Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004708

Physical Location & Seq

Genomic Coordinates Reverse (-)

13080721 .. 13084961

Gene Structure 4241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19560.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGTCCTTGAACCATTTCTCTCCCTCCGAGCTTCAAGAAACGCAGTGGTGGAACAACTCGACGACGTCTCAACAAAACCAGCATCAACAGCCTCCTTCATCATTCACCATGGACGCTTTCCAGCCTCAACTCTATCAGAATTACCATCCCACCTGGCTCGGCTCCCAAATCGCCCAACAGCCCCCGACCCTCAACTTCAACCTCAACCATCAACACACCGACGCTGCCGACAGAGAATTACTCCACGCGGAGCTTCAGATCGACATGGGAGATGACAAAGAGACCATGTTCGAGAAGCCGCTGACGCCTAGCGACGTCGGCAAGCTCAACCGCCTCGTCATTCCCAAGCAGCACGCCGAGAAGTACTTCCCTCTCGGCGGTGGCGGTGGCGGAGAGTCGGGAGGCGAGAAGGGTCTGCTTCTGAGCTTCGAGGACGAGTCCGGAAAGTGCTGGAGGTTCCGGTACTCGTACTGGAACAGCAGTCAAAGCTACGTGTTAACCAAAGGGTGGAGCCGCTACGTGAAGGAAAAGCGCCTCGACGCCGGCGACGTCGTTTTGTTCGAGCGTCGCCGAAACGACAGCGAGCGCCTCTTCATTGGGTGGAGGCGCCGTGCGGTGCAAGAGAGCAGCGGCGCTGGTGGTGGGGGTAGTACTAACACGTCGGCGCATGTTAGCGGAAGCAGCGGGGGTGGTGGTGAAAGTGGAGGTGGTAGAGGAGGTTGGACCAGGATGTTCTACTCTGCGCCGCAGTCTTATCCTGCGCACCATCATCACAGTGTGCCATACCCACCTGACTATCTACAGCATGCAGCCACAGCAGGGTCTCCTGTTCAGAACCAGACTCCGTCGTCGTCCTCCGGCGGAAACTCGAGGATATTGAGGCTGTTTGGGGTGAACTTGGAGTGCCAGCAGCAGCAGGATGATGAGTCCGAACCATCCACACCAGATGGGTCGTCTTTGTCAAGCCAGGGTCCAACCCACCACCAGTTCTATCCTAATCCTACCAATGCTTATTATGGAGACCACAGGGATTTCACTTTCTCCAGAGATGCGAACCCCCCCATGAGAAATCAACGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009965 GO:0010016 GO:0010073 GO:0010358 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048507 GO:0048519 GO:0048523 GO:0048532 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

361

Amino Acids

40.08

Weight (kDa)

6.23

Isoelectric Point (pI)

