Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004708

Physical Location & Seq

Genomic Coordinates Forward (+)

11927527 .. 11929367

Gene Structure 1841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0145500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAGACCGGAGGCAAGTTCAAGAAGGGCGCCGGAGGCAGGAAGGCCGGCGGTCCCAAGAAGAAGCCGGTGACCCGGTCGACCAAAGCCGGACTGCAGTTCCCCGTCGGAAGAATCGGCCGGTACTTGAAGAATGGCCGGTACGCTCAGCGGGTCGGATCCGGAGCTCCGGTTTACCTTGCTGCTGTGCTCGAGTACCTTGCTGCTGAGGTTTTGGAATTGGCTGGAAATGCTGCTAGAGACAACAAGAAGAATCGCATTATCCCAAGGCACGTGCTATTGGCTGTGAGGAATGATGAAGAACTCGGAAAGCTGCTGGCTGGTGTGACAATTGCTCATGGTGGTGTGCTTCCCAACATCAACCCTGTGCTTCTGCCAAAGAACTCTGGGAAGACGGCTGCGAAGGAGCCCAAGTCTCCATCCAAAGCCACCAAGTCCCCTAAGAAGGCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009965 GO:0010016 GO:0010073 GO:0010358 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048507 GO:0048519 GO:0048523 GO:0048532 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

151

Amino Acids

15.86

Weight (kDa)

