Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004708

Physical Location & Seq

Genomic Coordinates Forward (+)

29285196 .. 29288886

Gene Structure 3691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00406740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTCCTTGAACCATTTCTCTTCCTCCGAGCTTCAAGAAACGCAGTGGTGGAACAACTCGACGACTCAACAAAACCAGCAACAGCCCCCTGAATTCACCATGGACACTTTCCACCCTCAATTGTATCAAAATTACCAGCCCGGCTGGCTCGGCTCCCAAATCCCCCAACAGCCCCCGACCCTCAATTTCAACCTCAACCATCAACACAACGACGCCGCCGACAGAGAATTACAACAGCCAGAACTTCAGATCGACATGGAGGATGACAAAGAGACCATGTTCGAGAAGCCGCTGACCCCAAGCGACGTCGGCAAGCTCAACCGCCTCGTCATTCCCAAGCAGCACGCCGAGAGGTACTTCCCTCTCGGCGGCAGCAACGGCGGAGAGTCAGGAGGAGAGAAGGGGCTGCTGCTGAGCTTCGAGGATGAGTCCGGAAAGTGCTGGAGGTTCCGGTACTCGTACTGGAACAGCAGCCAAAGCTATGTATTAACCAAAGGGTGGAGCCGCTACGTGAAGGAAAAGCGCCTCGACGCCGGGGACGTAGTTTTGTTCGAGCGGCGCCGAAACGACAGCGAGCGCCTCTTCATTGGGTGGAGGCGACGTGCGGGGCAAGAGAGCAGCGGCGCTGGTGGTGGGGCTAGTAACACGTCGGCGCAGGTTAGCGGAAGCGGCGGGGGTGGTGGTGCTGGTGCCGGTGCCGGTGTTGAAAGTGGAGGTAGTAGAGCTGGTTGGACCAGGATCTTCTATTCTGGGCCGCAGTCTTATCCTGCGCCCCATCATCACAGTGTGCCATACCCACCTGACTATCTACATCATGCAGCCGCAGCGGCAGCAGGATCTCCGGTTCAGAACCAGACGCCGTCGTCGTCATCGGGCGGCAACTCGAGGATATTGAGGCTGTTTGGGGTGAACTTGGAGTGCCAGCAGCAGCAGGATGATGAGTCCGAACCATCCACACCAGATGGGTCGTCTTTGTCAAGCCAGGGTCCAACCCACCACCAGTTCTATCCTAATCCTACTAATGCTTATTATGGAGACCACAGGGATTTCACTTTCTCCAGAAATGCGAACCCCCCCATGAGAAATCGACGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009965 GO:0010016 GO:0010073 GO:0010358 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048507 GO:0048519 GO:0048523 GO:0048532 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

365

Amino Acids

40.48

Weight (kDa)

6.11

Isoelectric Point (pI)