60.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	97 - 204	4.1e-27	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36080 AT2G36080 AT2G36080 AT2G36080 AT3G11580 AT3G11580 AT3G11580 AT3G11580 AT3G11580 AT5G06250 AT5G06250 AT5G06250 AT5G06250 AT5G06250
fragaria_vesca	FvH4_6g19560 FvH4_6g19560
malus_domestica	MD12G1032000.v1.1 MD14G1032300.v1.1
prunus_persica	Prupe.7G100600_v2.0.a1
pyrus_communis	pycom12g02970 pycom14g02910
rosa_chinensis	RchiOBHm_Chr3g0474911
rosa_laevigata	RLG00000023881
rosa_multiflora	Rmu_sc0008866.1_g000008
rosa_roxburghii	Rroxscaffold_6G00406740
rosa_rugosa	Rorug03G0145500
rosa_samantha	Rh3AG195000 Rh3BG224900 Rh3CG219900 Rh3DG220400
rosa_wichuraiana	Rw3G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	847
AatII	GACGTC	3 cut(s)	68, 318, 552
Acc16I	TGCGCA	1 cut(s)	762
AccB1I	GGYRCC	1 cut(s)	606
AccB7I	CCANNNNNTGG	1 cut(s)	507
AccII	CGCG	1 cut(s)	248
AccIII	TCCGGA	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	239
AcyI	GRCGYC	6 cut(s)	65, 305, 315, 540, 549, 607
AdeI	CACNNNGTG	1 cut(s)	778
AfaI	GTAC	4 cut(s)	365, 464, 470, 652
AfiI	CCNNNNNNNGG	3 cut(s)	377, 507, 819
AflIII	ACRYGT	2 cut(s)	492, 657
AgsI	TTSAA	3 cut(s)	10, 35, 199
AjiI	CACGTC	1 cut(s)	660
AjnI	CCWGG	3 cut(s)	152, 725, 966
AluBI	AGCT	5 cut(s)	31, 253, 325, 426, 489
AluI	AGCT	5 cut(s)	31, 253, 325, 426, 489
Alw26I	GTCTC	4 cut(s)	72, 275, 828, 1014
Ama87I	CYCGRG	1 cut(s)	868
Aor13HI	TCCGGA	1 cut(s)	440
ApeKI	GCWGC	7 cut(s)	224, 349, 627, 681, 809, 910, 913
Asp700I	GAANNNNTTC	2 cut(s)	14, 365
AspLEI	GCGC	7 cut(s)	534, 588, 609, 635, 667, 745, 763
AspS9I	GGNCC	2 cut(s)	723, 971
AsuHPI	GGTGA	3 cut(s)	97, 707, 904
AvaI	CYCGRG	1 cut(s)	868
AvaII	GGWCC	2 cut(s)	723, 971
BanI	GGYRCC	1 cut(s)	606
BbvI	GCAGC	7 cut(s)	211, 361, 639, 693, 821, 922, 925
BccI	CCATC	5 cut(s)	153, 216, 774, 941, 943
BceAI	ACGGC	1 cut(s)	594
BciT130I	CCWGG	3 cut(s)	154, 727, 968
BcoDI	GTCTC	4 cut(s)	72, 275, 828, 1014
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	800
BfoI	RGCGCY	4 cut(s)	535, 589, 610, 636
BmcAI	AGTACT	2 cut(s)	365, 652
Bme1390I	CCNGG	3 cut(s)	154, 727, 968
Bme18I	GGWCC	2 cut(s)	723, 971
BmeT110I	CYCGRG	1 cut(s)	868
BmgBI	CACGTC	1 cut(s)	660
BmgT120I	GGNCC	2 cut(s)	723, 971
BmiI	GGNNCC	5 cut(s)	163, 458, 512, 608, 972
BmrFI	CCNGG	3 cut(s)	154, 727, 968
BmsI	GCATC	2 cut(s)	91, 1039
BplI	GAGNNNNNCTC	2 cut(s)	225, 257
BpmI	CTGGAG	2 cut(s)	472, 1027
BsaAI	YACGTR	2 cut(s)	493, 520
BsaHI	GRCGYC	6 cut(s)	65, 305, 315, 540, 549, 607
BsaI	GGTCTC	3 cut(s)	275, 828, 1014
BsaJI	CCNNGG	2 cut(s)	108, 967
BsaWI	WCCGGW	2 cut(s)	440, 459
BsaXI	ACNNNNNCTCC	2 cut(s)	595, 625
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 507, 819
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	2 cut(s)	476, 985