10.65

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	20 - 97	3.8e-13	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	100 - 133	3.4e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36080 AT2G36080 AT2G36080 AT2G36080 AT3G11580 AT3G11580 AT3G11580 AT3G11580 AT3G11580 AT5G06250 AT5G06250 AT5G06250 AT5G06250 AT5G06250
fragaria_vesca	FvH4_6g19560 FvH4_6g19560
malus_domestica	MD12G1032000.v1.1 MD14G1032300.v1.1
prunus_persica	Prupe.7G100600_v2.0.a1
pyrus_communis	pycom12g02970 pycom14g02910
rosa_chinensis	RchiOBHm_Chr3g0474911
rosa_laevigata	RLG00000023881
rosa_multiflora	Rmu_sc0008866.1_g000008
rosa_roxburghii	Rroxscaffold_6G00406740
rosa_rugosa	Rorug03G0145500
rosa_samantha	Rh3AG195000 Rh3BG224900 Rh3CG219900 Rh3DG220400
rosa_wichuraiana	Rw3G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	3 cut(s)	51, 151, 449
AclWI	GGATC	2 cut(s)	153, 166
AcoI	YGGCCR	2 cut(s)	118, 136
AcvI	CACGTG	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	3 cut(s)	125, 143, 197
AfiI	CCNNNNNNNGG	2 cut(s)	39, 445
AgsI	TTSAA	2 cut(s)	22, 130
AluBI	AGCT	2 cut(s)	167, 313
AluI	AGCT	2 cut(s)	167, 313
Alw21I	GWGCWC	2 cut(s)	169, 192
Alw26I	GTCTC	2 cut(s)	234, 420
AlwI	GGATC	2 cut(s)	153, 166
Ama87I	CYCGRG	1 cut(s)	191
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	3 cut(s)	45, 118, 136
ApeKI	GCWGC	5 cut(s)	182, 203, 233, 313, 398
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	53
BamHI	GGATCC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	29
BanII	GRGCYC	2 cut(s)	169, 411
BbrPI	CACGTG	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	398
Bbv12I	GWGCWC	2 cut(s)	169, 192
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	5 cut(s)	169, 190, 220, 300, 385
BccI	CCATC	1 cut(s)	427
BceAI	ACGGC	1 cut(s)	411
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BcnI	CCSGG	1 cut(s)	76
BcoDI	GTCTC	2 cut(s)	234, 420
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	6 cut(s)	183, 204, 234, 314, 399, 450
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	6 cut(s)	184, 205, 235, 315, 400, 451
Bme1390I	CCNGG	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	4 cut(s)	31, 55, 160, 408
BmrFI	CCNGG	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	398
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	76
BsaAI	YACGTR	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	266
BsaWI	WCCGGW	3 cut(s)	8, 161, 169
BsaXI	ACNNNNNCTCC	4 cut(s)	156, 186, 398, 428
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 445
Bse118I	RCCGGY	4 cut(s)	47, 67, 120, 138
BseAI	TCCGGA	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	1 cut(s)	419
BseLI	CCNNNNNNNGG	2 cut(s)	39, 445
BseMII	CTCAG	2 cut(s)	161, 198
BseX3I	CGGCCG	1 cut(s)	118
BseXI	GCAGC	5 cut(s)	169, 190, 220, 300, 385
Bsh1285I	CGRYCG	2 cut(s)	80, 121
BshFI	GGCC	3 cut(s)	47, 120, 138
BshNI	GGYRCC	1 cut(s)	29
BsiEI	CGRYCG	2 cut(s)	80, 121
BsiHKAI	GWGCWC	2 cut(s)	169, 192
BsiHKCI	CYCGRG	1 cut(s)	191
BslFI	GGGAC	2 cut(s)	39, 421
BslI	CCNNNNNNNGG	2 cut(s)	39, 445
BsmAI	GTCTC	2 cut(s)	234, 420
BsmFI	GGGAC	2 cut(s)	39, 421
BsnI	GGCC	3 cut(s)	47, 120, 138
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	3 cut(s)	169, 192, 411
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	158
Bsp1720I	GCTNAGC	1 cut(s)	147
BspACI	CCGC	3 cut(s)	51, 151, 449
BspANI	GGCC	3 cut(s)	47, 120, 138
BspCNI	CTCAG	2 cut(s)	160, 199
BspEI	TCCGGA	1 cut(s)	161
BspLI	GGNNCC	4 cut(s)	31, 55, 160, 408
BspMAI	CTGCAG	1 cut(s)	99
BspPI	GGATC	2 cut(s)	153, 166
BspT107I	GGYRCC	1 cut(s)	29
BsrFI	RCCGGY	4 cut(s)	47, 67, 120, 138
BssAI	RCCGGY	4 cut(s)	47, 67, 120, 138
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	1 cut(s)	158
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	266
BstACI	GRCGYC	1 cut(s)	30
BstBAI	YACGTR	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	49, 318
BstDEI	CTNAG	4 cut(s)	147, 207, 441, 453
BstEII	GGTNACC	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	419
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	161
BstMAI	GTCTC	2 cut(s)	234, 420
BstMBI	GATC	1 cut(s)	158
BstMCI	CGRYCG	2 cut(s)	80, 121
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 230
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	95
BstV1I	GCAGC	5 cut(s)	169, 190, 220, 300, 385
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
BstZI	CGGCCG	1 cut(s)	118
BsuRI	GGCC	3 cut(s)	47, 120, 138
BtsCI	GGATG	1 cut(s)	419
Cac8I	GCNNGC	2 cut(s)	49, 318