61.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	94 - 201	5.6e-27	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36080 AT2G36080 AT2G36080 AT2G36080 AT3G11580 AT3G11580 AT3G11580 AT3G11580 AT3G11580 AT5G06250 AT5G06250 AT5G06250 AT5G06250 AT5G06250
fragaria_vesca	FvH4_6g19560 FvH4_6g19560
malus_domestica	MD12G1032000.v1.1 MD14G1032300.v1.1
prunus_persica	Prupe.7G100600_v2.0.a1
pyrus_communis	pycom12g02970 pycom14g02910
rosa_chinensis	RchiOBHm_Chr3g0474911
rosa_laevigata	RLG00000023881
rosa_multiflora	Rmu_sc0008866.1_g000008
rosa_roxburghii	Rroxscaffold_6G00406740
rosa_rugosa	Rorug03G0145500
rosa_samantha	Rh3AG195000 Rh3BG224900 Rh3CG219900 Rh3DG220400
rosa_wichuraiana	Rw3G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	862
AatII	GACGTC	1 cut(s)	309
Acc36I	ACCTGC	1 cut(s)	646
AccB1I	GGYRCC	3 cut(s)	558, 689, 695
AccB7I	CCANNNNNTGG	1 cut(s)	498
AccBSI	CCGCTC	1 cut(s)	556
AccIII	TCCGGA	1 cut(s)	431
AclWI	GGATC	2 cut(s)	746, 844
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	230
AcyI	GRCGYC	5 cut(s)	213, 306, 531, 559, 857
AdeI	CACNNNGTG	1 cut(s)	787
AfaI	GTAC	3 cut(s)	356, 455, 461
AfiI	CCNNNNNNNGG	2 cut(s)	368, 498
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	4 cut(s)	10, 35, 190, 707
AjiI	CACGTC	2 cut(s)	602, 648
AjnI	CCWGG	2 cut(s)	734, 981
AloI	GAACNNNNNNTCC	2 cut(s)	828, 860
AluBI	AGCT	5 cut(s)	31, 316, 417, 480, 725
AluI	AGCT	5 cut(s)	31, 316, 417, 480, 725
Alw26I	GTCTC	2 cut(s)	266, 1029
AlwI	GGATC	2 cut(s)	746, 844
Ama87I	CYCGRG	1 cut(s)	883
Aor13HI	TCCGGA	1 cut(s)	431
AoxI	GGCC	1 cut(s)	752
ApoI	RAATTY	1 cut(s)	92
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	6 cut(s)	525, 561, 579, 626, 655, 772
AspS9I	GGNCC	3 cut(s)	732, 752, 986
AsuC2I	CCSGG	2 cut(s)	141, 535
AsuHPI	GGTGA	2 cut(s)	88, 919
AvaI	CYCGRG	1 cut(s)	883
AvaII	GGWCC	2 cut(s)	732, 986
BanI	GGYRCC	3 cut(s)	558, 689, 695
BccI	CCATC	4 cut(s)	207, 783, 956, 958
BceAI	ACGGC	2 cut(s)	394, 844
BciT130I	CCWGG	2 cut(s)	736, 983
BcnI	CCSGG	2 cut(s)	141, 535
BcoDI	GTCTC	2 cut(s)	266, 1029
BfaI	CTAG	1 cut(s)	639
BfoI	RGCGCY	4 cut(s)	526, 562, 580, 627
BfuAI	ACCTGC	1 cut(s)	646
BglI	GCCNNNNNGGC	2 cut(s)	145, 827
BlpI	GCTNAGC	1 cut(s)	413
Bme1390I	CCNGG	4 cut(s)	141, 535, 736, 983
Bme18I	GGWCC	2 cut(s)	732, 986
BmeT110I	CYCGRG	1 cut(s)	883
BmgBI	CACGTC	2 cut(s)	602, 648
BmgT120I	GGNCC	3 cut(s)	732, 752, 986
BmiI	GGNNCC	7 cut(s)	154, 449, 503, 560, 691, 697, 987
BmrFI	CCNGG	4 cut(s)	141, 535, 736, 983
BpmI	CTGGAG	2 cut(s)	463, 1042
Bpu1102I	GCTNAGC	1 cut(s)	413
BpuMI	CCSGG	2 cut(s)	141, 535
BsaAI	YACGTR	1 cut(s)	511
BsaHI	GRCGYC	5 cut(s)	213, 306, 531, 559, 857