BseAI	TCCGGA	1 cut(s)	440
BseBI	CCWGG	3 cut(s)	154, 727, 968
BseDI	CCNNGG	2 cut(s)	108, 967
BseGI	GGATG	4 cut(s)	145, 735, 925, 935
BseLI	CCNNNNNNNGG	3 cut(s)	377, 507, 819
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	476, 985
BseRI	GAGGAG	1 cut(s)	729
BseXI	GCAGC	7 cut(s)	211, 361, 639, 693, 821, 922, 925
Bsh1236I	CGCG	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	606
BsiHKCI	CYCGRG	1 cut(s)	868
BsiSI	CCGG	4 cut(s)	441, 460, 543, 858
BslI	CCNNNNNNNGG	3 cut(s)	377, 507, 819
BsmAI	GTCTC	4 cut(s)	72, 275, 828, 1014
BsmBI	CGTCTC	1 cut(s)	72
Bso31I	GGTCTC	3 cut(s)	275, 828, 1014
BsoBI	CYCGRG	1 cut(s)	868
Bsp13I	TCCGGA	1 cut(s)	440
Bsp143I	GATC	1 cut(s)	258
Bsp19I	CCATGG	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	414
BspEI	TCCGGA	1 cut(s)	440
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	5 cut(s)	163, 458, 512, 608, 972
BspT107I	GGYRCC	1 cut(s)	606
BspTNI	GGTCTC	3 cut(s)	275, 828, 1014
BsrFI	RCCGGY	1 cut(s)	542
BsrI	ACTGG	2 cut(s)	476, 985
BssAI	RCCGGY	1 cut(s)	542
BssECI	CCNNGG	2 cut(s)	108, 967
BssMI	GATC	1 cut(s)	258
BssNI	GRCGYC	6 cut(s)	65, 305, 315, 540, 549, 607
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	3 cut(s)	154, 727, 968
Bst4CI	ACNGT	1 cut(s)	776
Bst6I	CTCTTC	1 cut(s)	596
BstACI	GRCGYC	6 cut(s)	65, 305, 315, 540, 549, 607
BstBAI	YACGTR	2 cut(s)	493, 520
BstC8I	GCNNGC	6 cut(s)	323, 354, 544, 584, 807, 908
BstDEI	CTNAG	1 cut(s)	422
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	4 cut(s)	145, 735, 925, 935
BstFNI	CGCG	1 cut(s)	248
BstH2I	RGCGCY	4 cut(s)	535, 589, 610, 636
BstHHI	GCGC	7 cut(s)	534, 588, 609, 635, 667, 745, 763
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	4 cut(s)	72, 275, 828, 1014
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	6 cut(s)	88, 304, 318, 486, 681, 815
BstNI	CCWGG	3 cut(s)	154, 727, 968
BstNSI	RCATGY	2 cut(s)	671, 809
BstSCI	CCNGG	3 cut(s)	152, 725, 966
BstSFI	CTRYAG	1 cut(s)	800
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	7 cut(s)	211, 361, 639, 693, 821, 922, 925
BtgI	CCRYGG	1 cut(s)	108
BtrI	CACGTC	1 cut(s)	660
BtsCI	GGATG	4 cut(s)	145, 735, 925, 935
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	2 cut(s)	50, 781
Cac8I	GCNNGC	6 cut(s)	323, 354, 544, 584, 807, 908
CfoI	GCGC	7 cut(s)	534, 588, 609, 635, 667, 745, 763
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	2 cut(s)	723, 971
CseI	GACGC	5 cut(s)	122, 230, 313, 548, 554
Csp6I	GTAC	4 cut(s)	364, 463, 469, 651
CviAII	CATG	6 cut(s)	109, 265, 286, 668, 806, 1063
CviQI	GTAC	4 cut(s)	364, 463, 469, 651
DdeI	CTNAG	1 cut(s)	422
DinI	GGCGCC	1 cut(s)	608
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
DraIII	CACNNNGTG	1 cut(s)	778
DrdI	GACNNNNNNGTC	1 cut(s)	847
