Van91I	CCANNNNNTGG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	594
XagI	CCTNNNNNAGG	1 cut(s)	501
XspI	CTAG	3 cut(s)	197, 581, 733
ZraI	GACGTC	3 cut(s)	88, 139, 367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.