BsaI	GGTCTC	2 cut(s)	266, 1029
BsaJI	CCNNGG	3 cut(s)	99, 534, 982
BsaWI	WCCGGW	3 cut(s)	431, 450, 841
BsaXI	ACNNNNNCTCC	2 cut(s)	586, 616
Bsc4I	CCNNNNNNNGG	2 cut(s)	368, 498
Bse118I	RCCGGY	2 cut(s)	692, 698
Bse1I	ACTGG	2 cut(s)	467, 1000
BseAI	TCCGGA	1 cut(s)	431
BseBI	CCWGG	2 cut(s)	736, 983
BseDI	CCNNGG	3 cut(s)	99, 534, 982
BseGI	GGATG	4 cut(s)	268, 430, 940, 950
BseLI	CCNNNNNNNGG	2 cut(s)	368, 498
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	2 cut(s)	467, 1000
BseRI	GAGGAG	1 cut(s)	408
BshFI	GGCC	1 cut(s)	754
BshNI	GGYRCC	3 cut(s)	558, 689, 695
BsiHKCI	CYCGRG	1 cut(s)	883
BsiSI	CCGG	7 cut(s)	141, 432, 451, 534, 693, 699, 842
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	2 cut(s)	368, 498
BsmAI	GTCTC	2 cut(s)	266, 1029
BsmFI	GGGAC	1 cut(s)	551
BsnI	GGCC	1 cut(s)	754
Bso31I	GGTCTC	2 cut(s)	266, 1029
BsoBI	CYCGRG	1 cut(s)	883
Bsp13I	TCCGGA	1 cut(s)	431
Bsp143I	GATC	3 cut(s)	249, 738, 836
Bsp1720I	GCTNAGC	1 cut(s)	413
Bsp19I	CCATGG	1 cut(s)	99
BspANI	GGCC	1 cut(s)	754
BspCNI	CTCAG	1 cut(s)	405
BspEI	TCCGGA	1 cut(s)	431
BspLI	GGNNCC	7 cut(s)	154, 449, 503, 560, 691, 697, 987
BspMI	ACCTGC	1 cut(s)	646
BspPI	GGATC	2 cut(s)	746, 844
BspT107I	GGYRCC	3 cut(s)	558, 689, 695
BspTNI	GGTCTC	2 cut(s)	266, 1029
BsrBI	CCGCTC	1 cut(s)	556
BsrFI	RCCGGY	2 cut(s)	692, 698
BsrI	ACTGG	2 cut(s)	467, 1000
BssAI	RCCGGY	2 cut(s)	692, 698
BssECI	CCNNGG	3 cut(s)	99, 534, 982
BssMI	GATC	3 cut(s)	249, 738, 836
BssNI	GRCGYC	5 cut(s)	213, 306, 531, 559, 857
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	2 cut(s)	736, 983
Bst4CI	ACNGT	1 cut(s)	785
Bst6I	CTCTTC	2 cut(s)	25, 587
BstACI	GRCGYC	5 cut(s)	213, 306, 531, 559, 857
BstBAI	YACGTR	1 cut(s)	511
BstC8I	GCNNGC	5 cut(s)	146, 314, 345, 575, 923
BstDEI	CTNAG	1 cut(s)	413
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	4 cut(s)	268, 430, 940, 950
BstH2I	RGCGCY	4 cut(s)	526, 562, 580, 627
BstHHI	GCGC	6 cut(s)	525, 561, 579, 626, 655, 772
BstKTI	GATC	3 cut(s)	252, 741, 839
BstMAI	GTCTC	2 cut(s)	266, 1029
BstMBI	GATC	3 cut(s)	249, 738, 836
BstMWI	GCNNNNNNNGC	9 cut(s)	145, 150, 309, 378, 477, 669, 824, 827, 830
BstNI	CCWGG	2 cut(s)	736, 983
BstSCI	CCNGG	4 cut(s)	139, 533, 734, 981
BstX2I	RGATCY	2 cut(s)	738, 836
BstYI	RGATCY	2 cut(s)	738, 836
BsuRI	GGCC	1 cut(s)	754
BtgI	CCRYGG	1 cut(s)	99
BtrI	CACGTC	2 cut(s)	602, 648
BtsCI	GGATG	4 cut(s)	268, 430, 940, 950
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	2 cut(s)	50, 790
BveI	ACCTGC	1 cut(s)	646
Cac8I	GCNNGC	5 cut(s)	146, 314, 345, 575, 923
CfoI	GCGC	6 cut(s)	525, 561, 579, 626, 655, 772
Cfr10I	RCCGGY	2 cut(s)	692, 698