DseDI	GACNNNNNNGTC	1 cut(s)	847
Eam1104I	CTCTTC	1 cut(s)	596
EarI	CTCTTC	1 cut(s)	596
EciI	GGCGGA	2 cut(s)	405, 876
Eco130I	CCWWGG	1 cut(s)	108
Eco31I	GGTCTC	3 cut(s)	275, 828, 1014
Eco47I	GGWCC	2 cut(s)	723, 971
Eco57I	CTGAAG	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	868
EcoRII	CCWGG	3 cut(s)	152, 725, 966
EcoT14I	CCWWGG	1 cut(s)	108
EgeI	GGCGCC	1 cut(s)	608
EheI	GGCGCC	1 cut(s)	608
ErhI	CCWWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	6 cut(s)	112, 268, 289, 671, 809, 1066
FaiI	YATR	8 cut(s)	110, 266, 287, 669, 784, 807, 1017, 1064
FatI	CATG	6 cut(s)	108, 264, 285, 667, 805, 1062
FauI	CCCGC	1 cut(s)	677
FokI	GGATG	4 cut(s)	132, 742, 922, 932
FspBI	CTAG	1 cut(s)	309
FspI	TGCGCA	1 cut(s)	762
GlaI	GCGC	7 cut(s)	533, 587, 608, 634, 666, 744, 762
GsuI	CTGGAG	2 cut(s)	472, 1027
HaeII	RGCGCY	4 cut(s)	535, 589, 610, 636
HapII	CCGG	4 cut(s)	441, 460, 543, 858
HgaI	GACGC	5 cut(s)	122, 230, 313, 548, 554
HhaI	GCGC	7 cut(s)	534, 588, 609, 635, 667, 745, 763
Hin1I	GRCGYC	6 cut(s)	65, 305, 315, 540, 549, 607
Hin1II	CATG	6 cut(s)	112, 268, 289, 671, 809, 1066
Hin6I	GCGC	7 cut(s)	532, 586, 607, 633, 665, 743, 761
HinP1I	GCGC	7 cut(s)	532, 586, 607, 633, 665, 743, 761
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HinfI	GANTC	4 cut(s)	395, 437, 841, 926
HpaI	GTTAAC	1 cut(s)	498
HpaII	CCGG	4 cut(s)	441, 460, 543, 858
HphI	GGTGA	3 cut(s)	97, 707, 904
Hpy166II	GTNNAC	2 cut(s)	498, 895
Hpy188I	TCNGA	6 cut(s)	28, 138, 258, 423, 834, 931
Hpy188III	TCNNGA	5 cut(s)	35, 292, 399, 441, 1044
Hpy8I	GTNNAC	2 cut(s)	498, 895
HpyAV	CCTTC	3 cut(s)	105, 403, 517
HpyCH4III	ACNGT	1 cut(s)	776
HpyCH4IV	ACGT	6 cut(s)	65, 315, 492, 519, 549, 659
HpyCH4V	TGCA	2 cut(s)	619, 809
HpyF10VI	GCNNNNNNNGC	6 cut(s)	88, 304, 318, 486, 681, 815
HpyF3I	CTNAG	1 cut(s)	422
HpySE526I	ACGT	6 cut(s)	65, 315, 492, 519, 549, 659
Hsp92I	GRCGYC	6 cut(s)	65, 305, 315, 540, 549, 607
Hsp92II	CATG	6 cut(s)	112, 268, 289, 671, 809, 1066
HspAI	GCGC	7 cut(s)	532, 586, 607, 633, 665, 743, 761
KasI	GGCGCC	1 cut(s)	606
Kpn2I	TCCGGA	1 cut(s)	440
KroI	GCCGGC	1 cut(s)	542
KroNI	GCCGGC	1 cut(s)	544
KspAI	GTTAAC	1 cut(s)	498
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	3 cut(s)	167, 250, 510
Lsp1109I	GCAGC	7 cut(s)	211, 361, 639, 693, 821, 922, 925
LweI	GCATC	2 cut(s)	91, 1039
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	6 cut(s)	65, 315, 492, 519, 549, 659
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	1 cut(s)	583
MluCI	AATT	2 cut(s)	139, 236
Mly113I	GGCGCC	1 cut(s)	607
MlyI	GAGTC	4 cut(s)	404, 446, 835, 935
MmeI	TCCRAC	2 cut(s)	701, 998
MreI	CGCCGGCG	1 cut(s)	542
MroI	TCCGGA	1 cut(s)	440
MroNI	GCCGGC	1 cut(s)	542
MroXI	GAANNNNTTC	2 cut(s)	14, 365
MseI	TTAA	1 cut(s)	497