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	4 cut(s)	47, 67, 120, 138
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	3 cut(s)	124, 142, 196
CviAII	CATG	1 cut(s)	338
CviQI	GTAC	3 cut(s)	124, 142, 196
DdeI	CTNAG	4 cut(s)	147, 207, 441, 453
DinI	GGCGCC	1 cut(s)	31
DpnI	GATC	1 cut(s)	160
DpnII	GATC	1 cut(s)	158
EaeI	YGGCCR	2 cut(s)	118, 136
EagI	CGGCCG	1 cut(s)	118
Ecl136II	GAGCTC	1 cut(s)	167
EclXI	CGGCCG	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	266
Eco24I	GRGCYC	2 cut(s)	169, 411
Eco47I	GGWCC	1 cut(s)	53
Eco52I	CGGCCG	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	167
Eco72I	CACGTG	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	191
Eco91I	GGTNACC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	266
EcoT38I	GRGCYC	2 cut(s)	169, 411
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	266
FaeI	CATG	1 cut(s)	341
FaiI	YATR	1 cut(s)	339
FaqI	GGGAC	2 cut(s)	39, 421
FatI	CATG	1 cut(s)	337
FauI	CCCGC	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	6 cut(s)	183, 204, 234, 314, 399, 450
FokI	GGATG	1 cut(s)	406
FriOI	GRGCYC	2 cut(s)	169, 411
Fsp4HI	GCNGC	6 cut(s)	183, 204, 234, 314, 399, 450
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	6 cut(s)	183, 204, 234, 314, 399, 450
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	3 cut(s)	47, 120, 138
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	341
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	2 cut(s)	114, 253
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	81, 175
Hpy188I	TCNGA	3 cut(s)	110, 158, 308
Hpy188III	TCNNGA	2 cut(s)	22, 162
Hpy8I	GTNNAC	2 cut(s)	81, 175
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	4 cut(s)	19, 37, 397, 439
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 230
HpyF3I	CTNAG	4 cut(s)	147, 207, 441, 453
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	341
HspAI	GCGC	1 cut(s)	30
KasI	GGCGCC	1 cut(s)	29
Kpn2I	TCCGGA	1 cut(s)	161
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	158
LmnI	GCTCC	3 cut(s)	164, 172, 406
Lsp1109I	GCAGC	5 cut(s)	169, 190, 220, 300, 385
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	70, 325
MalI	GATC	1 cut(s)	160
MboI	GATC	1 cut(s)	158
MboII	GAAGA	6 cut(s)	73, 123, 142, 262, 311, 403
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	3 cut(s)	169, 192, 411
MluCI	AATT	2 cut(s)	218, 330
Mly113I	GGCGCC	1 cut(s)	30
MmeI	TCCRAC	2 cut(s)	88, 136
MnlI	CCTC	4 cut(s)	5, 29, 202, 282
MroI	TCCGGA	1 cut(s)	161
MroNI	GCCGGC	1 cut(s)	47
MslI	CAYNNNNRTG	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	76
MunI	CAATTG	1 cut(s)	330
MwoI	GCNNNNNNNGC	2 cut(s)	36, 230
NaeI	GCCGGC	1 cut(s)	49
NarI	GGCGCC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	1 cut(s)	158
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	4 cut(s)	31, 55, 160, 408
NmuCI	GTSAC	2 cut(s)	70, 325
PaeR7I	CTCGAG	1 cut(s)	191
PdiI	GCCGGC	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	114, 253
PflFI	GACNNNGTC	1 cut(s)	76
PkrI	GCNGC	6 cut(s)	184, 205, 235, 315, 400, 451
PluTI	GGCGCC	1 cut(s)	33
PmaCI	CACGTG	1 cut(s)	274
PmlI	CACGTG	1 cut(s)	274
Ppu21I	YACGTR	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	169
PspCI	CACGTG	1 cut(s)	274
PspEI	GGTNACC	1 cut(s)	70
PspN4I	GGNNCC	4 cut(s)	31, 55, 160, 408
PspPI	GGNCC	1 cut(s)	53
PspXI	VCTCGAGB	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	158
PsyI	GACNNNGTC	1 cut(s)	76
RsaI	GTAC	3 cut(s)	125, 143, 197
RsaNI	GTAC	3 cut(s)	124, 142, 196
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	169
SalI	GTCGAC	1 cut(s)	79
SatI	GCNGC	6 cut(s)	183, 204, 234, 314, 399, 450
Sau3AI	GATC	1 cut(s)	158
Sau96I	GGNCC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	3 cut(s)	169, 192, 411
SetI	ASST	6 cut(s)	169, 180, 201, 213, 276, 315
SfcI	CTRYAG	1 cut(s)	95
SfoI	GGCGCC	1 cut(s)	31
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	2 cut(s)	218, 330
SsiI	CCGC	3 cut(s)	51, 151, 449
SspDI	GGCGCC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	266
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	80, 192
TasI	AATT	2 cut(s)	218, 330
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	114, 253
TseFI	GTSAC	2 cut(s)	70, 325
TseI	GCWGC	5 cut(s)	182, 203, 233, 313, 398
Tsp45I	GTSAC	2 cut(s)	70, 325
TspDTI	ATGAA	1 cut(s)	312
Tth111I	GACNNNGTC	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	80
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.