Cfr13I	GGNCC	3 cut(s)	732, 752, 986
CseI	GACGC	3 cut(s)	221, 539, 865
Csp6I	GTAC	3 cut(s)	355, 454, 460
CviAII	CATG	5 cut(s)	100, 256, 277, 815, 1078
CviQI	GTAC	3 cut(s)	355, 454, 460
DdeI	CTNAG	1 cut(s)	413
DinI	GGCGCC	1 cut(s)	560
DpnI	GATC	3 cut(s)	251, 740, 838
DpnII	GATC	3 cut(s)	249, 738, 836
DraIII	CACNNNGTG	1 cut(s)	787
DrdI	GACNNNNNNGTC	1 cut(s)	862
DseDI	GACNNNNNNGTC	1 cut(s)	862
Eam1104I	CTCTTC	2 cut(s)	25, 587
EarI	CTCTTC	2 cut(s)	25, 587
EciI	GGCGGA	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	99
Eco31I	GGTCTC	2 cut(s)	266, 1029
Eco47I	GGWCC	2 cut(s)	732, 986
Eco57I	CTGAAG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	883
EcoRI	GAATTC	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	734, 981
EcoT14I	CCWWGG	1 cut(s)	99
EgeI	GGCGCC	1 cut(s)	560
EheI	GGCGCC	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	5 cut(s)	103, 259, 280, 818, 1081
FaiI	YATR	8 cut(s)	101, 257, 278, 483, 793, 816, 1032, 1079
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	5 cut(s)	99, 255, 276, 814, 1077
FauI	CCCGC	2 cut(s)	598, 665
FokI	GGATG	4 cut(s)	275, 437, 937, 947
FspBI	CTAG	1 cut(s)	639
GlaI	GCGC	6 cut(s)	524, 560, 578, 625, 654, 771
GsuI	CTGGAG	2 cut(s)	463, 1042
HaeII	RGCGCY	4 cut(s)	526, 562, 580, 627
HaeIII	GGCC	1 cut(s)	754
HapII	CCGG	7 cut(s)	141, 432, 451, 534, 693, 699, 842
HgaI	GACGC	3 cut(s)	221, 539, 865
HhaI	GCGC	6 cut(s)	525, 561, 579, 626, 655, 772
Hin1I	GRCGYC	5 cut(s)	213, 306, 531, 559, 857
Hin1II	CATG	5 cut(s)	103, 259, 280, 818, 1081
Hin6I	GCGC	6 cut(s)	523, 559, 577, 624, 653, 770
HinP1I	GCGC	6 cut(s)	523, 559, 577, 624, 653, 770
HinfI	GANTC	4 cut(s)	64, 386, 428, 941
HpaII	CCGG	7 cut(s)	141, 432, 451, 534, 693, 699, 842
HphI	GGTGA	2 cut(s)	88, 919
Hpy166II	GTNNAC	1 cut(s)	910
Hpy188I	TCNGA	4 cut(s)	28, 249, 849, 946
Hpy188III	TCNNGA	5 cut(s)	35, 283, 390, 432, 1059
Hpy8I	GTNNAC	1 cut(s)	910
HpyAV	CCTTC	2 cut(s)	394, 508
HpyCH4III	ACNGT	1 cut(s)	785
HpyCH4IV	ACGT	5 cut(s)	306, 510, 540, 601, 647
HpyCH4V	TGCA	1 cut(s)	818
HpyF10VI	GCNNNNNNNGC	9 cut(s)	145, 150, 309, 378, 477, 669, 824, 827, 830
HpyF3I	CTNAG	1 cut(s)	413
HpySE526I	ACGT	5 cut(s)	306, 510, 540, 601, 647
Hsp92I	GRCGYC	5 cut(s)	213, 306, 531, 559, 857
Hsp92II	CATG	5 cut(s)	103, 259, 280, 818, 1081
HspAI	GCGC	6 cut(s)	523, 559, 577, 624, 653, 770
KasI	GGCGCC	1 cut(s)	558
Kpn2I	TCCGGA	1 cut(s)	431
Kzo9I	GATC	3 cut(s)	249, 738, 836
LmnI	GCTCC	2 cut(s)	158, 501
MaeI	CTAG	1 cut(s)	639
MaeII	ACGT	5 cut(s)	306, 510, 540, 601, 647
MaeIII	GTNAC	1 cut(s)	641
MalI	GATC	3 cut(s)	251, 740, 838
MbiI	CCGCTC	1 cut(s)	556
MboI	GATC	3 cut(s)	249, 738, 836