MslI	CAYNNNNRTG	1 cut(s)	774
MspA1I	CMGCKG	3 cut(s)	301, 630, 684
MspI	CCGG	4 cut(s)	441, 460, 543, 858
MspR9I	CCNGG	3 cut(s)	154, 727, 968
MvaI	CCWGG	3 cut(s)	154, 727, 968
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	6 cut(s)	88, 304, 318, 486, 681, 815
NaeI	GCCGGC	1 cut(s)	544
NarI	GGCGCC	1 cut(s)	607
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	1 cut(s)	258
NgoMIV	GCCGGC	1 cut(s)	542
NlaIII	CATG	6 cut(s)	112, 268, 289, 671, 809, 1066
NlaIV	GGNNCC	5 cut(s)	163, 458, 512, 608, 972
NmeAIII	GCCGAG	3 cut(s)	138, 354, 382
NsbI	TGCGCA	1 cut(s)	762
NspI	RCATGY	2 cut(s)	671, 809
PaeI	GCATGC	1 cut(s)	809
PaeR7I	CTCGAG	1 cut(s)	868
PcsI	WCGNNNNNNNCGW	3 cut(s)	543, 546, 558
PdiI	GCCGGC	1 cut(s)	544
PdmI	GAANNNNTTC	2 cut(s)	14, 365
PflFI	GACNNNGTC	2 cut(s)	64, 844
PflMI	CCANNNNNTGG	1 cut(s)	507
PleI	GAGTC	4 cut(s)	403, 445, 835, 934
PluTI	GGCGCC	1 cut(s)	610
PpsI	GAGTC	4 cut(s)	403, 445, 835, 934
Ppu21I	YACGTR	2 cut(s)	493, 520
Psp6I	CCWGG	3 cut(s)	152, 725, 966
PspGI	CCWGG	3 cut(s)	152, 725, 966
PspN4I	GGNNCC	5 cut(s)	163, 458, 512, 608, 972
PspPI	GGNCC	2 cut(s)	723, 971
PspXI	VCTCGAGB	1 cut(s)	868
PsyI	GACNNNGTC	2 cut(s)	64, 844
RsaI	GTAC	4 cut(s)	365, 464, 470, 652
RsaNI	GTAC	4 cut(s)	364, 463, 469, 651
RseI	CAYNNNNRTG	1 cut(s)	774
SaqAI	TTAA	1 cut(s)	497
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	2 cut(s)	723, 971
ScaI	AGTACT	2 cut(s)	365, 652
SchI	GAGTC	4 cut(s)	404, 446, 835, 935
ScrFI	CCNGG	3 cut(s)	154, 727, 968
SfaNI	GCATC	2 cut(s)	91, 1039
SfcI	CTRYAG	1 cut(s)	800
SfoI	GGCGCC	1 cut(s)	608
Sfr274I	CTCGAG	1 cut(s)	868
SgrAI	CRCCGGYG	1 cut(s)	542
SinI	GGWCC	2 cut(s)	723, 971
SlaI	CTCGAG	1 cut(s)	868
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	1 cut(s)	868
SmoI	CTYRAG	1 cut(s)	868
SphI	GCATGC	1 cut(s)	809
Sse9I	AATT	2 cut(s)	139, 236
SspDI	GGCGCC	1 cut(s)	606
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	3 cut(s)	152, 725, 966
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	776
TaiI	ACGT	6 cut(s)	68, 318, 495, 522, 552, 662
TaqI	TCGA	7 cut(s)	59, 261, 291, 429, 537, 561, 869
TasI	AATT	2 cut(s)	139, 236
TatI	WGTACW	2 cut(s)	363, 650
TauI	GCSGC	4 cut(s)	301, 516, 633, 748
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TscAI	CASTG	2 cut(s)	50, 781
TseI	GCWGC	7 cut(s)	224, 349, 627, 681, 809, 910, 913
TspDTI	ATGAA	2 cut(s)	87, 583
TspGWI	ACGGA	1 cut(s)	834
TspRI	CASTG	2 cut(s)	50, 781
Tth111I	GACNNNGTC	2 cut(s)	64, 844
Van91I	CCANNNNNTGG	1 cut(s)	507
VpaK11BI	GGWCC	2 cut(s)	723, 971
XceI	RCATGY	2 cut(s)	671, 809
XhoI	CTCGAG	1 cut(s)	868
XmnI	GAANNNNTTC	2 cut(s)	14, 365
XspI	CTAG	1 cut(s)	309
ZraI	GACGTC	3 cut(s)	66, 316, 550
ZrmI	AGTACT	2 cut(s)	365, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.