MboII	GAAGA	3 cut(s)	12, 574, 733
MfeI	CAATTG	1 cut(s)	119
MflI	RGATCY	2 cut(s)	738, 836
MluCI	AATT	5 cut(s)	92, 119, 130, 184, 227
Mly113I	GGCGCC	1 cut(s)	559
MlyI	GAGTC	4 cut(s)	58, 395, 437, 950
MmeI	TCCRAC	2 cut(s)	710, 1013
MroI	TCCGGA	1 cut(s)	431
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	1 cut(s)	488
MslI	CAYNNNNRTG	1 cut(s)	783
MspA1I	CMGCKG	3 cut(s)	292, 621, 827
MspI	CCGG	7 cut(s)	141, 432, 451, 534, 693, 699, 842
MspR9I	CCNGG	4 cut(s)	141, 535, 736, 983
MunI	CAATTG	1 cut(s)	119
MvaI	CCWGG	2 cut(s)	736, 983
MwoI	GCNNNNNNNGC	9 cut(s)	145, 150, 309, 378, 477, 669, 824, 827, 830
NarI	GGCGCC	1 cut(s)	559
NciI	CCSGG	2 cut(s)	141, 535
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	249, 738, 836
NlaIII	CATG	5 cut(s)	103, 259, 280, 818, 1081
NlaIV	GGNNCC	7 cut(s)	154, 449, 503, 560, 691, 697, 987
NmeAIII	GCCGAG	3 cut(s)	129, 345, 373
PaeR7I	CTCGAG	1 cut(s)	883
PcsI	WCGNNNNNNNCGW	3 cut(s)	216, 537, 863
PdmI	GAANNNNTTC	1 cut(s)	14
PflFI	GACNNNGTC	1 cut(s)	859
PflMI	CCANNNNNTGG	1 cut(s)	498
PleI	GAGTC	4 cut(s)	58, 394, 436, 949
PluTI	GGCGCC	1 cut(s)	562
PpsI	GAGTC	4 cut(s)	58, 394, 436, 949
Ppu21I	YACGTR	1 cut(s)	511
Psp6I	CCWGG	2 cut(s)	734, 981
PspGI	CCWGG	2 cut(s)	734, 981
PspN4I	GGNNCC	7 cut(s)	154, 449, 503, 560, 691, 697, 987
PspPI	GGNCC	3 cut(s)	732, 752, 986
PspXI	VCTCGAGB	1 cut(s)	883
PsuI	RGATCY	2 cut(s)	738, 836
PsyI	GACNNNGTC	1 cut(s)	859
RsaI	GTAC	3 cut(s)	356, 455, 461
RsaNI	GTAC	3 cut(s)	355, 454, 460
RseI	CAYNNNNRTG	1 cut(s)	783
SaqAI	TTAA	1 cut(s)	488
Sau3AI	GATC	3 cut(s)	249, 738, 836
Sau96I	GGNCC	3 cut(s)	732, 752, 986
SchI	GAGTC	4 cut(s)	58, 395, 437, 950
ScrFI	CCNGG	4 cut(s)	141, 535, 736, 983
SfoI	GGCGCC	1 cut(s)	560
Sfr274I	CTCGAG	1 cut(s)	883
SinI	GGWCC	2 cut(s)	732, 986
SlaI	CTCGAG	1 cut(s)	883
SmiMI	CAYNNNNRTG	1 cut(s)	783
SmlI	CTYRAG	1 cut(s)	883
SmoI	CTYRAG	1 cut(s)	883
Sse9I	AATT	5 cut(s)	92, 119, 130, 184, 227
SspDI	GGCGCC	1 cut(s)	558
SspMI	CTAG	1 cut(s)	639
StyD4I	CCNGG	4 cut(s)	139, 533, 734, 981
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	785
TaiI	ACGT	5 cut(s)	309, 513, 543, 604, 650
TaqI	TCGA	8 cut(s)	59, 252, 282, 420, 528, 552, 884, 1087
TasI	AATT	5 cut(s)	92, 119, 130, 184, 227
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TscAI	CASTG	2 cut(s)	50, 790
TspDTI	ATGAA	1 cut(s)	574
TspRI	CASTG	2 cut(s)	50, 790
Tth111I	GACNNNGTC	1 cut(s)	859
Van91I	CCANNNNNTGG	1 cut(s)	498
VpaK11BI	GGWCC	2 cut(s)	732, 986
XapI	RAATTY	1 cut(s)	92
XhoI	CTCGAG	1 cut(s)	883
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	1 cut(s)	639
ZraI	GACGTC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.